View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10581_low_32 (Length: 239)
Name: NF10581_low_32
Description: NF10581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10581_low_32 |
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| [»] chr7 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 105 - 239
Target Start/End: Original strand, 37140597 - 37140731
Alignment:
| Q |
105 |
tactgtacaggaccaagttaaagcaaacggaagtggattgtgaatacttaaaaagatgttgtgagactctaacagaagaaaataaaagattacaaaagga |
204 |
Q |
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| T |
37140597 |
tactgtacaggaccaagtcaaagcaaacggaagtggattgtgaatacttaaaaagatgttgtgagactctgacagaagaaaataaaagattacaaaagga |
37140696 |
T |
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| Q |
205 |
acttcaggaattgagagctttgaaaacttctcaac |
239 |
Q |
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| T |
37140697 |
acttcaggaattgagagctttgaaaacttctcaac |
37140731 |
T |
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Target: chr1 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 113 - 239
Target Start/End: Original strand, 23336623 - 23336749
Alignment:
| Q |
113 |
aggaccaagttaaagcaaacggaagtggattgtgaatacttaaaaagatgttgtgagactctaacagaagaaaataaaagattacaaaaggaacttcagg |
212 |
Q |
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| T |
23336623 |
aggacaaagttaaagcaaacagaagtggattgtgagtatttgaagagatgttgtgagacattaacagaagagaatagaagattacaaaaggaacttcaag |
23336722 |
T |
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| Q |
213 |
aattgagagctttgaaaacttctcaac |
239 |
Q |
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| T |
23336723 |
agcttagagctttgaaaactactcaac |
23336749 |
T |
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Target: chr2 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 113 - 234
Target Start/End: Complemental strand, 25901716 - 25901595
Alignment:
| Q |
113 |
aggaccaagttaaagcaaacggaagtggattgtgaatacttaaaaagatgttgtgagactctaacagaagaaaataaaagattacaaaaggaacttcagg |
212 |
Q |
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| T |
25901716 |
aggactaagttgaagcaaacagaagtggattgtgaatacttaaagagatgctgtgaaacactaacagaagaaaataggaggctacacaaggaacttcaag |
25901617 |
T |
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| Q |
213 |
aattgagagctttgaaaacttc |
234 |
Q |
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| T |
25901616 |
aattaagagctttaaaaacttc |
25901595 |
T |
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Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 112 - 177
Target Start/End: Original strand, 891119 - 891184
Alignment:
| Q |
112 |
caggaccaagttaaagcaaacggaagtggattgtgaatacttaaaaagatgttgtgagactctaac |
177 |
Q |
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| T |
891119 |
caggaccaagttgaagcaaactgaagtggattgtgagtacttgaagagatgctgtgagactctaac |
891184 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 188
Target Start/End: Original strand, 4059100 - 4059176
Alignment:
| Q |
112 |
caggaccaagttaaagcaaacggaagtggattgtgaatacttaaaaagatgttgtgagactctaacagaagaaaata |
188 |
Q |
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| T |
4059100 |
caggactaagttgaagcaaacagaggtagattgtgaatttttgaaaagatgttgtgagaatctaacggatgaaaata |
4059176 |
T |
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