View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10581_low_35 (Length: 225)

Name: NF10581_low_35
Description: NF10581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10581_low_35
NF10581_low_35
[»] scaffold0003 (1 HSPs)
scaffold0003 (12-207)||(9062-9255)
[»] chr7 (1 HSPs)
chr7 (12-207)||(16420350-16420543)
[»] chr8 (1 HSPs)
chr8 (15-207)||(5538222-5538411)
[»] chr3 (1 HSPs)
chr3 (15-107)||(19932361-19932453)
[»] chr5 (1 HSPs)
chr5 (33-107)||(37940370-37940444)
[»] chr6 (2 HSPs)
chr6 (142-207)||(3508678-3508743)
chr6 (157-196)||(34518720-34518759)
[»] chr1 (2 HSPs)
chr1 (40-107)||(18901605-18901672)
chr1 (36-107)||(51784714-51784783)
[»] scaffold0004 (1 HSPs)
scaffold0004 (157-205)||(189002-189055)


Alignment Details
Target: scaffold0003 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 12 - 207
Target Start/End: Original strand, 9062 - 9255
Alignment:
Q  12 agcaaaggaagtgattggcatgtggaaataaacatccacgtttcttcccaatcccattttccactatgttccatattgttaggaaataagttagtgggag 111  Q
    ||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9062 agcaaaggaagtgattggcgtgtggaaataaagatccacgtttcttcccaatcccattttccactatgttccatattgttaggaaataagttagtgggag 9161  T
Q  112 aattattagtaaccggttccnnnnnnnnncttcacacacacccctttctatactttgaagaacaaaaacaaaatacatagtgagaaagagaaagag 207  Q
    ||||||||||||||||||||          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9162 aattattagtaaccggttcctattcttt--ttcacacacacccctttctatactttgaagaacaaaaacaaaatacatagtgagaaagagaaagag 9255  T

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Target: chr7 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 12 - 207
Target Start/End: Original strand, 16420350 - 16420543
Alignment:
Q  12 agcaaaggaagtgattggcatgtggaaataaacatccacgtttcttcccaatcccattttccactatgttccatattgttaggaaataagttagtgggag 111  Q
    ||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16420350 agcaaaggaagtgattggcgtgtggaaataaagatccacgtttcttcccaatcccattttccactatgttccatattgttaggaaataagttagtgggag 16420449  T
Q  112 aattattagtaaccggttccnnnnnnnnncttcacacacacccctttctatactttgaagaacaaaaacaaaatacatagtgagaaagagaaagag 207  Q
    ||||||||||||||||||||          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16420450 aattattagtaaccggttcctattcttt--ttcacacacacccctttctatactttgaagaacaaaaacaaaatacatagtgagaaagagaaagag 16420543  T

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Target: chr8 (Bit Score: 134; Significance: 7e-70; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 15 - 207
Target Start/End: Complemental strand, 5538411 - 5538222
Alignment:
Q  15 aaaggaagtgattggcatgtggaaataaacatccacgtttcttcccaatcccattttccactatgttccatattgttaggaaataagttagtgggagaat 114  Q
    |||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||    
T  5538411 aaaggaagtgattg-cgtgtggaaataaacatccacgtttcttcccaatcccattttccactatgtcccatattgttaggaaataagctagtgggagaat 5538313  T
Q  115 tattagtaaccggttccnnnnnnnnncttcacacacacccctttctatactttgaagaacaaaaacaaaatacatagtgagaaagagaaagag 207  Q
    ||||||||||| |||||          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5538312 tattagtaaccagttcctattcctt--ttcacacacacccctttctatactttgaagaacaaaaacaaaatacatagtgagaaagagaaagag 5538222  T

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Target: chr3 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 15 - 107
Target Start/End: Original strand, 19932361 - 19932453
Alignment:
Q  15 aaaggaagtgattggcatgtggaaataaacatccacgtttcttcccaatcccattttccactatgttccatattgttaggaaataagttagtg 107  Q
    ||||||| |||||| |  |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  19932361 aaaggaactgattgactagtggaaataaacatccacgtttcttcccaatcccattttccactatgttccatatttttaggaaataagttagtg 19932453  T

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Target: chr5 (Bit Score: 67; Significance: 6e-30; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 33 - 107
Target Start/End: Complemental strand, 37940444 - 37940370
Alignment:
Q  33 gtggaaataaacatccacgtttcttcccaatcccattttccactatgttccatattgttaggaaataagttagtg 107  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||    
T  37940444 gtggaaataaacatccacgtttcttcccaatctcattttccactatgttccatatttttaggaaataagttagtg 37940370  T

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Target: chr6 (Bit Score: 66; Significance: 2e-29; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 142 - 207
Target Start/End: Original strand, 3508678 - 3508743
Alignment:
Q  142 ttcacacacacccctttctatactttgaagaacaaaaacaaaatacatagtgagaaagagaaagag 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3508678 ttcacacacacccctttctatactttgaagaacaaaaacaaaatacatagtgagaaagagaaagag 3508743  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 196
Target Start/End: Complemental strand, 34518759 - 34518720
Alignment:
Q  157 ttctatactttgaagaacaaaaacaaaatacatagtgaga 196  Q
    |||||||||||||||||||||| |||||||||||| ||||    
T  34518759 ttctatactttgaagaacaaaatcaaaatacatagagaga 34518720  T

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Target: chr1 (Bit Score: 64; Significance: 4e-28; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 40 - 107
Target Start/End: Original strand, 18901605 - 18901672
Alignment:
Q  40 taaacatccacgtttcttcccaatcccattttccactatgttccatattgttaggaaataagttagtg 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  18901605 taaacatccacgtttcttcccaatcccattttccactatgttccatatttttaggaaataagttagtg 18901672  T

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Target: chr1; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 36 - 107
Target Start/End: Complemental strand, 51784783 - 51784714
Alignment:
Q  36 gaaataaacatccacgtttcttcccaatcccattttccactatgttccatattgttaggaaataagttagtg 107  Q
    |||||||||||  |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  51784783 gaaataaacat--acgtttcttcccaatcccattttccactatgttccatatttttaggaaataagttagtg 51784714  T

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Target: scaffold0004 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 157 - 205
Target Start/End: Complemental strand, 189055 - 189002
Alignment:
Q  157 ttctatactttgaagaac-----aaaaacaaaatacatagtgagaaagagaaag 205  Q
    ||||||||||||||||||     ||||||||||||||||| |||||||||||||    
T  189055 ttctatactttgaagaacaaaacaaaaacaaaatacatagggagaaagagaaag 189002  T

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