View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10582_low_4 (Length: 377)
Name: NF10582_low_4
Description: NF10582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10582_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 13 - 370
Target Start/End: Complemental strand, 34626703 - 34626347
Alignment:
| Q |
13 |
taatctaccatggataggtgttacatggctaatgttgttgatgatgatcgaatatgtgacaggtttaatgaagaaatgatggaatctctttttggatata |
112 |
Q |
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| T |
34626703 |
taatctaccatggataggtgttacatggctaatgttgttgatgatgatcgaatatgtgacaggtttaatgaagaaatgatggaatctctttttggatata |
34626604 |
T |
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| Q |
113 |
ctcaacagaatgataaactcaaaggtggacataagaaagagtcttccttacgtgatacacctcagtatatccaaatcattgactcaaagaaagcacaaaa |
212 |
Q |
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| T |
34626603 |
ctcaacagaatgataaactcaaaggtggacataggaaagagtcttccttacgtgatacacctcagtatatccaaatcattgactcaaagaaagcacaaaa |
34626504 |
T |
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| Q |
213 |
tttatcaattctcttgcgagcattaaatgtgacactagaagaagttcgtgatgcactacttgaaggnnnnnnnnctgttccttcaattttcttctataaa |
312 |
Q |
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| T |
34626503 |
tttatcaattctcttgcgagcattaaatgtgacactagaagaagttcgtgatgcactacttgaagg-tttttttctgttccttcaattttcttctataaa |
34626405 |
T |
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| Q |
313 |
tgcatatagctacaaggagaaaataataatgataataatagcatcatcagattctctg |
370 |
Q |
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| T |
34626404 |
tgcatatagctacaaggagaaaataataatgataataatagcatcatcagattctctg |
34626347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 170 - 269
Target Start/End: Original strand, 31564624 - 31564723
Alignment:
| Q |
170 |
cacctcagtatatccaaatcattgactcaaagaaagcacaaaatttatcaattctcttgcgagcattaaatgtgacactagaagaagttcgtgatgcact |
269 |
Q |
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| T |
31564624 |
cacctcaatatatccagatcgtcgacaaaaagaaagcacaaaatttattaattctgttgcgcgcattgaacgtgacgatggaagaagtttgtgatgcact |
31564723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 190 - 269
Target Start/End: Original strand, 15511673 - 15511752
Alignment:
| Q |
190 |
attgactcaaagaaagcacaaaatttatcaattctcttgcgagcattaaatgtgacactagaagaagttcgtgatgcact |
269 |
Q |
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|||||| ||||||||||||| |||||||||||||| ||||| || | ||||||||| || ||||||| ||||||||| |
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| T |
15511673 |
attgacccaaagaaagcacagaatttatcaattcttttgcgtgctctgaatgtgacaacagcagaagttgttgatgcact |
15511752 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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