View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10582_low_12 (Length: 315)

Name: NF10582_low_12
Description: NF10582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10582_low_12
NF10582_low_12
[»] chr4 (11 HSPs)
chr4 (1-222)||(55760029-55760250)
chr4 (176-247)||(31487170-31487240)
chr4 (175-247)||(29149153-29149225)
chr4 (175-247)||(11034597-11034669)
chr4 (176-247)||(3387353-3387424)
chr4 (176-247)||(21075732-21075803)
chr4 (176-247)||(22829652-22829723)
chr4 (176-247)||(42053405-42053476)
chr4 (264-298)||(55760251-55760285)
chr4 (176-249)||(14595202-14595275)
chr4 (176-245)||(34459770-34459839)
[»] chr2 (9 HSPs)
chr2 (174-251)||(29221330-29221407)
chr2 (174-251)||(29334629-29334706)
chr2 (6-81)||(38939537-38939612)
chr2 (176-248)||(44928830-44928902)
chr2 (176-247)||(32422885-32422956)
chr2 (262-297)||(44928812-44928847)
chr2 (175-245)||(668117-668187)
chr2 (257-289)||(15161926-15161958)
chr2 (175-247)||(25424642-25424714)
[»] chr5 (9 HSPs)
chr5 (176-251)||(6092728-6092803)
chr5 (176-251)||(20675036-20675111)
chr5 (196-248)||(15023457-15023509)
chr5 (176-247)||(33347219-33347290)
chr5 (175-248)||(4902083-4902156)
chr5 (174-247)||(14645207-14645279)
chr5 (174-247)||(15674122-15674195)
chr5 (257-289)||(33347208-33347240)
chr5 (195-247)||(35935224-35935276)
[»] chr3 (9 HSPs)
chr3 (176-249)||(30424715-30424788)
chr3 (174-253)||(5908117-5908196)
chr3 (176-247)||(24987555-24987626)
chr3 (176-251)||(30248198-30248273)
chr3 (176-247)||(44792791-44792862)
chr3 (176-249)||(19454673-19454746)
chr3 (204-248)||(2013200-2013244)
chr3 (175-251)||(27064079-27064155)
chr3 (176-220)||(46819048-46819092)
[»] chr8 (5 HSPs)
chr8 (179-251)||(34776870-34776942)
chr8 (176-248)||(7579950-7580022)
chr8 (177-247)||(3617009-3617079)
chr8 (177-247)||(24789406-24789476)
chr8 (195-247)||(38019960-38020012)
[»] chr7 (9 HSPs)
chr7 (177-245)||(11211325-11211393)
chr7 (180-247)||(39414481-39414548)
chr7 (175-247)||(19804936-19805008)
chr7 (176-247)||(16567466-16567537)
chr7 (176-247)||(16598125-16598196)
chr7 (176-247)||(28067415-28067486)
chr7 (176-247)||(46181112-46181183)
chr7 (180-253)||(27398483-27398556)
chr7 (195-247)||(40342460-40342512)
[»] scaffold0160 (1 HSPs)
scaffold0160 (176-247)||(26270-26341)
[»] chr1 (9 HSPs)
chr1 (176-247)||(48796429-48796500)
chr1 (176-247)||(13312625-13312696)
chr1 (176-247)||(14589961-14590032)
chr1 (176-247)||(25815471-25815542)
chr1 (176-218)||(6463310-6463352)
chr1 (249-290)||(48662592-48662633)
chr1 (177-245)||(7842460-7842528)
chr1 (195-251)||(20414879-20414935)
chr1 (197-249)||(48514345-48514397)
[»] chr6 (2 HSPs)
chr6 (176-251)||(3516307-3516383)
chr6 (176-251)||(9062281-9062357)
[»] scaffold0005 (1 HSPs)
scaffold0005 (176-249)||(222103-222176)


Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-112; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 55760029 - 55760250
Alignment:
Q  1 aatattgagggaaaaaacaataaatgaaattggagcaaagagaactcagactcagctgggttacaaaacaaagaaacaaaaggcaaaggaaagaaaggca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||    
T  55760029 aatattgagggaaaaaacaataaatgaaattggagcaaagagaactcagactcagatgggttacaaaacagagaaacaaaaggcaaaggaaagaaaggca 55760128  T
Q  101 catctgaatgagatgagtttattagaagtcaatctttatgttttccctttgttcgctagttattagtgtgattgctagggatggcaatggccccccaatg 200  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  55760129 catctgaatgagatgagtttattagaagtcaatctttctgttttccctttgttcgctagttattagtgtgattgctagggatggcaatgggcccccaatg 55760228  T
Q  201 gacagggtactataatgcccgt 222  Q
    ||||||||||||||||||||||    
T  55760229 gacagggtactataatgcccgt 55760250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 176 - 247
Target Start/End: Original strand, 31487170 - 31487240
Alignment:
Q  176 tagggatggcaatggccccccaatggacagggtactataatgcccgttctcatacccgcgtttgtaaaaaat 247  Q
    ||||||||||||| | |||||||||| |||| ||||||||||||||| |||||||||| |||||||||||||    
T  31487170 tagggatggcaatcggcccccaatgggcagg-tactataatgcccgtcctcatacccgtgtttgtaaaaaat 31487240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 175 - 247
Target Start/End: Complemental strand, 29149225 - 29149153
Alignment:
Q  175 ctagggatggcaatggccccccaatggacagggtactataatgcccgttctcatacccgcgtttgtaaaaaat 247  Q
    ||||||||||||||||   ||||||||| ||||||||| ||||||||| | ||||||||| ||| ||||||||    
T  29149225 ctagggatggcaatgggtacccaatggatagggtactacaatgcccgtccccatacccgcatttataaaaaat 29149153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 247
Target Start/End: Original strand, 11034597 - 11034669
Alignment:
Q  175 ctagggatggcaatggccccccaatggacagggtactataatgcccgttctcatacccgcgtttgtaaaaaat 247  Q
    ||||||||||||||||   |||||||| |||||||||||| | ||| | | |||||| |||||||||||||||    
T  11034597 ctagggatggcaatgggtacccaatgggcagggtactatagtacccatccccatacctgcgtttgtaaaaaat 11034669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 176 - 247
Target Start/End: Complemental strand, 3387424 - 3387353
Alignment:
Q  176 tagggatggcaatggccccccaatggacagggtactataatgcccgttctcatacccgcgtttgtaaaaaat 247  Q
    |||||||||||||||   ||||||||  ||||||||| ||||||||| | ||||||||| ||| ||||||||    
T  3387424 tagggatggcaatgggtacccaatgggtagggtactacaatgcccgtccccatacccgcatttataaaaaat 3387353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 176 - 247
Target Start/End: Original strand, 21075732 - 21075803
Alignment:
Q  176 tagggatggcaatggccccccaatggacagggtactataatgcccgttctcatacccgcgtttgtaaaaaat 247  Q
    |||||||||||||||   ||||||||| ||||||||| | ||||||| | ||||||||| ||| ||||||||    
T  21075732 tagggatggcaatgggtacccaatggatagggtactacagtgcccgtccccatacccgcatttataaaaaat 21075803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 176 - 247
Target Start/End: Original strand, 22829652 - 22829723
Alignment:
Q  176 tagggatggcaatggccccccaatggacagggtactataatgcccgttctcatacccgcgtttgtaaaaaat 247  Q
    |||||||||||||||   ||||||||  ||||||||||| | ||| | | ||||||||||||||||||||||    
T  22829652 tagggatggcaatgggtacccaatgggtagggtactatagtacccatccccatacccgcgtttgtaaaaaat 22829723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 176 - 247
Target Start/End: Complemental strand, 42053476 - 42053405
Alignment:
Q  176 tagggatggcaatggccccccaatggacagggtactataatgcccgttctcatacccgcgtttgtaaaaaat 247  Q
    |||||||||||||||   ||||||||  ||||||||| ||||||||| | ||||||||| ||| ||||||||    
T  42053476 tagggatggcaatgggtacccaatgggtagggtactacaatgcccgtccccatacccgcatttataaaaaat 42053405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 264 - 298
Target Start/End: Original strand, 55760251 - 55760285
Alignment:
Q  264 gcgtttgtaaaaaatatccgtacccgaacccatat 298  Q
    ||||||||||||||| |||||||||||||||||||    
T  55760251 gcgtttgtaaaaaatgtccgtacccgaacccatat 55760285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 249
Target Start/End: Original strand, 14595202 - 14595275
Alignment:
Q  176 tagggatggcaatggccccccaatggacagggtactataatgcccgttctcatacccgcgtttgtaaaaaatgc 249  Q
    |||||||||||||  || || ||||| ||||||| |||||| ||| ||| |||||||| |||||||| ||||||    
T  14595202 tagggatggcaatacccaccaaatgggcagggtattataataccctttcccatacccgtgtttgtaacaaatgc 14595275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 245
Target Start/End: Complemental strand, 34459839 - 34459770
Alignment:
Q  176 tagggatggcaatggccccccaatggacagggtactataatgcccgttctcatacccgcgtttgtaaaaa 245  Q
    |||||||||||||||   |||||| |  ||||||||||||||||| | ||||||||||| ||| ||||||    
T  34459839 tagggatggcaatgggtacccaataggtagggtactataatgcccatcctcatacccgcatttttaaaaa 34459770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 66; Significance: 4e-29; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 174 - 251
Target Start/End: Complemental strand, 29221407 - 29221330
Alignment:
Q  174 gctagggatggcaatggccccccaatggacagggtactataatgcccgttctcatacccgcgtttgtaaaaaatgccc 251  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||    
T  29221407 gctagggatggcaatgggcccccaatggacagggtactataatgcccgttcccatacccgcatttgtaaaaaatgccc 29221330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 174 - 251
Target Start/End: Complemental strand, 29334706 - 29334629
Alignment:
Q  174 gctagggatggcaatggccccccaatggacagggtactataatgcccgttctcatacccgcgtttgtaaaaaatgccc 251  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||    
T  29334706 gctagggatggcaatgggcccccaatggacagggtactataatgcccgttcccatacccgcatttgtaaaaaatgccc 29334629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 6 - 81
Target Start/End: Complemental strand, 38939612 - 38939537
Alignment:
Q  6 tgagggaaaaaacaataaatgaaattggagcaaagagaactcagactcagctgggttacaaaacaaagaaacaaaa 81  Q
    ||||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||| ||||||||||    
T  38939612 tgagggaaaaaacaataaatgaaatcggtgcaaagagaactcaaactcagctgggttacaaaacagagaaacaaaa 38939537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 176 - 248
Target Start/End: Complemental strand, 44928902 - 44928830
Alignment:
Q  176 tagggatggcaatggccccccaatggacagggtactataatgcccgttctcatacccgcgtttgtaaaaaatg 248  Q
    |||||||| ||||||  ||||||| | ||||||||||||||| || | | | |||||||||||||||||||||    
T  44928902 tagggatgacaatgggtccccaataggcagggtactataatgtccttccccgtacccgcgtttgtaaaaaatg 44928830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 176 - 247
Target Start/End: Complemental strand, 32422956 - 32422885
Alignment:
Q  176 tagggatggcaatggccccccaatggacagggtactataatgcccgttctcatacccgcgtttgtaaaaaat 247  Q
    |||||||||||||||   ||||||||| | ||||||| ||||||||| | ||||||||| ||| ||||||||    
T  32422956 tagggatggcaatgggtacccaatggatacggtactacaatgcccgtccccatacccgcatttataaaaaat 32422885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 262 - 297
Target Start/End: Complemental strand, 44928847 - 44928812
Alignment:
Q  262 ccgcgtttgtaaaaaatatccgtacccgaacccata 297  Q
    ||||||||||||||||| ||||||||||||||||||    
T  44928847 ccgcgtttgtaaaaaatgtccgtacccgaacccata 44928812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 175 - 245
Target Start/End: Complemental strand, 668187 - 668117
Alignment:
Q  175 ctagggatggcaatggccccccaatggacagggtactataatgcccgttctcatacccgcgtttgtaaaaa 245  Q
    ||||||||||||||||   ||||||||  ||||||||| ||||||| | ||||||||| | ||||||||||    
T  668187 ctagggatggcaatgggtacccaatgggtagggtactacaatgcccatcctcatacccacatttgtaaaaa 668117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 257 - 289
Target Start/End: Original strand, 15161926 - 15161958
Alignment:
Q  257 catatccgcgtttgtaaaaaatatccgtacccg 289  Q
    |||||||||||||||||||||| ||||||||||    
T  15161926 catatccgcgtttgtaaaaaatgtccgtacccg 15161958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 247
Target Start/End: Original strand, 25424642 - 25424714
Alignment:
Q  175 ctagggatggcaatggccccccaatggacagggtactataatgcccgttctcatacccgcgtttgtaaaaaat 247  Q
    ||||||||||||||||   ||||||||  ||||||||| |||| |||| | ||||||||| ||| ||||||||    
T  25424642 ctagggatggcaatgggtacccaatgggtagggtactacaatgtccgtccccatacccgcatttataaaaaat 25424714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 176 - 251
Target Start/End: Original strand, 6092728 - 6092803
Alignment:
Q  176 tagggatggcaatggccccccaatggacagggtactataatgcccgttctcatacccgcgtttgtaaaaaatgccc 251  Q
    |||||||||||||||||||||||||| |||||||||||||||||||| |  |||||||||||||||||||||||||    
T  6092728 tagggatggcaatggccccccaatgggcagggtactataatgcccgtcccgatacccgcgtttgtaaaaaatgccc 6092803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 176 - 251
Target Start/End: Complemental strand, 20675111 - 20675036
Alignment:
Q  176 tagggatggcaatggccccccaatggacagggtactataatgcccgttctcatacccgcgtttgtaaaaaatgccc 251  Q
    ||||||||||||||| |||||||||| ||||||||||||||||| || |   ||||||||||||||||||||||||    
T  20675111 tagggatggcaatgggcccccaatgggcagggtactataatgcctgtccctgtacccgcgtttgtaaaaaatgccc 20675036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 196 - 248
Target Start/End: Complemental strand, 15023509 - 15023457
Alignment:
Q  196 caatggacagggtactataatgcccgttctcatacccgcgtttgtaaaaaatg 248  Q
    |||||| |||||||||||||||||||| | |||||| ||||||||||||||||    
T  15023509 caatgggcagggtactataatgcccgtccccataccggcgtttgtaaaaaatg 15023457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 176 - 247
Target Start/End: Complemental strand, 33347290 - 33347219
Alignment:
Q  176 tagggatggcaatggccccccaatggacagggtactataatgcccgttctcatacccgcgtttgtaaaaaat 247  Q
    |||||||||||||||   |||||||| |||||||||||| | ||| | | |||| |||||||||||||||||    
T  33347290 tagggatggcaatgggtacccaatgggcagggtactatagtacccatccccatatccgcgtttgtaaaaaat 33347219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 248
Target Start/End: Complemental strand, 4902156 - 4902083
Alignment:
Q  175 ctagggatggcaatggccccccaatggacagggtactataatgcccgttctcatacccgcgtttgtaaaaaatg 248  Q
    |||||||||||||||| | |||||||   ||||||||||| | | | | | |||||||||||||||||||||||    
T  4902156 ctagggatggcaatgggcacccaatgagtagggtactatagtactcatccccatacccgcgtttgtaaaaaatg 4902083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 247
Target Start/End: Original strand, 14645207 - 14645279
Alignment:
Q  174 gctagggatggcaatggccccccaatggacagggtactataatgcccgttctcatacccgcgtttgtaaaaaat 247  Q
    |||||||||||||||||   ||||||||  ||||||||| |||||||| || ||||||||| ||| ||||||||    
T  14645207 gctagggatggcaatgggtacccaatgggtagggtactacaatgcccg-tcccatacccgcatttataaaaaat 14645279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 247
Target Start/End: Complemental strand, 15674195 - 15674122
Alignment:
Q  174 gctagggatggcaatggccccccaatggacagggtactataatgcccgttctcatacccgcgtttgtaaaaaat 247  Q
    |||||||||| ||||||    ||||||| |||||||||||| | ||| | | ||||||||||||||||||||||    
T  15674195 gctagggatgacaatgggtatccaatgggcagggtactatagtacccatccccatacccgcgtttgtaaaaaat 15674122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 257 - 289
Target Start/End: Complemental strand, 33347240 - 33347208
Alignment:
Q  257 catatccgcgtttgtaaaaaatatccgtacccg 289  Q
    |||||||||||||||||||||||| ||||||||    
T  33347240 catatccgcgtttgtaaaaaatattcgtacccg 33347208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 247
Target Start/End: Original strand, 35935224 - 35935276
Alignment:
Q  195 ccaatggacagggtactataatgcccgttctcatacccgcgtttgtaaaaaat 247  Q
    ||||||| |||||||||||| | ||| | ||||||||| ||||||||||||||    
T  35935224 ccaatgggcagggtactatactacccatcctcatacccacgtttgtaaaaaat 35935276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 176 - 249
Target Start/End: Original strand, 30424715 - 30424788
Alignment:
Q  176 tagggatggcaatggccccccaatggacagggtactataatgcccgttctcatacccgcgtttgtaaaaaatgc 249  Q
    ||||||||||||||| ||| |||||||||||||||||||||||| || | ||||| ||||||||||||||||||    
T  30424715 tagggatggcaatgggccctcaatggacagggtactataatgcctgtccccatactcgcgtttgtaaaaaatgc 30424788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 174 - 253
Target Start/End: Original strand, 5908117 - 5908196
Alignment:
Q  174 gctagggatggcaatggccccccaatggacagggtactataatgcccgttctcatacccgcgtttgtaaaaaatgcccat 253  Q
    |||||||||||||||||   ||||||||  ||||||||||| |  || | | ||||||||||||||||||||||||||||    
T  5908117 gctagggatggcaatgggtacccaatgggtagggtactatagtatccatccccatacccgcgtttgtaaaaaatgcccat 5908196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 176 - 247
Target Start/End: Complemental strand, 24987626 - 24987555
Alignment:
Q  176 tagggatggcaatggccccccaatggacagggtactataatgcccgttctcatacccgcgtttgtaaaaaat 247  Q
    |||||||||||||||   ||||||||  ||||||||| ||||||||| | ||||||||| ||| ||||||||    
T  24987626 tagggatggcaatgggtacccaatgggtagggtactacaatgcccgtccccatacccgcatttataaaaaat 24987555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 176 - 251
Target Start/End: Complemental strand, 30248273 - 30248198
Alignment:
Q  176 tagggatggcaatggccccccaatggacagggtactataatgcccgttctcatacccgcgtttgtaaaaaatgccc 251  Q
    |||||||||||||||   ||||||||| ||||||||||| | ||| | | ||||||| | ||||||||||||||||    
T  30248273 tagggatggcaatgggtacccaatggatagggtactatagtacccatccccataccctcatttgtaaaaaatgccc 30248198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 176 - 247
Target Start/End: Complemental strand, 44792862 - 44792791
Alignment:
Q  176 tagggatggcaatggccccccaatggacagggtactataatgcccgttctcatacccgcgtttgtaaaaaat 247  Q
    |||||||||||||||   ||||||||  ||||||||| ||||||||| | ||||||||| ||| ||||||||    
T  44792862 tagggatggcaatgggtacccaatgggtagggtactacaatgcccgtccccatacccgcatttataaaaaat 44792791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 249
Target Start/End: Original strand, 19454673 - 19454746
Alignment:
Q  176 tagggatggcaatggccccccaatggacagggtactataatgcccgttctcatacccgcgtttgtaaaaaatgc 249  Q
    |||||||||||||||   ||||||||| ||||||||||| | ||| | | ||| || |||||||||||||||||    
T  19454673 tagggatggcaatgggtacccaatggatagggtactatagtacccatccccatgcctgcgtttgtaaaaaatgc 19454746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 248
Target Start/End: Complemental strand, 2013244 - 2013200
Alignment:
Q  204 agggtactataatgcccgttctcatacccgcgtttgtaaaaaatg 248  Q
    ||||||||||||| ||| | ||||||||||||||||||| |||||    
T  2013244 agggtactataatacccttcctcatacccgcgtttgtaagaaatg 2013200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 251
Target Start/End: Original strand, 27064079 - 27064155
Alignment:
Q  175 ctagggatggcaatggccccccaatggacagggtactataatgcccgttctcatacccgcgtttgtaaaaaatgccc 251  Q
    ||||||||| ||||||   ||||||||  ||||||| ||| | ||| | | ||||||||||||||||||||||||||    
T  27064079 ctagggatgacaatgggtacccaatgggtagggtacaatagtacccttccccatacccgcgtttgtaaaaaatgccc 27064155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 176 - 220
Target Start/End: Original strand, 46819048 - 46819092
Alignment:
Q  176 tagggatggcaatggccccccaatggacagggtactataatgccc 220  Q
    |||||||||||||||   ||||||||| |||||||||||||||||    
T  46819048 tagggatggcaatgggtacccaatggatagggtactataatgccc 46819092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 5e-19; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 179 - 251
Target Start/End: Complemental strand, 34776942 - 34776870
Alignment:
Q  179 ggatggcaatggccccccaatggacagggtactataatgcccgttctcatacccgcgtttgtaaaaaatgccc 251  Q
    |||||||||||| | |||||||| |||||||||||||||||||| |  |||||||||||||||||||||||||    
T  34776942 ggatggcaatgggctcccaatgggcagggtactataatgcccgtcccgatacccgcgtttgtaaaaaatgccc 34776870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 176 - 248
Target Start/End: Original strand, 7579950 - 7580022
Alignment:
Q  176 tagggatggcaatggccccccaatggacagggtactataatgcccgttctcatacccgcgtttgtaaaaaatg 248  Q
    ||||||||||||||| | ||||||||  ||||||||||| | ||| | | |||||||| ||||||||||||||    
T  7579950 tagggatggcaatgggcacccaatgggtagggtactatagtacccatccccatacccgtgtttgtaaaaaatg 7580022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 177 - 247
Target Start/End: Complemental strand, 3617079 - 3617009
Alignment:
Q  177 agggatggcaatggccccccaatggacagggtactataatgcccgttctcatacccgcgtttgtaaaaaat 247  Q
    ||||||||||||||   ||||||||  ||||||||||| ||||||| | ||||||||| ||| ||||||||    
T  3617079 agggatggcaatgggtgcccaatgggtagggtactatagtgcccgtccccatacccgcatttataaaaaat 3617009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 177 - 247
Target Start/End: Original strand, 24789406 - 24789476
Alignment:
Q  177 agggatggcaatggccccccaatggacagggtactataatgcccgttctcatacccgcgtttgtaaaaaat 247  Q
    ||||||||||||||   || |||||  ||||||||| ||||||||| ||||||||||| ||| ||||||||    
T  24789406 agggatggcaatgggtaccaaatgggtagggtactacaatgcccgtcctcatacccgcatttataaaaaat 24789476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 247
Target Start/End: Original strand, 38019960 - 38020012
Alignment:
Q  195 ccaatggacagggtactataatgcccgttctcatacccgcgtttgtaaaaaat 247  Q
    ||||||| |||||||||||| | ||| | | ||||||||||||||||||||||    
T  38019960 ccaatgggcagggtactatagtacccatccccatacccgcgtttgtaaaaaat 38020012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 177 - 245
Target Start/End: Complemental strand, 11211393 - 11211325
Alignment:
Q  177 agggatggcaatggccccccaatggacagggtactataatgcccgttctcatacccgcgtttgtaaaaa 245  Q
    |||||||||||||| ||||||||||  |||||||||||||||| || | ||||||||||||||||||||    
T  11211393 agggatggcaatggacccccaatgggtagggtactataatgcctgtccccatacccgcgtttgtaaaaa 11211325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 180 - 247
Target Start/End: Original strand, 39414481 - 39414548
Alignment:
Q  180 gatggcaatggccccccaatggacagggtactataatgcccgttctcatacccgcgtttgtaaaaaat 247  Q
    |||||||||||   ||||||||| ||||||||| ||||||||||| ||||||||| ||| ||||||||    
T  39414481 gatggcaatgggtacccaatggatagggtactacaatgcccgttcccatacccgcatttataaaaaat 39414548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 247
Target Start/End: Original strand, 19804936 - 19805008
Alignment:
Q  175 ctagggatggcaatggccccccaatggacagggtactataatgcccgttctcatacccgcgtttgtaaaaaat 247  Q
    ||||||||||||||||   ||||||||  ||||||||| | ||||||| ||||||||||| ||| ||||||||    
T  19804936 ctagggatggcaatgggtacccaatgggtagggtactacagtgcccgtcctcatacccgcatttataaaaaat 19805008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 176 - 247
Target Start/End: Original strand, 16567466 - 16567537
Alignment:
Q  176 tagggatggcaatggccccccaatggacagggtactataatgcccgttctcatacccgcgtttgtaaaaaat 247  Q
    |||||||||||||||   ||||||||  ||||||||| ||||||||| | ||||||||| ||| ||||||||    
T  16567466 tagggatggcaatgggtacccaatgggtagggtactacaatgcccgtccccatacccgcatttataaaaaat 16567537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 176 - 247
Target Start/End: Complemental strand, 16598196 - 16598125
Alignment:
Q  176 tagggatggcaatggccccccaatggacagggtactataatgcccgttctcatacccgcgtttgtaaaaaat 247  Q
    |||||||||||||||   ||||||||  ||||||||| ||||||||| | ||||||||| ||| ||||||||    
T  16598196 tagggatggcaatgggtacccaatgggtagggtactacaatgcccgtccccatacccgcatttataaaaaat 16598125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 176 - 247
Target Start/End: Complemental strand, 28067486 - 28067415
Alignment:
Q  176 tagggatggcaatggccccccaatggacagggtactataatgcccgttctcatacccgcgtttgtaaaaaat 247  Q
    |||||||||||||||   |||||||| |||||||| ||| | ||| | | ||||||||||||||||||||||    
T  28067486 tagggatggcaatgggtacccaatgggcagggtacaatagtacccatccccatacccgcgtttgtaaaaaat 28067415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 176 - 247
Target Start/End: Original strand, 46181112 - 46181183
Alignment:
Q  176 tagggatggcaatggccccccaatggacagggtactataatgcccgttctcatacccgcgtttgtaaaaaat 247  Q
    |||||||||||||||   ||||||||  ||||||||| ||||||||| | ||||||||| ||| ||||||||    
T  46181112 tagggatggcaatgggtacccaatgggtagggtactacaatgcccgtccccatacccgcatttataaaaaat 46181183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 253
Target Start/End: Original strand, 27398483 - 27398556
Alignment:
Q  180 gatggcaatggccccccaatggacagggtactataatgcccgttctcatacccgcgtttgtaaaaaatgcccat 253  Q
    |||||||||||   ||||||||| ||||||||| ||||||||| | ||||||||  ||| |||||||| |||||    
T  27398483 gatggcaatgggtgcccaatggatagggtactacaatgcccgtccccatacccgtatttataaaaaatacccat 27398556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 247
Target Start/End: Complemental strand, 40342512 - 40342460
Alignment:
Q  195 ccaatggacagggtactataatgcccgttctcatacccgcgtttgtaaaaaat 247  Q
    |||||||  ||||||||||| | ||| ||||||||| ||||||||||||||||    
T  40342512 ccaatgggtagggtactatagtacccattctcatacacgcgtttgtaaaaaat 40342460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0160 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0160
Description:

Target: scaffold0160; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 176 - 247
Target Start/End: Complemental strand, 26341 - 26270
Alignment:
Q  176 tagggatggcaatggccccccaatggacagggtactataatgcccgttctcatacccgcgtttgtaaaaaat 247  Q
    |||||||||||||||   ||||||||| ||||||||||| | ||| | | ||||||||||||||||||||||    
T  26341 tagggatggcaatgggtacccaatggatagggtactatagtacccatccccatacccgcgtttgtaaaaaat 26270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 176 - 247
Target Start/End: Original strand, 48796429 - 48796500
Alignment:
Q  176 tagggatggcaatggccccccaatggacagggtactataatgcccgttctcatacccgcgtttgtaaaaaat 247  Q
    |||||||| ||||||   |||||||| |||||||||||| | ||| ||| ||||||||||||||||||||||    
T  48796429 tagggatgacaatgggtacccaatgggcagggtactatagtacccattcccatacccgcgtttgtaaaaaat 48796500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 176 - 247
Target Start/End: Original strand, 13312625 - 13312696
Alignment:
Q  176 tagggatggcaatggccccccaatggacagggtactataatgcccgttctcatacccgcgtttgtaaaaaat 247  Q
    |||||||||||||||   ||||||||  ||||||||| ||||||||| | ||||||||| ||| ||||||||    
T  13312625 tagggatggcaatgggtacccaatgggtagggtactacaatgcccgtccccatacccgcatttataaaaaat 13312696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 176 - 247
Target Start/End: Complemental strand, 14590032 - 14589961
Alignment:
Q  176 tagggatggcaatggccccccaatggacagggtactataatgcccgttctcatacccgcgtttgtaaaaaat 247  Q
    ||||||||||||||   ||||||||| ||||||||||||||||  || | ||||||||  ||||||||||||    
T  14590032 tagggatggcaatgcgtccccaatgggcagggtactataatgcttgtccccatacccgtatttgtaaaaaat 14589961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 176 - 247
Target Start/End: Complemental strand, 25815542 - 25815471
Alignment:
Q  176 tagggatggcaatggccccccaatggacagggtactataatgcccgttctcatacccgcgtttgtaaaaaat 247  Q
    |||||||||||||||   ||||||||  ||||||||| ||||||||| | ||||||||| ||| ||||||||    
T  25815542 tagggatggcaatgggtacccaatgggtagggtactacaatgcccgtccccatacccgcatttataaaaaat 25815471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 176 - 218
Target Start/End: Original strand, 6463310 - 6463352
Alignment:
Q  176 tagggatggcaatggccccccaatggacagggtactataatgc 218  Q
    |||||||||||| || |||||||||| ||||||||||||||||    
T  6463310 tagggatggcaacgggcccccaatgggcagggtactataatgc 6463352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 290
Target Start/End: Original strand, 48662592 - 48662633
Alignment:
Q  249 cccattttcatatccgcgtttgtaaaaaatatccgtacccga 290  Q
    ||||||| |||| | |||||||||||||||||||||||||||    
T  48662592 cccatttccatacctgcgtttgtaaaaaatatccgtacccga 48662633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 245
Target Start/End: Original strand, 7842460 - 7842528
Alignment:
Q  177 agggatggcaatggccccccaatggacagggtactataatgcccgttctcatacccgcgtttgtaaaaa 245  Q
    ||||||||||||||   ||||||||| ||||||||| ||||||| | | ||||||||| | ||||||||    
T  7842460 agggatggcaatgggtacccaatggatagggtactacaatgcccatccccatacccgcatctgtaaaaa 7842528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 251
Target Start/End: Original strand, 20414879 - 20414935
Alignment:
Q  195 ccaatggacagggtactataatgcccgttctcatacccgcgtttgtaaaaaatgccc 251  Q
    |||||||| ||||||||||||| ||| | | ||||||| | ||||||||||||||||    
T  20414879 ccaatggatagggtactataatacccatccccataccctcatttgtaaaaaatgccc 20414935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 249
Target Start/End: Original strand, 48514345 - 48514397
Alignment:
Q  197 aatggacagggtactataatgcccgttctcatacccgcgtttgtaaaaaatgc 249  Q
    |||||| ||||||||||| |  || ||| ||||||||||||||||||||||||    
T  48514345 aatggatagggtactatagtatccattcccatacccgcgtttgtaaaaaatgc 48514397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 176 - 251
Target Start/End: Complemental strand, 3516383 - 3516307
Alignment:
Q  176 tagggatggcaatggccccccaatggacagggtactataatgcccgt-tctcatacccgcgtttgtaaaaaatgccc 251  Q
    ||||||||||||||| ||| |||||| ||||||||| ||||||| ||  | | |||| |||||||||||||||||||    
T  3516383 tagggatggcaatgggccctcaatgggcagggtactgtaatgcctgtcccccgtacctgcgtttgtaaaaaatgccc 3516307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 176 - 251
Target Start/End: Complemental strand, 9062357 - 9062281
Alignment:
Q  176 tagggatggcaatggcc-ccccaatggacagggtactataatgcccgttctcatacccgcgtttgtaaaaaatgccc 251  Q
    |||||||||||||||   |||||||||| ||||||||||| |  || | | ||||||||||||||||||||||||||    
T  9062357 tagggatggcaatgggtaccccaatggatagggtactatagtatccatccccatacccgcgtttgtaaaaaatgccc 9062281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 249
Target Start/End: Complemental strand, 222176 - 222103
Alignment:
Q  176 tagggatggcaatggccccccaatggacagggtactataatgcccgttctcatacccgcgtttgtaaaaaatgc 249  Q
    |||||||||||||  || || ||||| ||||||| |||||| ||| ||| |||||||| |||||||| ||||||    
T  222176 tagggatggcaatacccaccaaatgggcagggtattataataccctttcccatacccgtgtttgtaacaaatgc 222103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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