View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10581_low_9 (Length: 330)
Name: NF10581_low_9
Description: NF10581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10581_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 7 - 313
Target Start/End: Complemental strand, 2298229 - 2297921
Alignment:
| Q |
7 |
ctcgctaacaaacaaaaccaaataataagttttgacnnnnnnnnnccaaagaaaaagttaaagagtggtactatgactatcgtcttaaattgaaacctcc |
106 |
Q |
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| T |
2298229 |
ctcgctaacaaacaaaaccaaataataatttttgacaaaaaaaa-ccaaagaaaaagttaaagagtggtactatgactatcgtcttaaattgaaacctcc |
2298131 |
T |
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| Q |
107 |
ccaactttttgttttattttgattttccaagatgccaaaaaatctataaaaatctactannnnnnnnn--aggaatagaaaaa-tctataaaaatctacc |
203 |
Q |
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| T |
2298130 |
ccaactttttgtttgattttgattttccaagatgccaaaaaatctataaaaatctactatttttttttttaggaataaaaaaaatctataaaaatctact |
2298031 |
T |
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| Q |
204 |
acttactacttcgcacatttattataagagataagattgaatgtagtttatacaaatcttggcaattttgtagaattaaattaggggtcccttaatatgg |
303 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2298030 |
acttactacttctcacatttattataagagataagattgaatgtagtttatacaaatcttggcaattttgtagaattaaattaggggtcccttaatatgg |
2297931 |
T |
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| Q |
304 |
acctgatgtc |
313 |
Q |
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|||| ||||| |
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| T |
2297930 |
accttatgtc |
2297921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 70 - 165
Target Start/End: Complemental strand, 2320378 - 2320283
Alignment:
| Q |
70 |
agtggtactatgactatcgtcttaaattgaaacctccccaactttttgttttattttgattttccaagatgccaaaaaatctataaaaatctacta |
165 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| |||||| |
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| T |
2320378 |
agtggtactatgactatcgtcttaaattgaaacctccccctacttttgttttattttgattttccaagatgctaaaaaatctataaaaaactacta |
2320283 |
T |
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