View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10582_low_6 (Length: 364)
Name: NF10582_low_6
Description: NF10582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10582_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 328; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 19 - 354
Target Start/End: Original strand, 27447948 - 27448283
Alignment:
| Q |
19 |
acacagccgggtgtcctgacattcagaaatatatcatcgataggtgtatgtttattgatcgtcttcatgtgtgatgcccacaagaagttgcgcatcaccc |
118 |
Q |
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| T |
27447948 |
acacagccgggtgtcctgacattcagaaatatatcatcgataggtgtatgtttattgatcgtcttcatgtgtgatgcccacaagaagttgcgcatcaccc |
27448047 |
T |
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| Q |
119 |
aacttgggagaaaatcatatttccacttagatcttcatatgcgatgggagcaaggtcctgcatgacgcgcatgactgttttctgaaatttagggagtgtg |
218 |
Q |
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| T |
27448048 |
aacttgggagaaaatcatatttccacttagatcttcatatgcgatgggagcaaggtcctgcatgacgcgcatgactgttttctaaaatttagggagtgtg |
27448147 |
T |
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| Q |
219 |
gatctagaaatatttgcgaccttttcttctcaaatacttacttctggcgatctaaagttgataaaatcgactctagatggctaggagcggccggaaacat |
318 |
Q |
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| T |
27448148 |
gatctagaaatatttgcgaccttttcttctaaaatacttacttctggcgatctaaagttgataaaatcgactctagatggctaggagcggccggaaacat |
27448247 |
T |
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| Q |
319 |
cctggaggcaaggattcatcatccaataatcctatg |
354 |
Q |
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| T |
27448248 |
cctggaggcaaggattcatcatccaataatcctatg |
27448283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 169 - 343
Target Start/End: Original strand, 18091722 - 18091897
Alignment:
| Q |
169 |
caaggtcctgcatgacgcgcatgactgttttctgaaatttagggagtgtggatctagaaatatttgcgaccttttcttctcaaatactta-cttctggcg |
267 |
Q |
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| T |
18091722 |
caaggtcatgcgcgacgcacataaccgttttctgatattgagggagtttggatctataaatatatacgaccttttcttcacaaatacatatttttttatg |
18091821 |
T |
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| Q |
268 |
atctaaagttgataaaatcgactctagatggctaggagcggccggaaacatcctggaggcaaggattcatcatcca |
343 |
Q |
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| T |
18091822 |
atctaaagctgataaaatatattctagagggctaggagctgccgtaaacatcaaggaggcaaagattcatcgtcca |
18091897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 80 - 156
Target Start/End: Original strand, 18091469 - 18091545
Alignment:
| Q |
80 |
tcttcatgtgtgatgcccacaagaagttgcgcatcacccaacttgggagaaaatcatatttccacttagatcttcat |
156 |
Q |
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| T |
18091469 |
tcttcatgtgtgacgcccactaaaagctgcacatcacgcaacttgggagcaaatcagattaccatttacgtcttcat |
18091545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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