View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10581_low_7 (Length: 334)
Name: NF10581_low_7
Description: NF10581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10581_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 287; Significance: 1e-161; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 16 - 327
Target Start/End: Original strand, 9571161 - 9571472
Alignment:
| Q |
16 |
agaaattcgttgaggctgatgaagaatgtttctacgaatcatctggaagaataagcttccgtagcaacgtcacacttagcagaaagaaaacagatggact |
115 |
Q |
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| T |
9571161 |
agaaattcgttgaggctgatgaagaatgtttctacgaatcatctggaagaataagcttccgtagcaacgtcacacttagcagaaagaaaacagatggact |
9571260 |
T |
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| Q |
116 |
cgaaactgaagatcttggaaacaaggttatatgtccactgcaagaatatttattggggtcatccttcgagatacgagagaaaacagaagtcaggatagag |
215 |
Q |
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| T |
9571261 |
cgaaactgaagatcttggaaacaaggttatatgtccactgcaagaatatttattggggtcatccttcgagatacgagagaaaacagaagtcaggatagag |
9571360 |
T |
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| Q |
216 |
agggcatcagtaagagagacacaagtaaagcaaggtcgtaggtctgccttgcatattatcnnnnnnntgtcgaatatggtccttagttcttcaaaaagct |
315 |
Q |
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| T |
9571361 |
agggcatcagtaagagagacacaagtaaagcaaggtcgtaggtctgccttgcatattatcaaaaaaatgtcgaatatggtcctcagttcttcaaaaagct |
9571460 |
T |
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| Q |
316 |
gtaacacctatg |
327 |
Q |
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| T |
9571461 |
gtaacacctatg |
9571472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 78 - 223
Target Start/End: Original strand, 9774434 - 9774579
Alignment:
| Q |
78 |
agcaacgtcacacttagcagaaagaaaacagatggactcgaaactgaagatcttggaaacaaggttatatgtccactgcaagaatatttattggggtcat |
177 |
Q |
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| T |
9774434 |
agcaacatcaaaattagcggaaagcaaacagatggatccgaagatgaagattgtggaaacaaggatgtctgtccactgcaaggatatttattgggctcgt |
9774533 |
T |
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| Q |
178 |
ccttcgagatacgagagaaaacagaagtcaggatagagagggcatc |
223 |
Q |
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| T |
9774534 |
cgttcgaaataccagaaaaagtacaagtgaggaaagagagggcatc |
9774579 |
T |
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