View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10582_low_11 (Length: 317)

Name: NF10582_low_11
Description: NF10582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10582_low_11
NF10582_low_11
[»] chr5 (1 HSPs)
chr5 (7-298)||(11145353-11145647)


Alignment Details
Target: chr5 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 7 - 298
Target Start/End: Complemental strand, 11145647 - 11145353
Alignment:
Q  7 aaagtgaatataggttatcttatatctaattagttttgttatgcgac--ggtaatatgatggatcatcatttgacgagggtgtccatgttcttgtgctat 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  11145647 aaagtgaatataggttatcttatatctaattagttttgttatgcgacacggtaatatgatggatcatcatttgacgagggtgtccatgttcttgtgttat 11145548  T
Q  105 tgtcctgatccaaatttaatttgttcttatttgtataactcatgtcttttacaattaaagcaatacgtttttcccttaac-aaaatgttataaaattatt 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||    
T  11145547 tgtcctgatccaaatttaatttgttcttatttgtataactcatgtcttttacaattaaagcaatacgtttttcccataacaaaaatgttataaaattatt 11145448  T
Q  204 aggacttaataaagagtggatatgaggtagcaactagggttgaagcatatgaccgagaaccatggtagaactttatagatgatgagagatgatat 298  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  11145447 aggacttaataaagagtggatatgaggaagcaactagggttgaagcatatgaccgagaacgatggtagaactttatagatgatgagagatgatat 11145353  T

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