View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10581_low_34 (Length: 229)
Name: NF10581_low_34
Description: NF10581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10581_low_34 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 33461873 - 33462097
Alignment:
| Q |
1 |
atcacaacaaggttctgctggtaaaccatactttgctctcaatttctctctgtaaagacatgagtatagccaatgacatgtaatggtcatcagtaaaccg |
100 |
Q |
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| T |
33461873 |
atcacaacatggttcagctggtaaaccatattttgctctcagtttctctctgtaaagacatgagtatagccaatgacatgtaatggtcatcagtaaaccg |
33461972 |
T |
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| Q |
101 |
tatacacatccttgcatagcacaagctgcattcattaattagaaatatcatgaatcaaagtatacatattttgagtacatatatatatagaaaaataggt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
33461973 |
tatacacatccttgcatagcacaagctgcattcattaattcaaaatatcatgaatcaaagtatacatattttgag----tatatatatagaaaaataggt |
33462068 |
T |
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| Q |
201 |
atttaatgttgtgtacttacaactacgtc |
229 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
33462069 |
atttaatgttgtgtacttacaactacgtc |
33462097 |
T |
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