View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10582_high_1 (Length: 401)
Name: NF10582_high_1
Description: NF10582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10582_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 339; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 13 - 391
Target Start/End: Original strand, 30809329 - 30809707
Alignment:
| Q |
13 |
ctatcacccttttgtgcttcactaagatcaatcactggaatgctactgttgaaagggattttgagatttcctggtcttgattcttgtggaaatatgtagt |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| ||||||||||||||||||| ||||||||||||| | |
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| T |
30809329 |
ctatcacccttttgtgcttcactaagatcaatcactggaatgctactattgaatgggattttgaaatttcctggtcttgattctggtggaaatatgtaat |
30809428 |
T |
|
| Q |
113 |
cctcagggacagattggaaattggaccaacaacttgtaataagtttatccattgcttagtatagtttgattatgcttgacaaaatgagattaaaggctaa |
212 |
Q |
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||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
30809429 |
tctcagggacagattgaaagttggaccaacaacttgtaataagtttatccattgcttagtatagtttgattatgcttgacacaatgagattaaaggctaa |
30809528 |
T |
|
| Q |
213 |
aagtggaagggttctatgttgatggagaagagcaaacatgttgtgcattaatatatcttaattttgacaaagataattatattttttgcaacatttggga |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
30809529 |
aagtggaagggttctatgttgatggagaagagcaaacatgttgtgcattaatatatcttaattttgacaaagataattatattttttgcaacaattggga |
30809628 |
T |
|
| Q |
313 |
acttgaaagtgatgttcctgttttttattaggattgtgtttgtagttgcatcttttcatattattttataagcttcatc |
391 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30809629 |
acttgaaagtgatgttcctgttttttattaggattgtgtttgtagttgcatcttttcatattattttataagcttcatc |
30809707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 13 - 169
Target Start/End: Original strand, 30801923 - 30802079
Alignment:
| Q |
13 |
ctatcacccttttgtgcttcactaagatcaatcactggaatgctactgttgaaagggattttgagatttcctggtcttgattcttgtggaaatatgtagt |
112 |
Q |
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||||||||||| ||||||||| |||||||||||||| |||||| | |||| |||||||| | ||| ||||||||||||||| | |||||||| |||| |
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| T |
30801923 |
ctatcacccttacatgcttcacttagatcaatcactgggatgctattactgaatgggattttcacattccctggtcttgattctgggggaaatatatagt |
30802022 |
T |
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| Q |
113 |
cctcagggacagattggaaattggaccaacaacttgtaataagtttatccattgctt |
169 |
Q |
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||||||||| |||| | ||||||||||| | ||||||||||||| |||||||||| |
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| T |
30802023 |
tttcagggacatattgaatattggaccaacgatttgtaataagtttctccattgctt |
30802079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 13 - 127
Target Start/End: Original strand, 30750604 - 30750718
Alignment:
| Q |
13 |
ctatcacccttttgtgcttcactaagatcaatcactggaatgctactgttgaaagggattttgagatttcctggtcttgattcttgtggaaatatgtagt |
112 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| | ||| ||| | |||||| |||||||||| ||| |||||||||| ||||||||| |||| |||| |
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| T |
30750604 |
ctatcaccattttgtgcttcactaagatcaattattgggatggttttgttgattgggattttgaaattccctggtcttgtttcttgtgggaatacatagt |
30750703 |
T |
|
| Q |
113 |
cctcagggacagatt |
127 |
Q |
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||||||| ||||||| |
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| T |
30750704 |
cctcaggcacagatt |
30750718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 13 - 127
Target Start/End: Original strand, 30752415 - 30752529
Alignment:
| Q |
13 |
ctatcacccttttgtgcttcactaagatcaatcactggaatgctactgttgaaagggattttgagatttcctggtcttgattcttgtggaaatatgtagt |
112 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| | ||| ||| | |||||| |||||||||| ||| |||||||||| ||||||||| |||| |||| |
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| T |
30752415 |
ctatcaccattttgtgcttcactaagatcaattattgggatggttttgttgattgggattttgaaattccctggtcttgtttcttgtgggaatacatagt |
30752514 |
T |
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| Q |
113 |
cctcagggacagatt |
127 |
Q |
| |
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||||||| ||||||| |
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| T |
30752515 |
cctcaggcacagatt |
30752529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 13 - 127
Target Start/End: Original strand, 30762749 - 30762863
Alignment:
| Q |
13 |
ctatcacccttttgtgcttcactaagatcaatcactggaatgctactgttgaaagggattttgagatttcctggtcttgattcttgtggaaatatgtagt |
112 |
Q |
| |
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||||| || ||||||||||||||||||||||| ||| ||| | |||| | |||||||||| ||| |||||||||| ||||||||| |||| |||| |
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| T |
30762749 |
ctatccccattttgtgcttcactaagatcaattgttgggatggttttgttaattgggattttgaaattccctggtcttgtttcttgtgggaatacatagt |
30762848 |
T |
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| Q |
113 |
cctcagggacagatt |
127 |
Q |
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||||||| ||||||| |
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| T |
30762849 |
cctcaggcacagatt |
30762863 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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