View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10582_high_13 (Length: 229)
Name: NF10582_high_13
Description: NF10582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10582_high_13 |
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Alignment Details
Target: chr3 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 4 - 224
Target Start/End: Original strand, 24921717 - 24921933
Alignment:
| Q |
4 |
aataggacttttatcttctccactaagttatcaacctccttgatcgaattattaaaaaatacaatcattccgctctatccaaatgatccaaattgcggcg |
103 |
Q |
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| T |
24921717 |
aataggacttttatcttcacca---agtcatcaacctccttgatcgaattattaaaa-atacaatcattcctctccgtccaaatgatccgaattgcggcg |
24921812 |
T |
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| Q |
104 |
tgccaaattaaccaaaaaaccctcctaacctttctaggcctcacctcatttgatcaacataaaaagtgcacaaacaaatttggaggagttaccaacatga |
203 |
Q |
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|||||||||||||||||| |||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |||||||| |
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| T |
24921813 |
tgccaaattaaccaaaaagccctcctaacctttttaggcctcacctcatttgaccaacataaaaagtgcacaaacaaatttggaggggttatcaacatga |
24921912 |
T |
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| Q |
204 |
tttgaagccaattcaatacct |
224 |
Q |
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||||||| ||||||| ||||| |
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| T |
24921913 |
tttgaagtcaattcagtacct |
24921933 |
T |
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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 58 - 111
Target Start/End: Original strand, 53317823 - 53317876
Alignment:
| Q |
58 |
aaaaatacaatcattccgctctatccaaatgatccaaattgcggcgtgccaaat |
111 |
Q |
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|||||| | ||||||||||||| ||||||| | ||||||| ||||||||||||| |
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| T |
53317823 |
aaaaatcctatcattccgctctttccaaatcacccaaattacggcgtgccaaat |
53317876 |
T |
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