View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10582_low_15 (Length: 274)

Name: NF10582_low_15
Description: NF10582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10582_low_15
NF10582_low_15
[»] chr3 (5 HSPs)
chr3 (18-261)||(47743963-47744204)
chr3 (40-161)||(32813736-32813857)
chr3 (40-166)||(55418553-55418677)
chr3 (40-145)||(531393-531498)
chr3 (40-165)||(27237747-27237878)
[»] chr6 (5 HSPs)
chr6 (40-170)||(7501207-7501337)
chr6 (43-165)||(31888660-31888782)
chr6 (40-165)||(367160-367287)
chr6 (40-165)||(7534293-7534421)
chr6 (40-114)||(369060-369136)
[»] chr5 (7 HSPs)
chr5 (40-170)||(9503814-9503944)
chr5 (43-166)||(34854226-34854349)
chr5 (40-166)||(32090369-32090495)
chr5 (40-165)||(9507796-9507921)
chr5 (50-165)||(3627663-3627779)
chr5 (63-165)||(43095251-43095354)
chr5 (40-165)||(2357514-2357639)
[»] chr2 (12 HSPs)
chr2 (40-165)||(13273448-13273573)
chr2 (40-170)||(45496891-45497021)
chr2 (40-170)||(45504633-45504763)
chr2 (40-170)||(21794328-21794458)
chr2 (40-165)||(43081477-43081602)
chr2 (40-164)||(1645171-1645297)
chr2 (47-165)||(45485631-45485749)
chr2 (40-165)||(5989550-5989677)
chr2 (40-116)||(18164097-18164173)
chr2 (40-165)||(4285198-4285323)
chr2 (40-170)||(5983593-5983725)
chr2 (100-142)||(31468930-31468972)
[»] chr8 (2 HSPs)
chr8 (40-170)||(11096290-11096420)
chr8 (40-170)||(14685463-14685591)
[»] chr4 (3 HSPs)
chr4 (40-156)||(28571349-28571465)
chr4 (40-165)||(53011323-53011450)
chr4 (40-170)||(53008429-53008561)
[»] chr7 (3 HSPs)
chr7 (40-142)||(35323887-35323991)
chr7 (44-165)||(22582180-22582302)
chr7 (78-165)||(35703408-35703495)
[»] chr1 (2 HSPs)
chr1 (41-156)||(10917045-10917162)
chr1 (115-165)||(3709511-3709561)
[»] scaffold0014 (1 HSPs)
scaffold0014 (100-142)||(34602-34644)


Alignment Details
Target: chr3 (Bit Score: 184; Significance: 1e-99; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 18 - 261
Target Start/End: Original strand, 47743963 - 47744204
Alignment:
Q  18 caattcaataaaaatttacaggaagtcttttactcatatctcttttctctctcaaaaccatagaaacgcagaatctcaattccatcttcttcaattgaac 117  Q
    ||||||||||||||||||||  || |||||||||| ||||||||||||||||||||||||||||||  || |||||||||||||||||||| ||||||||    
T  47743963 caattcaataaaaatttacacaaa-tcttttactcgtatctcttttctctctcaaaaccatagaaatccataatctcaattccatcttctttaattgaac 47744061  T
Q  118 acagttttaattgttgttttcattctaatttcatacatttttccatcacattgtaattaaattgattgcaattactgaagtatcttttgtcaaaccagct 217  Q
    |||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||    
T  47744062 acagttttaagtgttggtttcattctaatttcatacatttttccatcacattgtaattaaattgattgcaataactgaagtatcttttctcaaaccagct 47744161  T
Q  218 atacttcatattccaccataaagaatccaactaaaataagctct 261  Q
    |||||||||||||||||||||||||||||||| |||||||||||    
T  47744162 atacttcatattccaccataaagaatccaact-aaataagctct 47744204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 40 - 161
Target Start/End: Original strand, 32813736 - 32813857
Alignment:
Q  40 aagtcttttactcatatctcttttctctctcaaaaccatagaaacgcagaatctcaattccatcttcttcaattgaacacagttttaattgttgttttca 139  Q
    |||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| ||||||||| || || |||||    
T  32813736 aagtctgttactcatatctctgttctctctcaaaaccatagaaacccagaatctcaatttcatcttcttcaattgaactcagttttaagtgctggtttca 32813835  T
Q  140 ttctaatttcatacatttttcc 161  Q
    ||||||||||||||||| ||||    
T  32813836 ttctaatttcatacattattcc 32813857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 40 - 166
Target Start/End: Original strand, 55418553 - 55418677
Alignment:
Q  40 aagtcttttactcatatctcttttctctctcaaaaccatagaaacgcagaatctcaattccatcttcttcaattgaacacagttttaattgttgttttca 139  Q
    |||||||||||||||  ||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |||||| |   | |||||    
T  55418553 aagtcttttactcat--ctcttttctctctcaaaaccatataaacccagaatctcaattccatcttcttcaattgaacacaattttaagtaccggtttca 55418650  T
Q  140 ttctaatttcatacatttttccatcac 166  Q
    ||||||||||||||||| |||||||||    
T  55418651 ttctaatttcatacattgttccatcac 55418677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 40 - 145
Target Start/End: Complemental strand, 531498 - 531393
Alignment:
Q  40 aagtcttttactcatatctcttttctctctcaaaaccatagaaacgcagaatctcaattccatcttcttcaattgaacacagttttaattgttgttttca 139  Q
    ||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |||||||| || || |||||    
T  531498 aagtcttttactcatatatcttttctctctcaaaaccatagaaacccagaatctcaattccatcttcttcaatcgaacaaagttttaagtgctggtttca 531399  T
Q  140 ttctaa 145  Q
    ||||||    
T  531398 ttctaa 531393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 40 - 165
Target Start/End: Original strand, 27237747 - 27237878
Alignment:
Q  40 aagtcttttactcatatctct-tttctctctcaaaaccata----gaaacgc-agaatctcaattccatcttcttcaattgaacacagttttaattgttg 133  Q
    ||||||||||||||||||||| |||||||||||||||||||    ||||| | ||||||||||||||||||||||||||||||||||||||||| |||||    
T  27237747 aagtcttttactcatatctctctttctctctcaaaaccatatatagaaaccctagaatctcaattccatcttcttcaattgaacacagttttaagtgttg 27237846  T
Q  134 ttttcattctaatttcatacatttttccatca 165  Q
     |||||||| | ||| ||||||| || |||||    
T  27237847 gtttcattcaatttttatacattgttgcatca 27237878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 107; Significance: 1e-53; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 40 - 170
Target Start/End: Complemental strand, 7501337 - 7501207
Alignment:
Q  40 aagtcttttactcatatctcttttctctctcaaaaccatagaaacgcagaatctcaattccatcttcttcaattgaacacagttttaattgttgttttca 139  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||  ||||| |||||    
T  7501337 aagtcttttactcatatctcttttctctctcaaaaccatagaaacccagaatctcaattccatcttcttcaattgaacacagttttaggtgttggtttca 7501238  T
Q  140 ttctaatttcatacatttttccatcacattg 170  Q
    ||||||||||||||||| |||||||| ||||    
T  7501237 ttctaatttcatacattgttccatcaaattg 7501207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 43 - 165
Target Start/End: Original strand, 31888660 - 31888782
Alignment:
Q  43 tcttttactcatatctcttttctctctcaaaaccatagaaacgcagaatctcaattccatcttcttcaattgaacacagttttaattgttgttttcattc 142  Q
    ||||||||||||||||||||||| |||||||||||||||||| || ||| ||| ||||||||||||||||||||| ||||||||| ||||| ||||||||    
T  31888660 tcttttactcatatctcttttctttctcaaaaccatagaaacccaaaatttcagttccatcttcttcaattgaacccagttttaagtgttggtttcattc 31888759  T
Q  143 taatttcatacatttttccatca 165  Q
     |||||||||||||||| |||||    
T  31888760 caatttcatacattttttcatca 31888782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 40 - 165
Target Start/End: Complemental strand, 367287 - 367160
Alignment:
Q  40 aagtcttttactcatatctct-tttctctctcaaaaccatagaaacgc-agaatctcaattccatcttcttcaattgaacacagttttaattgttgtttt 137  Q
    ||||||||||||||||||||| ||||||||||||||||||| ||||   ||||||||||||||||||||||||||||||||||||||||| ||||| |||    
T  367287 aagtcttttactcatatctctctttctctctcaaaaccatataaaccttagaatctcaattccatcttcttcaattgaacacagttttaaatgttggttt 367188  T
Q  138 cattctaatttcatacatttttccatca 165  Q
    ||||| | ||||||||||| ||| ||||    
T  367187 cattcaattttcatacattgttctatca 367160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 40 - 165
Target Start/End: Original strand, 7534293 - 7534421
Alignment:
Q  40 aagtcttttactcatatctct--tttctctctcaaaaccatagaaacgc-agaatctcaattccatcttcttcaattgaacacagttttaattgttgttt 136  Q
    |||||||||||||||||||||  ||||||||||||||| |||||||| | ||||||||||||||||||| |||||||||| |||| ||||| ||||| ||    
T  7534293 aagtcttttactcatatctctcttttctctctcaaaactatagaaaccctagaatctcaattccatctttttcaattgaatacagatttaagtgttggtt 7534392  T
Q  137 tcattctaatttcatacatttttccatca 165  Q
    |||||| | ||||||||||| ||||||||    
T  7534393 tcattcaattttcatacattgttccatca 7534421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 40 - 114
Target Start/End: Complemental strand, 369136 - 369060
Alignment:
Q  40 aagtcttttactcatatctct-tttctctctcaaaaccatagaaacgc-agaatctcaattccatcttcttcaattg 114  Q
    ||||||||||||||||||||| |||||||||||||| ||||||||| | ||||||||||||||||||||||||||||    
T  369136 aagtcttttactcatatctctctttctctctcaaaatcatagaaaccctagaatctcaattccatcttcttcaattg 369060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 99; Significance: 6e-49; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 40 - 170
Target Start/End: Original strand, 9503814 - 9503944
Alignment:
Q  40 aagtcttttactcatatctcttttctctctcaaaaccatagaaacgcagaatctcaattccatcttcttcaattgaacacagttttaattgttgttttca 139  Q
    ||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| || || |||||    
T  9503814 aagtcttttactcatatctctgttctctctcaaaaccatagaaacccagaatctcaattccatcttcttcaattgaactcagttttaagtgctggtttca 9503913  T
Q  140 ttctaatttcatacatttttccatcacattg 170  Q
    ||||||||||||||||| |||||||| ||||    
T  9503914 ttctaatttcatacattgttccatcaaattg 9503944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 43 - 166
Target Start/End: Original strand, 34854226 - 34854349
Alignment:
Q  43 tcttttactcatatctcttttctctctcaaaaccatagaaacgcagaatctcaattccatcttcttcaattgaacacagttttaattgttgttttcattc 142  Q
    ||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| || || ||||||||    
T  34854226 tcttttactcatatctcttttctctctaaaaaccatagaaacccagaatctcaattccatcttcttcaattgaacatagttttaagtgctggtttcattc 34854325  T
Q  143 taatttcatacatttttccatcac 166  Q
    |||||||||||||| |||||||||    
T  34854326 taatttcatacattgttccatcac 34854349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 40 - 166
Target Start/End: Original strand, 32090369 - 32090495
Alignment:
Q  40 aagtcttttactcatatctcttttctctctcaaaaccatagaaacgcagaatctcaattccatcttcttcaattgaacacagttttaattgttgttttca 139  Q
    ||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| || || |||||    
T  32090369 aagtcttttactcatatctctgttctctctcaaaaccatagaaacccagaatctcaattccatcttcttcaattgaactcagttttaagtgctggtttca 32090468  T
Q  140 ttctaatttcatacatttttccatcac 166  Q
    |||||||||||| |||| |||||||||    
T  32090469 ttctaatttcattcattgttccatcac 32090495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 40 - 165
Target Start/End: Original strand, 9507796 - 9507921
Alignment:
Q  40 aagtcttttactcatatctcttttctctctcaaaaccatagaaacgcagaatctcaattccatcttcttcaattgaacacagttttaattgttgttttca 139  Q
    ||||||||||||||||||||| |||||||||||||||||| |||| |||||||||||||||||||||||||||||||| ||||||||| ||||| |||||    
T  9507796 aagtcttttactcatatctctgttctctctcaaaaccataaaaacccagaatctcaattccatcttcttcaattgaactcagttttaagtgttggtttca 9507895  T
Q  140 ttctaatttcatacatttttccatca 165  Q
    ||||||||||||||||| || |||||    
T  9507896 ttctaatttcatacattgttacatca 9507921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 50 - 165
Target Start/End: Original strand, 3627663 - 3627779
Alignment:
Q  50 ctcatatctcttttctctctcaaaa--ccatagaaacgcagaatctcaattccatcttcttcaattgaacacagttttaattgttgttttcattctaatt 147  Q
    ||||||||| |||||||||||||||  |||||||||| || |||||||||| |||||||||||||||||||||||||||| || || |||||||||||||    
T  3627663 ctcatatct-ttttctctctcaaaaaaccatagaaacccataatctcaatttcatcttcttcaattgaacacagttttaagtgctggtttcattctaatt 3627761  T
Q  148 tcatacatttttccatca 165  Q
    ||||||||| ||||||||    
T  3627762 tcatacattgttccatca 3627779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 63 - 165
Target Start/End: Original strand, 43095251 - 43095354
Alignment:
Q  63 tctctctcaaaaccatagaaacgc-agaatctcaattccatcttcttcaattgaacacagttttaattgttgttttcattctaatttcatacatttttcc 161  Q
    ||||||||||| | |||||||| | ||||||||||||| ||||||||||||||||||||||||||| ||||| |||||||| | ||||||||||| ||||    
T  43095251 tctctctcaaaccaatagaaaccctagaatctcaattcaatcttcttcaattgaacacagttttaagtgttggtttcattcaattttcatacattgttcc 43095350  T
Q  162 atca 165  Q
    ||||    
T  43095351 atca 43095354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 40 - 165
Target Start/End: Complemental strand, 2357639 - 2357514
Alignment:
Q  40 aagtcttttactcatatctcttttctctctcaaaaccatagaaacgc-agaatctcaattccatcttcttcaattgaacacagttttaattgttgttttc 138  Q
    ||||||||||||||||| ||  || |||||||||| ||||||||| | ||||| | ||| ||||||||||||||||||||||||||||| ||||  ||||    
T  2357639 aagtcttttactcatatatccctt-tctctcaaaatcatagaaaccctagaattttaatcccatcttcttcaattgaacacagttttaagtgttagtttc 2357541  T
Q  139 attctaatttcatacatttttccatca 165  Q
    |||| | ||||||||||| ||||||||    
T  2357540 attcaattttcatacattgttccatca 2357514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 98; Significance: 2e-48; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 40 - 165
Target Start/End: Original strand, 13273448 - 13273573
Alignment:
Q  40 aagtcttttactcatatctcttttctctctcaaaaccatagaaacgcagaatctcaattccatcttcttcaattgaacacagttttaattgttgttttca 139  Q
    |||||||||||||||||||||||||||||||||||| |||||||  ||||||||||||| |||||||||||||||||||||||||||| ||||| |||||    
T  13273448 aagtcttttactcatatctcttttctctctcaaaactatagaaatccagaatctcaatttcatcttcttcaattgaacacagttttaaatgttggtttca 13273547  T
Q  140 ttctaatttcatacatttttccatca 165  Q
    ||||||||||||||||| ||||||||    
T  13273548 ttctaatttcatacattgttccatca 13273573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 40 - 170
Target Start/End: Complemental strand, 45497021 - 45496891
Alignment:
Q  40 aagtcttttactcatatctcttttctctctcaaaaccatagaaacgcagaatctcaattccatcttcttcaattgaacacagttttaattgttgttttca 139  Q
    ||||||||||||||||| | | ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||| |||||||||||    
T  45497021 aagtcttttactcatatttatgttctctctcaaaaccatagaaacccagaatctcaactccatcttcttcaattgaactcagttttaagtgttgttttca 45496922  T
Q  140 ttctaatttcatacatttttccatcacattg 170  Q
    ||||||||||||||||| |||||||| ||||    
T  45496921 ttctaatttcatacattgttccatcaaattg 45496891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 40 - 170
Target Start/End: Complemental strand, 45504763 - 45504633
Alignment:
Q  40 aagtcttttactcatatctcttttctctctcaaaaccatagaaacgcagaatctcaattccatcttcttcaattgaacacagttttaattgttgttttca 139  Q
    ||||||||||||||||| | | ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||| |||||||||||    
T  45504763 aagtcttttactcatatttatgttctctctcaaaaccatagaaacccagaatctcaactccatcttcttcaattgaactcagttttaagtgttgttttca 45504664  T
Q  140 ttctaatttcatacatttttccatcacattg 170  Q
    ||||||||||||||||| |||||||| ||||    
T  45504663 ttctaatttcatacattgttccatcaaattg 45504633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 40 - 170
Target Start/End: Complemental strand, 21794458 - 21794328
Alignment:
Q  40 aagtcttttactcatatctcttttctctctcaaaaccatagaaacgcagaatctcaattccatcttcttcaattgaacacagttttaattgttgttttca 139  Q
    |||||||||||||||||||||||| |||||||||| ||||||||| || ||||||||||||||||||||||||||||||||||||||| || |  |||||    
T  21794458 aagtcttttactcatatctcttttttctctcaaaatcatagaaacccataatctcaattccatcttcttcaattgaacacagttttaagtgctagtttca 21794359  T
Q  140 ttctaatttcatacatttttccatcacattg 170  Q
    ||||||||||||||||| |||||||| ||||    
T  21794358 ttctaatttcatacattgttccatcaaattg 21794328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 40 - 165
Target Start/End: Complemental strand, 43081602 - 43081477
Alignment:
Q  40 aagtcttttactcatatctcttttctctctcaaaaccatagaaacgcagaatctcaattccatcttcttcaattgaacacagttttaattgttgttttca 139  Q
    ||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| || || |||||    
T  43081602 aagtcttttactcatatctctgttctctctcaaaaccatagaaacccagaatctcaattccatcttcttcaattgaactcagttttaagtgctggtttca 43081503  T
Q  140 ttctaatttcatacatttttccatca 165  Q
    || |||||||||||||| ||| ||||    
T  43081502 ttttaatttcatacattgttcgatca 43081477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 40 - 164
Target Start/End: Original strand, 1645171 - 1645297
Alignment:
Q  40 aagtcttttactcatatctct-tttctctctcaaaaccatagaaacgc-agaatctcaattccatcttcttcaattgaacacagttttaattgttgtttt 137  Q
    ||||||||||||||||||||| |||||||||||||||||||||||| | | ||||||||||||||||||||| ||||||||||||||||| ||||| |||    
T  1645171 aagtcttttactcatatctctctttctctctcaaaaccatagaaaccctataatctcaattccatcttcttctattgaacacagttttaagtgttggttt 1645270  T
Q  138 cattctaatttcatacatttttccatc 164  Q
    ||||| | ||||||||||| |||||||    
T  1645271 cattcaattttcatacattgttccatc 1645297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 47 - 165
Target Start/End: Complemental strand, 45485749 - 45485631
Alignment:
Q  47 ttactcatatctcttttctctctcaaaaccatagaaacgcagaatctcaattccatcttcttcaattgaacacagttttaattgttgttttcattctaat 146  Q
    |||||||||||||| ||||||||||||| ||||||||  ||||||||||| |||||||||||||||||||| ||||||||| || || ||||||||||||    
T  45485749 ttactcatatctctgttctctctcaaaatcatagaaatccagaatctcaactccatcttcttcaattgaactcagttttaagtgctggtttcattctaat 45485650  T
Q  147 ttcatacatttttccatca 165  Q
    |||||||||| ||||||||    
T  45485649 ttcatacattgttccatca 45485631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 40 - 165
Target Start/End: Original strand, 5989550 - 5989677
Alignment:
Q  40 aagtcttttactcatatctct-tttctctctcaaaaccatagaaacgc-agaatctcaattccatcttcttcaattgaacacagttttaattgttgtttt 137  Q
    ||||||||||  ||||||||| |||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| ||||| |||    
T  5989550 aagtcttttatacatatctctctttctctctcaaaaccatagaaaccctagaatctcaattccatcttcttcaattgaacacagttttaagtgttggttt 5989649  T
Q  138 cattctaatttcatacatttttccatca 165  Q
    | ||| | ||||||||||| ||||||||    
T  5989650 ccttcaattttcatacattgttccatca 5989677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 40 - 116
Target Start/End: Original strand, 18164097 - 18164173
Alignment:
Q  40 aagtcttttactcatatctcttttctctctcaaaaccatagaaacgcagaatctcaattccatcttcttcaattgaa 116  Q
    ||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  18164097 aagtcttttactcatatctctgttctctctcaaaaccatagaaacccagaatctcaattccatcttcttcaattgaa 18164173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 40 - 165
Target Start/End: Original strand, 4285198 - 4285323
Alignment:
Q  40 aagtcttttactcatatctcttttctctctcaaaaccatagaaacgcag-aatctcaattccatcttcttcaattgaacacagttttaattgttgttttc 138  Q
    |||||||||| ||||| |||| || ||| |||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||| ||||| ||||    
T  4285198 aagtcttttattcatacctctctt-tctatcaaaaccatagaaaccctggaatctcaattccatcttcttcaattgaacacagttttaaatgttggtttc 4285296  T
Q  139 attctaatttcatacatttttccatca 165  Q
    |||| | ||||||||||| ||||||||    
T  4285297 attcaattttcatacattgttccatca 4285323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 40 - 170
Target Start/End: Original strand, 5983593 - 5983725
Alignment:
Q  40 aagtcttttactcatatctct-tttctctctcaaaaccatagaaacgc-agaatctcaattccatcttcttcaattgaacacagttttaattgttgtttt 137  Q
    |||||||||| |||||||||  ||||||||||||||| |||||||| | | |||||||||||||||||||||||||||||||| |||||| ||||| |||    
T  5983593 aagtcttttattcatatctcgctttctctctcaaaactatagaaaccctataatctcaattccatcttcttcaattgaacacaattttaagtgttggttt 5983692  T
Q  138 cattctaatttcatacatttttccatcacattg 170  Q
    ||||| | |||||||||||  ||||||| ||||    
T  5983693 cattcaattttcatacattgctccatcaaattg 5983725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 100 - 142
Target Start/End: Complemental strand, 31468972 - 31468930
Alignment:
Q  100 catcttcttcaattgaacacagttttaattgttgttttcattc 142  Q
    |||||||||||||||||||||||||||| ||||| ||||||||    
T  31468972 catcttcttcaattgaacacagttttaagtgttggtttcattc 31468930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 95; Significance: 2e-46; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 40 - 170
Target Start/End: Original strand, 11096290 - 11096420
Alignment:
Q  40 aagtcttttactcatatctcttttctctctcaaaaccatagaaacgcagaatctcaattccatcttcttcaattgaacacagttttaattgttgttttca 139  Q
    ||||||||||||||||||| |||| |||||||||||||||||||| ||  |||||||||||||||||||||||||||||||||||||| ||||| |||||    
T  11096290 aagtcttttactcatatctattttttctctcaaaaccatagaaacccatcatctcaattccatcttcttcaattgaacacagttttaagtgttggtttca 11096389  T
Q  140 ttctaatttcatacatttttccatcacattg 170  Q
    ||||||||||||||||| |||||||| ||||    
T  11096390 ttctaatttcatacattgttccatcaaattg 11096420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 40 - 170
Target Start/End: Original strand, 14685463 - 14685591
Alignment:
Q  40 aagtcttttactcatatctcttttctctctcaaaaccatagaaacgc-agaatctcaattccatcttcttcaattgaacacagttttaattgttgttttc 138  Q
    ||||||||||||||| |||||||   |||| |||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| ||||| ||||    
T  14685463 aagtcttttactcatctctcttt---ctcttaaaaccatagaaaccctagaatctcaattccatcttcttcaattgaacacagttttaagtgttggtttc 14685559  T
Q  139 attctaatttcatacatttttccatcacattg 170  Q
    |||| | ||||||||||| || ||||| ||||    
T  14685560 attcaattttcatacattgtttcatcaaattg 14685591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 85; Significance: 1e-40; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 40 - 156
Target Start/End: Complemental strand, 28571465 - 28571349
Alignment:
Q  40 aagtcttttactcatatctcttttctctctcaaaaccatagaaacgcagaatctcaattccatcttcttcaattgaacacagttttaattgttgttttca 139  Q
    |||||||||||| |||||||||||||||||||||| ||||||||  || |||||||||||||||||||||||||||||| |||||||| ||||| |||||    
T  28571465 aagtcttttacttatatctcttttctctctcaaaatcatagaaattcaaaatctcaattccatcttcttcaattgaacatagttttaagtgttggtttca 28571366  T
Q  140 ttctaatttcatacatt 156  Q
    |||||||||||||||||    
T  28571365 ttctaatttcatacatt 28571349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 40 - 165
Target Start/End: Original strand, 53011323 - 53011450
Alignment:
Q  40 aagtcttttactcatatctct-tttctctctcaaaaccatagaaacgc-agaatctcaattccatcttcttcaattgaacacagttttaattgttgtttt 137  Q
    |||||||||| |||||||||| |||||||||||||||||||||||| | |||||||| ||| |||||||||||||||||||||||||||| ||||| |||    
T  53011323 aagtcttttattcatatctctctttctctctcaaaaccatagaaaccctagaatctctatttcatcttcttcaattgaacacagttttaagtgttggttt 53011422  T
Q  138 cattctaatttcatacatttttccatca 165  Q
    ||||||||||||||||||| ||||||||    
T  53011423 cattctaatttcatacattgttccatca 53011450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 40 - 170
Target Start/End: Original strand, 53008429 - 53008561
Alignment:
Q  40 aagtcttttactcatatctct-tttctctctcaaaaccatagaaacgc-agaatctcaattccatcttcttcaattgaacacagttttaattgttgtttt 137  Q
    |||||||||| |||||||||| |||||||||||||||||||||||| | | |||||  ||||||||||||||||| ||||||| |||||| ||||| |||    
T  53008429 aagtcttttattcatatctctctttctctctcaaaaccatagaaaccctaaaatctttattccatcttcttcaatggaacacaattttaagtgttggttt 53008528  T
Q  138 cattctaatttcatacatttttccatcacattg 170  Q
    |||||||||||||| |||| |||||||| ||||    
T  53008529 cattctaatttcatgcattgttccatcaaattg 53008561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 77; Significance: 8e-36; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 40 - 142
Target Start/End: Complemental strand, 35323991 - 35323887
Alignment:
Q  40 aagtcttttactcatatctct-tttctctctcaaaaccatagaaacgc-agaatctcaattccatcttcttcaattgaacacagttttaattgttgtttt 137  Q
    ||||||||||||||||||||| |||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| ||||| |||    
T  35323991 aagtcttttactcatatctctctttctctctcaaaaccatagaaaccctagaatctcaattccatcttcttcaattgaacacagttttaagtgttggttt 35323892  T
Q  138 cattc 142  Q
    |||||    
T  35323891 cattc 35323887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 44 - 165
Target Start/End: Complemental strand, 22582302 - 22582180
Alignment:
Q  44 cttttactcatatctcttttctctctcaaaaccatagaaacgc-agaatctcaattccatcttcttcaattgaacacagttttaattgttgttttcattc 142  Q
    ||||||||||||||| || |||||||||||||||||||||| | |||||||||||| |||||||||||||||||| || |||||| || || ||||||||    
T  22582302 cttttactcatatcttttctctctctcaaaaccatagaaaccctagaatctcaatttcatcttcttcaattgaactcaattttaaatgctggtttcattc 22582203  T
Q  143 taatttcatacatttttccatca 165  Q
    |||||||||||||| ||||||||    
T  22582202 taatttcatacattgttccatca 22582180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 78 - 165
Target Start/End: Original strand, 35703408 - 35703495
Alignment:
Q  78 tagaaacgcagaatctcaattccatcttcttcaattgaacacagttttaattgttgttttcattctaatttcatacatttttccatca 165  Q
    ||||||| |||||||||||||| ||||||||||||||||| ||||||||| || || |||||||||||||||||||||| ||||||||    
T  35703408 tagaaacccagaatctcaattctatcttcttcaattgaactcagttttaagtgctggtttcattctaatttcatacattgttccatca 35703495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 74; Significance: 5e-34; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 41 - 156
Target Start/End: Original strand, 10917045 - 10917162
Alignment:
Q  41 agtcttttactcatatctct-tttctctctcaaaaccatagaaacgc-agaatctcaattccatcttcttcaattgaacacagttttaattgttgttttc 138  Q
    |||||||||||||||||||| ||||||||||||||| |||||||| | |||||||||||||||||||||||||||||||||| |||||| ||||| ||||    
T  10917045 agtcttttactcatatctctctttctctctcaaaactatagaaaccctagaatctcaattccatcttcttcaattgaacacaattttaagtgttggtttc 10917144  T
Q  139 attctaatttcatacatt 156  Q
    |||| | |||||||||||    
T  10917145 attcaattttcatacatt 10917162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 165
Target Start/End: Complemental strand, 3709561 - 3709511
Alignment:
Q  115 aacacagttttaattgttgttttcattctaatttcatacatttttccatca 165  Q
    ||||||||||||| ||||| |||||||| | ||||||||||| ||||||||    
T  3709561 aacacagttttaaatgttggtttcattcaattttcatacattgttccatca 3709511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 100 - 142
Target Start/End: Original strand, 34602 - 34644
Alignment:
Q  100 catcttcttcaattgaacacagttttaattgttgttttcattc 142  Q
    |||||||||||||||||||||||||||| ||||| ||||||||    
T  34602 catcttcttcaattgaacacagttttaagtgttggtttcattc 34644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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