View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10581_low_20 (Length: 251)
Name: NF10581_low_20
Description: NF10581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10581_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 54863381 - 54863632
Alignment:
| Q |
1 |
actaatacggacttatgaatatctatcaggtgtagagataaaagagtgattctgttaaaaaggtaaaatcgaaatgatagtagataataagtgtttgagt |
100 |
Q |
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| T |
54863381 |
actaatgcggacttatgaatgtctatcaggtgtagagacaaaagagtgattatgttaaaagggtaaaatcgaaatgatagtagataataagtgcttgagt |
54863480 |
T |
|
| Q |
101 |
ggatcttagatattttattgaaccttttgttataatagggctaaggatag-----tttattttatttaagtctcactatatatattaataacatttgtat |
195 |
Q |
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| T |
54863481 |
gggtgtcagatattttattgaaccttttgttataatagggctaaggatagtttattttattttatttaagtctcactatatatattaataacatttgtat |
54863580 |
T |
|
| Q |
196 |
tcttaaacctttgtcaattttattgttttgttctctcttttctctgcttctc |
247 |
Q |
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| T |
54863581 |
tcttaaacctttgtcaattttattgttttgttctctctttcctctgattctc |
54863632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 124 - 234
Target Start/End: Complemental strand, 20014321 - 20014213
Alignment:
| Q |
124 |
cttttgttataatagggctaaggatagtttattttatttaagtctcactatatatattaataacatttgtattcttaaacctttgtcaattttattgttt |
223 |
Q |
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||||||||||||| ||| ||| | ||||||| |||||||| | ||||||||||| || ||| |||| |||||||||| || ||||| ||| |||||| |
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| T |
20014321 |
cttttgttataattgggttaatggtagtttaatttatttatatttcactatatat--tagtaatatttatattcttaaattttggtcaactttgttgttt |
20014224 |
T |
|
| Q |
224 |
tgttctctctt |
234 |
Q |
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||||||||||| |
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| T |
20014223 |
tgttctctctt |
20014213 |
T |
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