View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10582_low_18 (Length: 245)
Name: NF10582_low_18
Description: NF10582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10582_low_18 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 4 - 245
Target Start/End: Original strand, 34946281 - 34946522
Alignment:
| Q |
4 |
gagatgaaattagatagaaacctgcccataagcaaaaacagaactattgaacccagccaaacaattctctactagaggcacaccaataagctcaaaaata |
103 |
Q |
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| T |
34946281 |
gagatgaaattagaaagaaacctgcccataagcaaaaacagaactattgaacccagccaaacaattctctactagaggcacaccaataagctcaaaaata |
34946380 |
T |
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| Q |
104 |
tcaagctgaaaaacaaaaacagtattaaacaagtaaacaactaataaatcaattaattgcaataatatcacaagataaaaacaatttagattagaaaaca |
203 |
Q |
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| T |
34946381 |
tcaagctgaaaaacaaaaacagaattaaacaagtaaacaactaataaatcaattaattgcaataatatcacaagataaaaacaatttagattagaaatca |
34946480 |
T |
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| Q |
204 |
tacctgagtagcatcaatgtgagcaatggaatcaaaggtgaa |
245 |
Q |
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| T |
34946481 |
tacctgagtagcatcaatgtgagcaatggaatcaaaggtgaa |
34946522 |
T |
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Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 21 - 118
Target Start/End: Complemental strand, 38289812 - 38289715
Alignment:
| Q |
21 |
aaacctgcccataagcaaaaacagaactattgaacccagccaaacaattctctactagaggcacaccaataagctcaaaaatatcaagctgaaaaaca |
118 |
Q |
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| T |
38289812 |
aaacctgtccatatgcaaatactgaactattgaaaccagccaaacaattctcgaccaaaggaaccccgacatgctcaaaaatatcaagctgaaaaaca |
38289715 |
T |
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