View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10581_low_6 (Length: 341)
Name: NF10581_low_6
Description: NF10581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10581_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 18 - 330
Target Start/End: Complemental strand, 11769850 - 11769540
Alignment:
| Q |
18 |
ataatacattggaagtacttttcaaaaagaaaataatacattggagggtccctatattggaagtgccaggcttgcatctaagaattgtgtaaaagtctaa |
117 |
Q |
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| T |
11769850 |
ataatacattggaagtacttttcaaaaagaaaataatacattggagggtccctatattggaagtgccaggcttgcatctaagaattgtgtaaaagtctaa |
11769751 |
T |
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| Q |
118 |
ctaaaaatgtttgaacatagcgtgtgggacttgaaaataaaaactctgagttccatatttggataatatactatactatagtacgtctaatttgaaaaat |
217 |
Q |
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| T |
11769750 |
ctaaaaatgtttgaagatagcgtgtgggacttgaaaataaaaact--gagttccatatttggataatatagcatactatagtacgtctaatttgaaaaat |
11769653 |
T |
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| Q |
218 |
actaaagtctcacattgcttatacccacattggttagttttcaacattatgtaaggagtgctcatgactcttttaaagtgcatcaatgctttaaacattt |
317 |
Q |
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| T |
11769652 |
actaaagtctcacattgcttatacccacattggttagttttcaacattatgtaaggagtgctcatgactcttttaaagtgcatcaatgctttagacattt |
11769553 |
T |
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| Q |
318 |
ccaaacgttctct |
330 |
Q |
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| T |
11769552 |
ccaaatgttctct |
11769540 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 244 - 290
Target Start/End: Complemental strand, 43544176 - 43544130
Alignment:
| Q |
244 |
acattggttagttttcaacattatgtaaggagtgctcatgactcttt |
290 |
Q |
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| T |
43544176 |
acattggttatttttcaacattatataaggagtgctcatggctcttt |
43544130 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 243 - 290
Target Start/End: Complemental strand, 8977459 - 8977412
Alignment:
| Q |
243 |
cacattggttagttttcaacattatgtaaggagtgctcatgactcttt |
290 |
Q |
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| T |
8977459 |
cacattggttagtttccaacattatataaggagtgttcacgactcttt |
8977412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 243 - 290
Target Start/End: Original strand, 7583900 - 7583947
Alignment:
| Q |
243 |
cacattggttagttttcaacattatgtaaggagtgctcatgactcttt |
290 |
Q |
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| T |
7583900 |
cacattggttagtttccaacattatataaggagtgttcacgactcttt |
7583947 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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