View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10582_high_2 (Length: 382)
Name: NF10582_high_2
Description: NF10582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10582_high_2 |
 | |
|
| [»] scaffold0066 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 83 - 343
Target Start/End: Complemental strand, 8877826 - 8877570
Alignment:
| Q |
83 |
gattttcagaaatttaaattgagatataaacaagcagtcatcatttttgaattctaacaataaagggtaatggttagacctaagcttagtgagggtagaa |
182 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8877826 |
gattttcagaaatttaaattgagatataaacaagcattcatcatttttgaattctaacaataaagggtaatggttagacctaagcttagtgagggtagaa |
8877727 |
T |
|
| Q |
183 |
catgttactaagttacaagaagcataccattcatgattacatattgcgcgatcctgccttctttgaatgtgaaatctactacttctgccattggaccagg |
282 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8877726 |
catgttactaagttacaagcagcataccattcatgattacatattgtgcgatccagccttctttgaatgtgaaatctactacttctgccattggaccagg |
8877627 |
T |
|
| Q |
283 |
tatagctagctagaacctcttgtgtgaatatgaatgagattattggaattagtccaatctt |
343 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8877626 |
tatag----ctagaacctcttgtgtgaatatgaatgagattattggaattagtccaatctt |
8877570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 11 - 86
Target Start/End: Complemental strand, 8883460 - 8883385
Alignment:
| Q |
11 |
cataggacagccaatgaattgagtgttccaacaattcttcactatgttaatacaattaggatgtgaaatccagatt |
86 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8883460 |
cataggacagccaatgaattgagtgttccaacaattcttcactatgttaatacaattaggatgtgaaatccagatt |
8883385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 95 - 280
Target Start/End: Complemental strand, 22136356 - 22136171
Alignment:
| Q |
95 |
tttaaattgagatataaacaagcagtcatcatttttgaattctaacaataaagggtaatggttagacctaagcttagtgagggtagaacatgttactaag |
194 |
Q |
| |
|
|||||||||||| | ||| | |||||| ||||||| ||||||| | | |||| |||||| ||| |||||||| ||||| || ||| | ||||| ||| |
|
|
| T |
22136356 |
tttaaattgagagacaaagagacagtcaccatttttaaattctagaaggatagggaaatggtaagatctaagctttgtgagagttgaataggttacaaag |
22136257 |
T |
|
| Q |
195 |
ttacaagaagcataccattcatgattacatattgcgcgatcctgccttctttgaatgtgaaatctactacttctgccattggacca |
280 |
Q |
| |
|
||||||| | |||||||||| || ||||| |||| | ||| ||||| |||||||||| ||||||| ||||| ||||||||||| |
|
|
| T |
22136256 |
ttacaagcaacataccattcctggttacaaattgttctatcaagccttttttgaatgtggaatctacctcttctcccattggacca |
22136171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 208 - 284
Target Start/End: Complemental strand, 12301840 - 12301764
Alignment:
| Q |
208 |
accattcatgattacatattgcgcgatcctgccttctttgaatgtgaaatctactacttctgccattggaccaggta |
284 |
Q |
| |
|
||||||| ||||||||||| || | ||| | |||||||||||||||||| ||| ||||| ||||| ||||||||| |
|
|
| T |
12301840 |
accattcttgattacatatggctctatcaagtcttctttgaatgtgaaatttaccccttcttccatttgaccaggta |
12301764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0066 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0066
Description:
Target: scaffold0066; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 208 - 284
Target Start/End: Original strand, 38243 - 38319
Alignment:
| Q |
208 |
accattcatgattacatattgcgcgatcctgccttctttgaatgtgaaatctactacttctgccattggaccaggta |
284 |
Q |
| |
|
||||||| ||||||||||| || | ||| | |||||||||||||||||| ||| ||||| ||||| ||||||||| |
|
|
| T |
38243 |
accattcttgattacatatggctctatcaagtcttctttgaatgtgaaatttaccccttcttccatttgaccaggta |
38319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University