View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10582_low_24 (Length: 220)

Name: NF10582_low_24
Description: NF10582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10582_low_24
NF10582_low_24
[»] chr4 (6 HSPs)
chr4 (1-201)||(2623766-2623966)
chr4 (8-131)||(55782839-55782962)
chr4 (8-131)||(55847019-55847142)
chr4 (27-139)||(2591558-2591670)
chr4 (1-101)||(37424780-37424880)
chr4 (1-88)||(43445019-43445105)
[»] chr8 (2 HSPs)
chr8 (1-139)||(44889112-44889250)
chr8 (27-125)||(5869907-5870005)
[»] chr3 (7 HSPs)
chr3 (1-133)||(13622606-13622738)
chr3 (1-124)||(4616020-4616143)
chr3 (10-128)||(21540548-21540666)
chr3 (58-128)||(47114408-47114478)
chr3 (4-101)||(39749091-39749188)
chr3 (5-54)||(47114808-47114857)
chr3 (45-93)||(48957870-48957918)
[»] chr7 (3 HSPs)
chr7 (8-124)||(12214141-12214256)
chr7 (1-136)||(11621725-11621852)
chr7 (45-97)||(22025697-22025749)
[»] chr5 (2 HSPs)
chr5 (1-139)||(15583099-15583241)
chr5 (95-133)||(6008571-6008609)
[»] chr2 (2 HSPs)
chr2 (8-84)||(6945253-6945329)
chr2 (90-139)||(6945753-6945802)


Alignment Details
Target: chr4 (Bit Score: 165; Significance: 2e-88; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 2623766 - 2623966
Alignment:
Q  1 aagtcatgtgtaaattttatttctaagaataaaatgtacgtaggcataatttatgaaaacttgaaacaaacatggaaaccaaggattttcaatgtcacat 100  Q
    ||||||||||||||||||||| ||  |||||||| ||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||    
T  2623766 aagtcatgtgtaaattttattcctgggaataaaacgtacgtaggcataatttatgaaaacttgaaataaacatgggaaccaaggattttcaatgtcacat 2623865  T
Q  101 ttctgggaataaatttgcaatccatgaaacaaacacccctttaaaatatgaaagcctagtacgtaaacagtgagattacttagtcttctcgagggtgaac 200  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||    
T  2623866 ttctgggaataaatttgcaatccatcaaacaaacacccctttaaaatatgaaagcctagaaagtaaacagtgagattacttagtcttctcgagggtgaac 2623965  T
Q  201 a 201  Q
    |    
T  2623966 a 2623966  T

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Target: chr4; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 8 - 131
Target Start/End: Complemental strand, 55782962 - 55782839
Alignment:
Q  8 gtgtaaattttatttctaagaataaaatgtacgtaggcataatttatgaaaacttgaaacaaacatggaaaccaaggattttcaatgtcacatttctggg 107  Q
    |||||||||||||| |||  |||||||||||| | || ||||||||||||||||||||||| |||||| |||||| ||||  |||| ||||||| | |      
T  55782962 gtgtaaattttattcctataaataaaatgtacttgggaataatttatgaaaacttgaaacagacatgggaaccaaagattcccaatatcacattccggaa 55782863  T
Q  108 aataaatttgcaatccatgaaaca 131  Q
    |||||||||||||| |||||||||    
T  55782862 aataaatttgcaatacatgaaaca 55782839  T

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Target: chr4; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 8 - 131
Target Start/End: Complemental strand, 55847142 - 55847019
Alignment:
Q  8 gtgtaaattttatttctaagaataaaatgtacgtaggcataatttatgaaaacttgaaacaaacatggaaaccaaggattttcaatgtcacatttctggg 107  Q
    |||||||||||||| |||  |||||||||||| | || ||||||||||||||||||||||| |||||| |||||| ||||  |||| ||||||| | |      
T  55847142 gtgtaaattttattcctataaataaaatgtacttgggaataatttatgaaaacttgaaacagacatgggaaccaaagattcccaatatcacattccggaa 55847043  T
Q  108 aataaatttgcaatccatgaaaca 131  Q
    |||||||||||||| |||||||||    
T  55847042 aataaatttgcaatacatgaaaca 55847019  T

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Target: chr4; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 27 - 139
Target Start/End: Original strand, 2591558 - 2591670
Alignment:
Q  27 gaataaaatgtacgtaggcataatttatgaaaacttgaaacaaacatggaaaccaaggattttcaatgtcacatttctgggaataaatttgcaatccatg 126  Q
    |||||||| |||| ||||||||||||||||||| ||||||||||||||| || ||||||||| |||| |||||||  ||| |  ||||||| |||||| |    
T  2591558 gaataaaaagtacctaggcataatttatgaaaatttgaaacaaacatgggaatcaaggatttccaatttcacattcatggtaggaaatttgtaatccagg 2591657  T
Q  127 aaacaaacacccc 139  Q
    |||| ||||||||    
T  2591658 aaacgaacacccc 2591670  T

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Target: chr4; HSP #5
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 37424880 - 37424780
Alignment:
Q  1 aagtcatgtgtaaattttatttctaagaataaaatgtacgtaggcataatttatgaaaacttgaaacaaacatggaaaccaaggattttcaatgtcacat 100  Q
    ||||||||||| ||||||||| ||| ||||||||||||| | || |||||||||||||| || ||||||| |||| |||||||||||  |||| ||||||    
T  37424880 aagtcatgtgtgaattttattcctaggaataaaatgtacctcggaataatttatgaaaatttaaaacaaatatgggaaccaaggattcccaatatcacat 37424781  T
Q  101 t 101  Q
    |    
T  37424780 t 37424780  T

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Target: chr4; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 43445105 - 43445019
Alignment:
Q  1 aagtcatgtgtaaattttatttctaagaataaaatgtacgtaggcataatttatgaaaacttgaaacaaacatggaaaccaaggattt 88  Q
    |||| |||||||||||| ||||||||||||||||  ||| ||| || ||||||||||| |||||||||||||| |||||||| |||||    
T  43445105 aagtaatgtgtaaatttaatttctaagaataaaaattacctagacaaaatttatgaaagcttgaaacaaacat-gaaaccaatgattt 43445019  T

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Target: chr8 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 44889112 - 44889250
Alignment:
Q  1 aagtcatgtgtaaattttatttctaagaataaaatgtacgtaggcataatttatgaaaacttgaaacaaacatggaaaccaaggattttcaatgtcacat 100  Q
    |||||||||||||| |||||| ||||||||||||||||| |||| ||||||||||||||||| |||||||||||||||||||| |||| |||||||||||    
T  44889112 aagtcatgtgtaaaatttattcctaagaataaaatgtacctaggtataatttatgaaaacttaaaacaaacatggaaaccaagaatttccaatgtcacat 44889211  T
Q  101 ttctgggaataaatttgcaatccatgaaacaaacacccc 139  Q
      ||   ||||||| | ||||||||||||||||||||||    
T  44889212 ccctaaaaataaatctacaatccatgaaacaaacacccc 44889250  T

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Target: chr8; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 27 - 125
Target Start/End: Original strand, 5869907 - 5870005
Alignment:
Q  27 gaataaaatgtacgtaggcataatttatgaaaacttgaaacaaacatggaaaccaaggattttcaatgtcacatttctgggaataaatttgcaatccat 125  Q
    ||||||||||||| || |||||||||||| ||||||||||||||||||| ||| |||||||  |||||||||||| |||  ||||||||||||||||||    
T  5869907 gaataaaatgtacctaagcataatttatggaaacttgaaacaaacatgggaacgaaggattcgcaatgtcacattcctgaaaataaatttgcaatccat 5870005  T

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Target: chr3 (Bit Score: 81; Significance: 3e-38; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 13622738 - 13622606
Alignment:
Q  1 aagtcatgtgtaaattttatttctaagaataaaatgtacgtaggcataatttatgaaaacttgaaacaaacatggaaaccaaggattttcaatgtcacat 100  Q
    ||||||||||||||||||||| ||| |||| |||| | | |||||||||||||||| |||||||||||||||||| |||||||||||  |||||||||||    
T  13622738 aagtcatgtgtaaattttattcctaggaattaaatatgcctaggcataatttatgataacttgaaacaaacatgggaaccaaggattcccaatgtcacat 13622639  T
Q  101 ttctgggaataaatttgcaatccatgaaacaaa 133  Q
    |  | ||||||||||||||||||||||||||||    
T  13622638 tcatcggaataaatttgcaatccatgaaacaaa 13622606  T

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Target: chr3; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 4616020 - 4616143
Alignment:
Q  1 aagtcatgtgtaaattttatttctaagaataaaatgtacgtaggcataatttatgaaaacttgaaacaaacatggaaaccaaggattttcaatgtcacat 100  Q
    |||| |||||||||||||||| ||||| |||||| |||| ||||| ||||||||||||| ||||||||||||||| ||||||  |||  |||||||||||    
T  4616020 aagtaatgtgtaaattttattcctaagtataaaaagtacctaggcgtaatttatgaaaatttgaaacaaacatgggaaccaaaaattcccaatgtcacat 4616119  T
Q  101 ttctgggaataaatttgcaatcca 124  Q
    | |||  |||||||||||||||||    
T  4616120 tcctgataataaatttgcaatcca 4616143  T

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Target: chr3; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 10 - 128
Target Start/End: Complemental strand, 21540666 - 21540548
Alignment:
Q  10 gtaaattttatttctaagaataaaatgtacgtaggcataatttatgaaaacttgaaacaaacatggaaaccaaggattttcaatgtcacatttctgggaa 109  Q
    |||| |||||||||||| | ||||| |||| |||||||||||||||||||| |||||||||||||  || ||| |||||||||||| |||||| ||  ||    
T  21540666 gtaagttttatttctaaaattaaaaagtacctaggcataatttatgaaaacatgaaacaaacatgagaatcaatgattttcaatgttacatttttgaaaa 21540567  T
Q  110 taaatttgcaatccatgaa 128  Q
    |||||||||||||||||||    
T  21540566 taaatttgcaatccatgaa 21540548  T

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Target: chr3; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 58 - 128
Target Start/End: Complemental strand, 47114478 - 47114408
Alignment:
Q  58 aacttgaaacaaacatggaaaccaaggattttcaatgtcacatttctgggaataaatttgcaatccatgaa 128  Q
    ||||||||||||||||||||||||||||||  ||||||||||||   ||||||||||||||||||||||||    
T  47114478 aacttgaaacaaacatggaaaccaaggattcccaatgtcacattcgcgggaataaatttgcaatccatgaa 47114408  T

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Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 4 - 101
Target Start/End: Original strand, 39749091 - 39749188
Alignment:
Q  4 tcatgtgtaaattttatttctaagaataaaatgtacgtaggcataatttatgaaaacttgaaacaaacatggaaaccaaggattttcaatgtcacatt 101  Q
    ||||||||||||||||||  |||||||||||| ||| |||  |||| |||||||||||||||||||| |||| || ||  ||||  ||||||||||||    
T  39749091 tcatgtgtaaattttattcttaagaataaaatatacatagatataacttatgaaaacttgaaacaaatatgggaatcattgattcccaatgtcacatt 39749188  T

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Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 54
Target Start/End: Complemental strand, 47114857 - 47114808
Alignment:
Q  5 catgtgtaaattttatttctaagaataaaatgtacgtaggcataatttat 54  Q
    ||||||||||||||||| ||| ||||||||| ||| ||||||||||||||    
T  47114857 catgtgtaaattttattcctatgaataaaatatacctaggcataatttat 47114808  T

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Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 93
Target Start/End: Original strand, 48957870 - 48957918
Alignment:
Q  45 cataatttatgaaaacttgaaacaaacatggaaaccaaggattttcaat 93  Q
    |||||||||||||||||| ||||||||||| ||| ||||||||| ||||    
T  48957870 cataatttatgaaaacttaaaacaaacatgaaaatcaaggatttccaat 48957918  T

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Target: chr7 (Bit Score: 73; Significance: 2e-33; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 8 - 124
Target Start/End: Complemental strand, 12214256 - 12214141
Alignment:
Q  8 gtgtaaattttatttctaagaataaaatgtacgtaggcataatttatgaaaacttgaaacaaacatggaaaccaaggattttcaatgtcacatttctggg 107  Q
    |||||||||||||| ||| ||||||||||||| |||||||| |||||||||||||||||||||||||| |||||||||||  ||||| |||||| ||||     
T  12214256 gtgtaaattttattcctaggaataaaatgtacctaggcata-tttatgaaaacttgaaacaaacatgggaaccaaggattcccaatgccacattcctgga 12214158  T
Q  108 aataaatttgcaatcca 124  Q
    |||||||||||||||||    
T  12214157 aataaatttgcaatcca 12214141  T

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Target: chr7; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 11621725 - 11621852
Alignment:
Q  1 aagtcatgtgtaaattttatttctaagaataaaatgtacgtaggcataatttatgaaaacttgaaacaaacatggaaaccaaggattttcaatgtcacat 100  Q
    ||||||||||||||||||||| ||| ||||||||| ||| | ||||||||||||||||||||||||||||||| | ||||||| ||| ||||||||||      
T  11621725 aagtcatgtgtaaattttattcctaggaataaaatatacatgggcataatttatgaaaacttgaaacaaacataggaaccaagtattctcaatgtcac-- 11621822  T
Q  101 ttctgggaataaatttgcaatccatgaaacaaacac 136  Q
          ||||||||||||||||||||||||||||||    
T  11621823 ------gaataaatttgcaatccatgaaacaaacac 11621852  T

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Target: chr7; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 45 - 97
Target Start/End: Original strand, 22025697 - 22025749
Alignment:
Q  45 cataatttatgaaaacttgaaacaaacatggaaaccaaggattttcaatgtca 97  Q
    ||||||||||||||||||||||||||||||| |||||||||||| ||||||||    
T  22025697 cataatttatgaaaacttgaaacaaacatgggaaccaaggatttccaatgtca 22025749  T

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Target: chr5 (Bit Score: 64; Significance: 4e-28; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 139
Target Start/End: Complemental strand, 15583241 - 15583099
Alignment:
Q  1 aagtcatgtgtaaattttatttctaagaataaaatgtacgt-----aggcataatttatgaaaacttgaaacaaacatggaaaccaaggattttcaatgt 95  Q
    |||||||||||||||| |||| ||| |||||||| |||| |     ||||||||||||||||||||| |||||||||||| |||| |||||||  |||||    
T  15583241 aagtcatgtgtaaattatattcctaggaataaaa-gtacctcccctaggcataatttatgaaaacttaaaacaaacatgggaacctaggatttcaaatgt 15583143  T
Q  96 cacatttctgggaataaatttgcaatccatgaaacaaacacccc 139  Q
    || ||| ||||| ||||||||||||||||||||||| |||||||    
T  15583142 catattcctgggtataaatttgcaatccatgaaacagacacccc 15583099  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 133
Target Start/End: Complemental strand, 6008609 - 6008571
Alignment:
Q  95 tcacatttctgggaataaatttgcaatccatgaaacaaa 133  Q
    ||||||||||| |||||||||| ||||||||||||||||    
T  6008609 tcacatttctgagaataaatttacaatccatgaaacaaa 6008571  T

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Target: chr2 (Bit Score: 53; Significance: 1e-21; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 8 - 84
Target Start/End: Original strand, 6945253 - 6945329
Alignment:
Q  8 gtgtaaattttatttctaagaataaaatgtacgtaggcataatttatgaaaacttgaaacaaacatggaaaccaagg 84  Q
    |||||||||||||| ||| ||||||||| ||| |||||||||||||||||| |||||||||||||||| ||||||||    
T  6945253 gtgtaaattttattcctaggaataaaatatacctaggcataatttatgaaatcttgaaacaaacatgggaaccaagg 6945329  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 90 - 139
Target Start/End: Original strand, 6945753 - 6945802
Alignment:
Q  90 caatgtcacatttctgggaataaatttgcaatccatgaaacaaacacccc 139  Q
    |||||| |||||| ||  ||||||||||||||| ||||||||||||||||    
T  6945753 caatgttacatttatgaaaataaatttgcaatctatgaaacaaacacccc 6945802  T

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