View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10581_low_5 (Length: 351)
Name: NF10581_low_5
Description: NF10581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10581_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 257; Significance: 1e-143; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 61 - 329
Target Start/End: Original strand, 31502236 - 31502504
Alignment:
| Q |
61 |
aacaagttgatcacatctttgaagcaaatggatagtaaatttggcatgtcttcaaatttggaacttgatcaacacctttattctttgattagagtgttta |
160 |
Q |
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| T |
31502236 |
aacaagttgatcacatctttgaagcaaatggatagtaaatttggcatgtcttcaattttggaacttgatcaacacctttattctttgattagagtgttta |
31502335 |
T |
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| Q |
161 |
aagaagtcatagcaatgaatttgtctatttttcaaatcattttgtcattcttgactatgtcttcatcaaagtcaaagacaaccaagtggaaatttgttgc |
260 |
Q |
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| T |
31502336 |
aagaagtcatagcaatgaatttgtctatttttcaaatcattttgtcattcttgactatgtcttcatcaaagtcaaagacaaccaagtggaaatttgttgc |
31502435 |
T |
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| Q |
261 |
taaaatgatgcacaaaggagtcataacatgtgaagataactcagatcatgtcaatgagtttttgtgtgt |
329 |
Q |
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| T |
31502436 |
taaaatgatgcacaaaggagtcataacatgtgaagataactcggataatgtcaatgagtttttgtgtgt |
31502504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 61 - 329
Target Start/End: Original strand, 31476872 - 31477140
Alignment:
| Q |
61 |
aacaagttgatcacatctttgaagcaaatggatagtaaatttggcatgtcttcaaatttggaacttgatcaacacctttattctttgattagagtgttta |
160 |
Q |
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| T |
31476872 |
aacaagttgatcacatctttgaagcacatgaatagtaaatttggcatgtcttcaattttggaacttgatcatcacttttcttgtttgattagagtattta |
31476971 |
T |
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| Q |
161 |
aagaagtcatagcaatgaatttgtctatttttcaaatcattttgtcattcttgactatgtcttcatcaaagtcaaagacaaccaagtggaaatttgttgc |
260 |
Q |
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| T |
31476972 |
gggaagtcatagtaatgaacttatctgtttttcaattcattttgtcatttttgaatgtgtcttcatcaaagtcaaagacagctaaatggaagtttgtggc |
31477071 |
T |
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| Q |
261 |
taaaatgatgcacaaaggagtcataacatgtgaagataactcagatcatgtcaatgagtttttgtgtgt |
329 |
Q |
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| T |
31477072 |
taaactgatgcacaaaggggttataacatgtgaagataactcatataatgtcaatgagtttttgtgtgt |
31477140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 57 - 320
Target Start/End: Original strand, 31467022 - 31467285
Alignment:
| Q |
57 |
tgtcaacaagttgatcacatctttgaagcaaatggatagtaaatttggcatgtcttcaaatttggaacttgatcaacacctttattctttgattagagtg |
156 |
Q |
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| T |
31467022 |
tgtcaccaagttgatcacaagtttgaagcatatggatagtaaatttggggtgtcccaaattttagaacttgatcatcacctttgctctataattagagtg |
31467121 |
T |
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| Q |
157 |
tttaaagaagtcatagcaatgaatttgtctatttttcaaatcattttgtcattcttgactatgtcttcatcaaagtcaaagacaaccaagtggaaatttg |
256 |
Q |
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| T |
31467122 |
tttagggaagtgattacaatgaacttgtctgtttttcaattcattttgtcatttttgaatgtgtcttcatcaaagtctaaggcaactaaatggatgttgg |
31467221 |
T |
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| Q |
257 |
ttgctaaaatgatgcacaaaggagtcataacatgtgaagataactcagatcatgtcaatgagtt |
320 |
Q |
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| T |
31467222 |
tgacaaaactaatgcacaagggtgctataacatttgaagataactcagaaaatatcaatgagtt |
31467285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 31502176 - 31502213
Alignment:
| Q |
1 |
agtgttgaaagaagtgtgacacaatacaaattcttcac |
38 |
Q |
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| T |
31502176 |
agtgttgaaataagtgtgacacaatacaaattcttcac |
31502213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 31476812 - 31476849
Alignment:
| Q |
1 |
agtgttgaaagaagtgtgacacaatacaaattcttcac |
38 |
Q |
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| T |
31476812 |
agtgttgaaagaagtgtggcagaatacaaattcttcac |
31476849 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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