View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10581_low_30 (Length: 239)
Name: NF10581_low_30
Description: NF10581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10581_low_30 |
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Alignment Details
Target: chr5 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 12 - 220
Target Start/End: Complemental strand, 40683310 - 40683102
Alignment:
| Q |
12 |
tgagatgaagctgaaggtagactcgtgtgagcctcacgtgactaacaacatttatcgtagccgccaagaacatggaagggttgaattcggtctcaaattg |
111 |
Q |
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| T |
40683310 |
tgagatgaagctgaaggtagactcgtgtgagcctcacgtgactaacaacatttatcgtagccgccgagaacatggaagggttgaattcggtctcaaattg |
40683211 |
T |
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| Q |
112 |
ttcacttccatccagtttaagaaagatatctatgaatccaactggataactttgaaggttgtttgctacccacttagctttgttatttcgcaaaatgtct |
211 |
Q |
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| T |
40683210 |
ttcacttccatccagtttaagaaagatatctttgaatccaactggataactttgaaggttgtttgctacccacttagctttgttatttcgcaaaatgtct |
40683111 |
T |
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| Q |
212 |
acaatatta |
220 |
Q |
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| T |
40683110 |
acaatatta |
40683102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 79 - 216
Target Start/End: Complemental strand, 40672923 - 40672786
Alignment:
| Q |
79 |
gaacatggaagggttgaattcggtctcaaattgttcacttccatccagtttaagaaagatatctatgaatccaactggataactttgaaggttgtttgct |
178 |
Q |
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| T |
40672923 |
gaacatggaagggttgcattcgggctcaaagtgttcacttccatcgggttcaagagttatatctttgtttccaatcggaaacatttgaagtatgtttgct |
40672824 |
T |
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| Q |
179 |
acccacttagctttgttatttcgcaaaatgtctacaat |
216 |
Q |
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| T |
40672823 |
acccactaagctttggaatttcgaaaaatgtctacaat |
40672786 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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