View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10581_low_24 (Length: 247)
Name: NF10581_low_24
Description: NF10581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10581_low_24 |
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Alignment Details
Target: chr8 (Bit Score: 74; Significance: 5e-34; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 54 - 131
Target Start/End: Original strand, 11152062 - 11152139
Alignment:
| Q |
54 |
aataataaattaaaccatatgaaacaacgcatgtgaaacattgattaaacaatgtagtacaaatattgataggttata |
131 |
Q |
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| T |
11152062 |
aataataaattaaaccatatgaaacaacgcatgtgaaacattgattaagcaatgtagtacaaatattgataggttata |
11152139 |
T |
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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 196 - 238
Target Start/End: Original strand, 11152204 - 11152246
Alignment:
| Q |
196 |
tactggatagccctagcacctctactaccccataccatgccta |
238 |
Q |
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| T |
11152204 |
tactgggtagccctagcacctctactaccccataccatgccta |
11152246 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 118
Target Start/End: Complemental strand, 18419358 - 18419300
Alignment:
| Q |
60 |
aaattaaaccatatgaaacaacgcatgtgaaacattgattaaacaatgtagtacaaata |
118 |
Q |
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| T |
18419358 |
aaattaaaccatatgaaacaagacaagtgaaacttagattaaacaaagtagtaccaata |
18419300 |
T |
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