View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10582_low_17 (Length: 251)
Name: NF10582_low_17
Description: NF10582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10582_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 213; Significance: 1e-117; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 17 - 241
Target Start/End: Complemental strand, 6241116 - 6240892
Alignment:
| Q |
17 |
actaaattcatcactcattgcattgtttttgtgaataccgagcgcaaagtggactggctcatggacaaaatgcgaagcagatattatacagtgtcgacca |
116 |
Q |
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| T |
6241116 |
actaaattcatcactcattgcattgtttttgtgaataccgagcgcaaagtggactggctcatggacaaaatgcgaagcagatattatacagtgttgacca |
6241017 |
T |
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| Q |
117 |
ttcatgatgacatggaccagaacactagggatatcatcgtacgcgatttccagtctggttctcctcagattctcattaccaccgaccccttggtctacgg |
216 |
Q |
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| T |
6241016 |
ttcatgatgacatggaccagaacactagggatatcatcgtacgtaatttccagtctggttctcctcagattctcattaccaccgaccccttggtctacgg |
6240917 |
T |
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| Q |
217 |
tttagatgtgcaggaagtgtctctg |
241 |
Q |
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| T |
6240916 |
tttagatgtgcaggaagtgtctctg |
6240892 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 42 - 209
Target Start/End: Complemental strand, 6249495 - 6249328
Alignment:
| Q |
42 |
tttttgtgaataccgagcgcaaagtggactggctcatggacaaaatgcgaagcagatattatacagtgtcgaccattcatgatgacatggaccagaacac |
141 |
Q |
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| T |
6249495 |
tttttgtgaataccaggcggaaagtggactggcttacggataagatgcgaagcagagatcatacagtctcagccactcatggtgacatggaccagaacac |
6249396 |
T |
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| Q |
142 |
tagggatatcatcgtacgcgatttccagtctggttctcctcagattctcattaccaccgaccccttgg |
209 |
Q |
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| T |
6249395 |
tagggatatcatcatgcgtgagtttcggtctggctcttctcgagttctcataaccaccgacctcttgg |
6249328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 110
Target Start/End: Complemental strand, 6226765 - 6226673
Alignment:
| Q |
18 |
ctaaattcatcactcattgcattgtttttgtgaataccgagcgcaaagtggactggctcatggacaaaatgcgaagcagatattatacagtgt |
110 |
Q |
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| T |
6226765 |
ctaaatccatcactcattgtatcgtctttgtgaataccatggacaaagtggactggctcatggacgagttgcgaagcagagatcataaagtgt |
6226673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 205
Target Start/End: Complemental strand, 6234016 - 6233830
Alignment:
| Q |
19 |
taaattcatcactcattgcattgtttttgtgaataccgagcg-caaagtggactggctcatggacaaaatgcgaagcagatattatacagtgtcgaccat |
117 |
Q |
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| T |
6234016 |
taaatccatcactcattgtatcgtctttgtgaatact-atcgacaaagtggactggctcacggacaagatgcgaagcagagatcattatgt------cat |
6233924 |
T |
|
| Q |
118 |
tcatgatgacatggaccagaacactagggatatcatcgtacgcga------tttccagtctggttctcctcagattctcattaccaccgacccc |
205 |
Q |
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| T |
6233923 |
tcatggtgacagggaccagaacactatggataccattgaacgtgagtttcttttcgagtctggctctcctcaagttctcattaccaccgacccc |
6233830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 26 - 210
Target Start/End: Original strand, 17545359 - 17545549
Alignment:
| Q |
26 |
atcactcattgcattgtttttgtgaataccgagcgcaaagtggactggctcatggacaaaatgcgaagcagatattatacagtgtcgaccattcatgatg |
125 |
Q |
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||||||||||| ||||| |||||| ||||| | |||||||||| ||||||| |||||| |||| ||||||| || ||| |||||| ||| || || |
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| T |
17545359 |
atcactcattgtattgtctttgtggataccaggtgcaaagtggattggctcacggacaagatgcaaagcagagatcataaagtgtcagtcatccagagtg |
17545458 |
T |
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| Q |
126 |
acatggaccagaacactagggatatcatcgtacgcga------tttccagtctggttctcctcagattctcattaccaccgaccccttggt |
210 |
Q |
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| T |
17545459 |
acatggaccagaacactagggatatcattgtgcgcgagttcttttcccagtctggctctcctcatgttctcattaccacagaccccttggt |
17545549 |
T |
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