View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10581_low_22 (Length: 249)
Name: NF10581_low_22
Description: NF10581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10581_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 146; Significance: 5e-77; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 21840172 - 21840321
Alignment:
| Q |
1 |
tctcagataacttaccaagtaacacttctaatttgcactcagacatgtttggcacactcattcaagcaatagactcaatgcaagatcatgtaaaaaccat |
100 |
Q |
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| T |
21840172 |
tctcagataacttaccaagtaacacttctaatttgcactcaggcatgtttggcacactcattcaagcaatagactcaatgcaagatcatgtaaaaaccat |
21840271 |
T |
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| Q |
101 |
tttgtttgaacttaaacctaattttattttctttgacattgcaacaagtt |
150 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21840272 |
tttgtttgaacttaaacctaattttattttctttgacattgcaacaagtt |
21840321 |
T |
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Target: chr4; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 151 - 239
Target Start/End: Original strand, 21875268 - 21875356
Alignment:
| Q |
151 |
ggatcccagaaatagcttctgaacttggcataaaatctgtttacttctcggtctactcagccatttcagcttcttactgatgtccatct |
239 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
21875268 |
ggatcccagaaatagcttctgaacttggcataaaatctgtttacttctcggtctactcagccatttcagcttcttacttatgtccatct |
21875356 |
T |
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