View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10582_low_7 (Length: 345)
Name: NF10582_low_7
Description: NF10582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10582_low_7 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 41 - 334
Target Start/End: Complemental strand, 3436684 - 3436391
Alignment:
| Q |
41 |
ttattttttacactatactagaaggacagcccaaataatcatgttcatttggtatttaagtcattctctcttctaaaaattgtatataattatgttcatt |
140 |
Q |
| |
|
|||||||||||| | |||||| |||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3436684 |
ttattttttacattggactagacggacagtccaaataattatgttcatttggtatttaagtcattctctcttctaaaaattgtatataattatgttcatt |
3436585 |
T |
|
| Q |
141 |
tgttttgttacttctaatttannnnnnngaccgaaattttgttacttttaattaaaatgaaggaaaaacaaaaattaaagtggtcgtgtttcctcattgt |
240 |
Q |
| |
|
|||||||||||||||| ||| | |||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| ||||||| |
|
|
| T |
3436584 |
tgttttgttacttctatttttttttttttatcgaaattttgttacttctaattaaaatgaaggaaaaacaaaaatcaaagtggtcgtgtttcatcattgt |
3436485 |
T |
|
| Q |
241 |
ttcttaactcttgttctcctatgatgttaaaaatgttatgcttttattccccacttttgaaacccttttgcttatggttgcattgtgatttcat |
334 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3436484 |
ttcttaacttttgttctcctatgatgttaaaaatgttatgcttttattccccacttttgaaacccttttgcttatggttgcattgtgatttcat |
3436391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 41 - 332
Target Start/End: Complemental strand, 40917841 - 40917548
Alignment:
| Q |
41 |
ttattttttacactatactagaaggacagcccaaataatcatgttcatttggta-tttaagtcattctctcttctaaaaattgtatataattatgttcat |
139 |
Q |
| |
|
|||||||||||||| ||| || |||||||||||||||| |||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
40917841 |
ttattttttacactggactggacggacagcccaaataattatgttcatttggtactttaagtcattctatcttctaaaaattgtatataattatgttcat |
40917742 |
T |
|
| Q |
140 |
ttgttttgttacttctaat-ttannnnnnngaccgaaattttgttacttttaattaaaatgaaggaaaaacaaaaattaaagtggtcgtgtttcctcatt |
238 |
Q |
| |
|
||||||||||||||||||| || ||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| ||||| |
|
|
| T |
40917741 |
ttgttttgttacttctaatattttttttttgaccgaaattttgttacttctaattaaaatgaaggaaaaacaaaaatcaaagtggtcgtgtttcatcatt |
40917642 |
T |
|
| Q |
239 |
gtttcttaactcttgttctcctatgatgttaaaaatgttatgcttttattccccacttttgaaacccttttgcttatggttgcattgtgatttc |
332 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
40917641 |
gtttcttaactcttgttctcctatgatgttaaaaacgttatgcttttattccccacttttgaaacccttttgcttatagttgcattgtgatttc |
40917548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 68 - 332
Target Start/End: Complemental strand, 20338422 - 20338158
Alignment:
| Q |
68 |
agcccaaataatcatgttcatttggtatttaagtcattctctcttctaaaaattgtatataattatgttcatttgttttgttacttctaatttannnnnn |
167 |
Q |
| |
|
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |
|
|
| T |
20338422 |
agcccaaataattatgttcatttgatatttaagtcattctctcttctaaaaattgtacatacttatgttcatttgttttgttacttctaatttatttttt |
20338323 |
T |
|
| Q |
168 |
ngaccgaaattttgttacttttaattaaaatgaaggaaaaacaaaaattaaagtggtcgtgtttcctcattgtttcttaactcttgttctcctatgatgt |
267 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| ||||||||||||||| |
|
|
| T |
20338322 |
ttaccgaaattttgttacttctaattaaaatgaaggaaaaacaaaaatcaaagtggtcgtgtttcatcattgtttcttaactctcgttctcctatgatgt |
20338223 |
T |
|
| Q |
268 |
taaaaatgttatgcttttattccccacttttgaaacccttttgcttatggttgcattgtgatttc |
332 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20338222 |
taaaaatgttatgcttttattccccacttttgaaacccttttgcttatggttgcattgtgatttc |
20338158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 41 - 332
Target Start/End: Original strand, 41201942 - 41202232
Alignment:
| Q |
41 |
ttattttttacactatactagaaggacagcccaaataatcatgttcatttggtatttaagtcattctctcttctaaaaattgtatataattatgttcatt |
140 |
Q |
| |
|
|||||||||||||| | | || ||||| ||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41201942 |
ttattttttacactggattggacggacaatccaaataattatgttcatttgatatttaagtcattctctcttctaaaaattgtatataattatgttcatt |
41202041 |
T |
|
| Q |
141 |
tgttttgttacttctaatttannnnnnngaccgaaattttgttacttttaattaaaatgaaggaaaaacaaaaattaaagtggtcgtgtttcctcattgt |
240 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| ||||||| |
|
|
| T |
41202042 |
tgttttgttacttctaattt-tttttttgaccgaaattttgttacttctaattaaaatgaaggaaaaacaaaaatcaaagtggtcgtgtttcatcattgt |
41202140 |
T |
|
| Q |
241 |
ttcttaactcttgttctcctatgatgttaaaaatgttatgcttttattccccacttttgaaacccttttgcttatggttgcattgtgatttc |
332 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41202141 |
ttcttaactcttgttctcctatgatgttaaaaatgttatgcttttattccccacttttgaaacccttttgcttatggttgcattgtgatttc |
41202232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 64 - 332
Target Start/End: Complemental strand, 17475652 - 17475385
Alignment:
| Q |
64 |
ggacagcccaaataatcatgttcatttggtatttaagtcattctctcttctaaaaattgtatataattatgttcatttgttttgttacttctaatttann |
163 |
Q |
| |
|
||||||||||| |||| ||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
17475652 |
ggacagcccaactaattatgttcatttggtatttaagttattctttcttctaaaaattgtatatacttatgttcatttgttttgttacttctaattt-tt |
17475554 |
T |
|
| Q |
164 |
nnnnngaccgaaattttgttacttttaattaaaatgaaggaaaaacaaaaattaaagtggtcgtgtttcctcattgtttcttaactcttgttctcctatg |
263 |
Q |
| |
|
|||||||||||||||| || ||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
17475553 |
tttttgaccgaaattttgttatttctaattaaaatgaaggaaaaacaaaaatcaaagtggtcgtgtttcatcattgtttcttaactcttgttctcctatg |
17475454 |
T |
|
| Q |
264 |
atgttaaaaatgttatgcttttattccccacttttgaaacccttttgcttatggttgcattgtgatttc |
332 |
Q |
| |
|
|| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17475453 |
atattaaaaatgttatgcttttattcctcacttttgaaacccttttgcttatggttgcattgtgatttc |
17475385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 64 - 332
Target Start/End: Original strand, 17577562 - 17577829
Alignment:
| Q |
64 |
ggacagcccaaataatcatgttcatttggtatttaagtcattctctcttctaaaaattgtatataattatgttcatttgttttgttacttctaatttann |
163 |
Q |
| |
|
||||||||||| |||| ||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
17577562 |
ggacagcccaactaattatgttcatttggtatttaagttattctttcttctaaaaattgtatatacttatgttcatttgttttgttacttctaattt-tt |
17577660 |
T |
|
| Q |
164 |
nnnnngaccgaaattttgttacttttaattaaaatgaaggaaaaacaaaaattaaagtggtcgtgtttcctcattgtttcttaactcttgttctcctatg |
263 |
Q |
| |
|
|||||||||||||||| || ||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
17577661 |
tttttgaccgaaattttgttatttctaattaaaatgaaggaaaaacaaaaatcaaagtggtcgtgtttcatcattgtttcttaactcttgttctcctatg |
17577760 |
T |
|
| Q |
264 |
atgttaaaaatgttatgcttttattccccacttttgaaacccttttgcttatggttgcattgtgatttc |
332 |
Q |
| |
|
|| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17577761 |
atattaaaaatgttatgcttttattcctcacttttgaaacccttttgcttatggttgcattgtgatttc |
17577829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 41 - 332
Target Start/End: Complemental strand, 17511259 - 17510969
Alignment:
| Q |
41 |
ttattttttacactatactagaaggacagcccaaataatcatgttcatttggtatttaagtcattctctcttctaaaaattgtatataattatgttcatt |
140 |
Q |
| |
|
||||||||||||| ||| || ||||||||||| |||| ||||||||| ||||||||||| ||||| |||||||||||||||||||| ||||||||||| |
|
|
| T |
17511259 |
ttattttttacacggaactggacggacagcccaactaattatgttcattcggtatttaagttattctttcttctaaaaattgtatatacttatgttcatt |
17511160 |
T |
|
| Q |
141 |
tgttttgttacttctaatttannnnnnngaccgaaattttgttacttttaattaaaatgaaggaaaaacaaaaattaaagtggtcgtgtttcctcattgt |
240 |
Q |
| |
|
|||||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| ||||||| |
|
|
| T |
17511159 |
tgttttgttacttctatttt-tttttttgaccgaaattttgttacttctaattaaaatgaaggaaaaacaaaaatcaaagtggtcgtgtttcatcattgt |
17511061 |
T |
|
| Q |
241 |
ttcttaactcttgttctcctatgatgttaaaaatgttatgcttttattccccacttttgaaacccttttgcttatggttgcattgtgatttc |
332 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
17511060 |
ttcttaactcttgttctcctatgatgttaaaaatgttatgcttttattcctcacttttgaaatccttttgcttatggttgcattgtgatttc |
17510969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 41 - 332
Target Start/End: Original strand, 17541955 - 17542245
Alignment:
| Q |
41 |
ttattttttacactatactagaaggacagcccaaataatcatgttcatttggtatttaagtcattctctcttctaaaaattgtatataattatgttcatt |
140 |
Q |
| |
|
||||||||||||| ||| || ||||||||||| |||| ||||||||| ||||||||||| ||||| |||||||||||||||||||| ||||||||||| |
|
|
| T |
17541955 |
ttattttttacacggaactggacggacagcccaactaattatgttcattcggtatttaagttattctttcttctaaaaattgtatatacttatgttcatt |
17542054 |
T |
|
| Q |
141 |
tgttttgttacttctaatttannnnnnngaccgaaattttgttacttttaattaaaatgaaggaaaaacaaaaattaaagtggtcgtgtttcctcattgt |
240 |
Q |
| |
|
|||||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| ||||||| |
|
|
| T |
17542055 |
tgttttgttacttctatttt-tttttttgaccgaaattttgttacttctaattaaaatgaaggaaaaacaaaaatcaaagtggtcgtgtttcatcattgt |
17542153 |
T |
|
| Q |
241 |
ttcttaactcttgttctcctatgatgttaaaaatgttatgcttttattccccacttttgaaacccttttgcttatggttgcattgtgatttc |
332 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
17542154 |
ttcttaactcttgttctcctatgatgttaaaaatgttatgcttttattcctcacttttgaaatccttttgcttatggttgcattgtgatttc |
17542245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 41 - 332
Target Start/End: Original strand, 49112686 - 49112979
Alignment:
| Q |
41 |
ttattttttacactatactagaaggacagcccaaataatcatgttcatttggtatttaagtcattctctcttctaaaaattgtatataattatgttcatt |
140 |
Q |
| |
|
|||||||||||||| ||| || |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |
|
|
| T |
49112686 |
ttattttttacacttgactggacggacagcccaaataattatgttcatttggtatttaagtcattctctcttctaaaaattgtatatgattatgtt-att |
49112784 |
T |
|
| Q |
141 |
tgttttgttacttctaatttannnnnnngaccgaaattttgttacttttaattaaaatgaaggaaaaacaaaaattaaagtggtcgtgtttcctcattgt |
240 |
Q |
| |
|
|||||||||||||||| ||| |||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| ||||||| |
|
|
| T |
49112785 |
tgttttgttacttctatttttttttttt-accgaaattttgttacttctaattaaaatgaaggaaaaacaaaaatcaaagtggtcgtgtttcatcattgt |
49112883 |
T |
|
| Q |
241 |
ttcttaactcttgttctcctatgatgttaaaaatgttatgcttttattccccacttttgaaac----ccttttgcttatggttgcattgtgatttc |
332 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
49112884 |
ttctcaactcttgttctcctatgatgttaaaaatgttatgcttttattccccacttttgaaactctaccttttgcttatggttgcattgtgatttc |
49112979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 41 - 276
Target Start/End: Original strand, 4267005 - 4267239
Alignment:
| Q |
41 |
ttattttttacactatactagaaggacagcccaaataatcatgttcatttggtatttaagtcattctctcttctaaaaattgtatataattatgttcatt |
140 |
Q |
| |
|
|||||||||||||| ||| || |||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4267005 |
ttattttttacactggactggacggacagcccaaataattatgttcatttgatatttaagtcattctctcttctaaaaattgtatataattatgttcatt |
4267104 |
T |
|
| Q |
141 |
tgttttgttacttctaatttannnnnnngaccgaaattttgttacttttaattaaaatgaaggaaaaacaaaaattaaagtggtcgtgtttcctcattgt |
240 |
Q |
| |
|
||||||||||||| |||||| |||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| ||||||| |
|
|
| T |
4267105 |
tgttttgttacttttaattttttttgtt-accgaaattttgttacttctaattaaaatgaaggaaaaacaaaaatcaaagtggtcgtgtttcatcattgt |
4267203 |
T |
|
| Q |
241 |
ttcttaactcttgttctcctatgatgttaaaaatgt |
276 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
4267204 |
ttcttaactcttgttctcctatgatgttaaaaatgt |
4267239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 304 - 332
Target Start/End: Original strand, 4267246 - 4267274
Alignment:
| Q |
304 |
ccttttgcttatggttgcattgtgatttc |
332 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
4267246 |
ccttttgcttatggttgcattgtgatttc |
4267274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 64 - 332
Target Start/End: Complemental strand, 48470360 - 48470089
Alignment:
| Q |
64 |
ggacagcccaaataatcatgttcatttggtatttaagtcattctctcttctaaaaattgtatataattatgttcatttgttttgttacttctaatttann |
163 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48470360 |
ggacagcccaaataattatgttcatttggtatttaagtcattctctcttctaaaaattgtatataattatgttcatttgttttgttacttctaattttta |
48470261 |
T |
|
| Q |
164 |
nnnnn---gaccgaaattttgttacttttaattaaaatgaaggaaaaacaaaaattaaagtggtcgtgtttcctcattgtttcttaactcttgttctcct |
260 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
48470260 |
ttttttttgaccgaaattttgttacttctaattaaaatgaaggaaaaacaaaaatcaaagtggtcgtgtttcatcattgtttcttaactcttgttctcct |
48470161 |
T |
|
| Q |
261 |
atgatgttaaaaatgttatgcttttattccccacttttgaaacccttttgcttatggttgcattgtgatttc |
332 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48470160 |
atgatgttaaaaatgttatgcttttactccccacttttgaaacccttttgcttatggttgcattgtgatttc |
48470089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 44 - 332
Target Start/End: Original strand, 17331423 - 17331718
Alignment:
| Q |
44 |
ttttttacactatactagaaggacagcccaaataatcatgttcatttggtatttaagtcattctctcttctaaaaattgtatataattatgttcatttgt |
143 |
Q |
| |
|
||||||||||| ||| || ||||| |||| |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |
|
|
| T |
17331423 |
ttttttacactggactggacggacaacccacgtaattatgttcatttggtatttaagtcattctctcttttaaaaattgtatataattatgtttatttgt |
17331522 |
T |
|
| Q |
144 |
tttgttacttctaatttannnnnnn---gaccgaaattttgttacttttaattaaaatgaaggaaaaacaaaaattaaagtggtcgtgtttcctcattgt |
240 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| ||||||| |
|
|
| T |
17331523 |
tttgttacttctaatttttattttttttgaccgaaattttgttacttctaattaaaatgaaggaaaaacaaaaatcaaagtggtcgtgtttcatcattgt |
17331622 |
T |
|
| Q |
241 |
ttcttaactcttgttctcctatgatgttaaaaatgttatgcttttattccccacttttgaaac----ccttttgcttatggttgcattgtgatttc |
332 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
17331623 |
ttcttaactcttgttctcctatgatgttaaaaatgttatgcttttattccccacttttgaaaccctaccttttgcttatggttgcattgtgatttc |
17331718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 184 - 332
Target Start/End: Complemental strand, 49229118 - 49228970
Alignment:
| Q |
184 |
acttttaattaaaatgaaggaaaaacaaaaattaaagtggtcgtgtttcctcattgtttcttaactcttgttctcctatgatgttaaaaatgttatgctt |
283 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| ||||||||| |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49229118 |
acttctaattaaaatgaaggaaaaacaaaaatcaaagtggtcatgtttcatcattgtttcttgactcttgttctcctatgatgttaaaaatgttatgctt |
49229019 |
T |
|
| Q |
284 |
ttattccccacttttgaaacccttttgcttatggttgcattgtgatttc |
332 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49229018 |
ttatttcccacttttgaaacccttttgcttatggttgcattgtgatttc |
49228970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 177 - 331
Target Start/End: Original strand, 45566012 - 45566171
Alignment:
| Q |
177 |
ttttgttacttttaattaaaatgaaggaaaaacaaaaattaaagtggtcgtgtttcctcattgtttctt-aactcttgttctcctatgatgttaaaaatg |
275 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||| |||||| ||||||||| ||||||||| || ||||||| |||||||||||||||||||||| |
|
|
| T |
45566012 |
ttttgttacttctaattaaaatgaaggaaaaacaaaaatcaaagtgatcgtgtttcatcattgtttttttaactcttcttctcctatgatgttaaaaatg |
45566111 |
T |
|
| Q |
276 |
ttatgcttttattccccacttttgaaac----ccttttgcttatggttgcattgtgattt |
331 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
45566112 |
ttatgcttttattccccacttttgaaaccctaccttttgcttatggttgcattgtgattt |
45566171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 176 - 332
Target Start/End: Original strand, 4221128 - 4221275
Alignment:
| Q |
176 |
attttgttacttttaattaaaatgaaggaaaaacaaaaattaaagtggtcgtgtttcctcattgtttcttaactcttgttctcctatgatgttaaaaatg |
275 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| ||||| |
|
|
| T |
4221128 |
attttgttacttctaattaaaatgaaggaaaaacaaaaatcaaagtggtcgtgtttcatcattgtttcttaactcttgttctcct---------gaaatg |
4221218 |
T |
|
| Q |
276 |
ttatgcttttattccccacttttgaaacccttttgcttatggttgcattgtgatttc |
332 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| |
|
|
| T |
4221219 |
ttatgcttttattccccacttttaaaacccttttgcttatagttgcattgtgatttc |
4221275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 64 - 159
Target Start/End: Original strand, 45565933 - 45566028
Alignment:
| Q |
64 |
ggacagcccaaataatcatgttcatttggtatttaagtcattctctcttctaaaaattgtatataattatgttcatttgttttgttacttctaatt |
159 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45565933 |
ggacagcccaaataattatgttcatttggtatttaagtcattctctcttctaaaaattgtatataattatgttcatttgttttgttacttctaatt |
45566028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 57 - 159
Target Start/End: Original strand, 4221043 - 4221145
Alignment:
| Q |
57 |
actagaaggacagcccaaataatcatgttcatttggtatttaagtcattctctcttctaaaaattgtatataattatgttcatttgttttgttacttcta |
156 |
Q |
| |
|
|||||| |||||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
4221043 |
actagacggacagcccaaatagttatgttcatttgatatttaagtcattctctcttctaaaaattgtatataattatgttcatttattttgttacttcta |
4221142 |
T |
|
| Q |
157 |
att |
159 |
Q |
| |
|
||| |
|
|
| T |
4221143 |
att |
4221145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 203; Significance: 1e-111; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 66 - 332
Target Start/End: Original strand, 9470993 - 9471260
Alignment:
| Q |
66 |
acagcccaaataatcatgttcatttggtatttaagtcattctctcttctaaaaattgtatataattatgttcatttgttttgttacttctaatt-tannn |
164 |
Q |
| |
|
|||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
9470993 |
acagtccaaataattatgttcatttggtatttaagtcattctctcttctaaaaattgtatataattatgttcatttgttttgttacttctaattattatt |
9471092 |
T |
|
| Q |
165 |
nnnngaccgaaattttgttacttttaattaaaatgaaggaaaaacaaaaattaaagtggtcgtgtttcctcattgtttcttaactcttgttctcctatga |
264 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |||||| |||||||||||| |||||||||||||||||| |
|
|
| T |
9471093 |
tttttaccgaaattttgttacttctaattaaaatgaaggaaaaacaaaaatcaaagtggtcatgtttcatcattgtttcttgactcttgttctcctatga |
9471192 |
T |
|
| Q |
265 |
tgttaaaaatgttatgcttttattccccacttttgaaacccttttgcttatggttgcattgtgatttc |
332 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9471193 |
tgttaaaaatgttatgcttttattccccacttttgaaacccttttgcttatggttgcattgtgatttc |
9471260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 193 - 332
Target Start/End: Original strand, 17920992 - 17921131
Alignment:
| Q |
193 |
taaaatgaaggaaaaacaaaaattaaagtggtcgtgtttcctcattgtttcttaactcttgttctcctatgatgttaaaaatgttatgcttttattcccc |
292 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
17920992 |
taaaatgaaggaaaaacaaaaatcaaagtggtcgtgtttcatcattgtttcttaactcttgttctcctataatgttaaaaatgttatgtttttattcccc |
17921091 |
T |
|
| Q |
293 |
acttttgaaacccttttgcttatggttgcattgtgatttc |
332 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17921092 |
acttttgaaacccttttgcttatggttgcattgtgatttc |
17921131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 41 - 126
Target Start/End: Original strand, 17920908 - 17920993
Alignment:
| Q |
41 |
ttattttttacactatactagaaggacagcccaaataatcatgttcatttggtatttaagtcattctctcttctaaaaattgtata |
126 |
Q |
| |
|
|||||||||||||| ||| || ||||| ||||||| | |||||||||||||||||||||||||||| |||||||| |||||||| |
|
|
| T |
17920908 |
ttattttttacactggactggacggacaatccaaatagttatgttcatttggtatttaagtcattctcacttctaaatattgtata |
17920993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 43 - 332
Target Start/End: Complemental strand, 12272180 - 12271889
Alignment:
| Q |
43 |
attttttacactatactagaaggacagcccaaataatcatgttcatttggtatttaagtcattctctcttctaaaaattgtatataattatgttcatttg |
142 |
Q |
| |
|
|||||||||||| ||| || |||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12272180 |
attttttacactggactggacggacagtccaaataattttgttcatttggtatttaagtcattctctcttctaaaaattgtatataattatgttcatttg |
12272081 |
T |
|
| Q |
143 |
ttttgttacttctaatttannnnnnng--accgaaattttgttacttttaattaaaatgaaggaaaaacaaaaattaaagtggtcgtgtttcctcattgt |
240 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |||||| ||||||| |
|
|
| T |
12272080 |
ttttgttacttctaattttatttttttttaccgaaattttgttacttctaattaaaatgaaggaaaaacaaaaatcaaagtggtcatgtttcatcattgt |
12271981 |
T |
|
| Q |
241 |
ttcttaactcttgttctcctatgatgttaaaaatgttatgcttttattccccacttttgaaacccttttgcttatggttgcattgtgatttc |
332 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
12271980 |
ttcttaactcttgttctcctatgatgttaaaaatgttatgcttttattccccacttttgaaacccttttgcttatggttgcataatgatttc |
12271889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 41 - 332
Target Start/End: Complemental strand, 12076607 - 12076318
Alignment:
| Q |
41 |
ttattttttacactatactagaaggacagcccaaataatcatgttcatttggtatttaagtcattctctcttctaaaaattgtatataattatgttcatt |
140 |
Q |
| |
|
|||||||||||||| ||| || ||||| |||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
12076607 |
ttattttttacactggactggacggacaacccaaataattatgttcatttggtatttaagtcatttgctcttctaaaaattgtatataattatgttcatt |
12076508 |
T |
|
| Q |
141 |
tgttttgttacttctaatttannnnnnngaccgaaattttgttacttttaattaaaatgaaggaaaaacaaaaattaaagtggtcgtgtttcctcattgt |
240 |
Q |
| |
|
||||||||||||| |||||| |||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| ||||||| |
|
|
| T |
12076507 |
tgttttgttacttttaatttttttttt--accgaaattttgttacttctaattaaaatgaaggaaaaacaaaaatcaaagtggtcgtgtttcatcattgt |
12076410 |
T |
|
| Q |
241 |
ttcttaactcttgttctcctatgatgttaaaaatgttatgcttttattccccacttttgaaacccttttgcttatggttgcattgtgatttc |
332 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
12076409 |
ttcttaactcttgttctcctatgatgttaaaaatgttatgcatttattccccgcttttgaaacccttttgcttctggttgcattgtgatttc |
12076318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 41 - 332
Target Start/End: Complemental strand, 50737909 - 50737614
Alignment:
| Q |
41 |
ttattttttacactatactagaaggacagcccaaataatcatgttcatttggtatttaagtcattctctcttctaaaaattgtatataattatgttcatt |
140 |
Q |
| |
|
||||||||||||| ||| || |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
50737909 |
ttattttttacacgggactggacggacagcccaaataattatgttcatttggtatttaagtcattctctcttctaaaaattgtatatacttatgttcata |
50737810 |
T |
|
| Q |
141 |
tgttttgttacttctaatttannnnnnn-gaccgaaattttgttactttta---attaaaatgaaggaaaaacaaaaattaaagtggtcgtgtttcctca |
236 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||| | ||||||||||||||||||||||||| |||||||||||||||| ||| |
|
|
| T |
50737809 |
tgttttgttacttctaatttattttttttgaccgaaattttgttacttcttctgattaaaatgaaggaaaaacaaaaatcaaagtggtcgtgtttcatca |
50737710 |
T |
|
| Q |
237 |
ttgtttcttaactcttgttctcctatgatgttaaaaatgttatgcttttattccccacttttgaaacccttttgcttatggttgcattgtgatttc |
332 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| |
|
|
| T |
50737709 |
ttgtttcttaactcttgttctcctatgatgttaaaaatgttatgcttttattccccacttatgaaacccttttgtttatggttgcattgtgatttc |
50737614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 41 - 332
Target Start/End: Original strand, 50774946 - 50775241
Alignment:
| Q |
41 |
ttattttttacactatactagaaggacagcccaaataatcatgttcatttggtatttaagtcattctctcttctaaaaattgtatataattatgttcatt |
140 |
Q |
| |
|
||||||||||||| ||| || |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
50774946 |
ttattttttacacgggactggacggacagcccaaataattatgttcatttggtatttaagtcattctctcttctaaaaattgtatatacttatgttcata |
50775045 |
T |
|
| Q |
141 |
tgttttgttacttctaatttannnnnnn-gaccgaaattttgttactttta---attaaaatgaaggaaaaacaaaaattaaagtggtcgtgtttcctca |
236 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||| | ||||||||||||||||||||||||| |||||||||||||||| ||| |
|
|
| T |
50775046 |
tgttttgttacttctaatttattttttttgaccgaaattttgttacttcttctgattaaaatgaaggaaaaacaaaaatcaaagtggtcgtgtttcatca |
50775145 |
T |
|
| Q |
237 |
ttgtttcttaactcttgttctcctatgatgttaaaaatgttatgcttttattccccacttttgaaacccttttgcttatggttgcattgtgatttc |
332 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| |
|
|
| T |
50775146 |
ttgtttcttaactcttgttctcctatgatgttaaaaatgttatgcttttattccccacttatgaaacccttttgtttatggttgcattgtgatttc |
50775241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 177 - 332
Target Start/End: Complemental strand, 26844365 - 26844211
Alignment:
| Q |
177 |
ttttgttacttttaattaaaatgaaggaaaaacaaaaattaaagtggtcgtgtttcctcattgtttcttaactcttgttctcctatgatgttaaaaatgt |
276 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||| |||||| ||||||| | ||||||||||||||||||||||||||| | || |||||||||| |
|
|
| T |
26844365 |
ttttgttacttctaattaaaatgaaggaaaaacaaaaatcaaagtgatcgtgtt-catcattgtttcttaactcttgttctcctgtaatattaaaaatgt |
26844267 |
T |
|
| Q |
277 |
tatgcttttattccccacttttgaaacccttttgcttatggttgcattgtgatttc |
332 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||| ||| |||||| ||||| |
|
|
| T |
26844266 |
tatgcttttattccccacttttaaaacccttttgcttatagttacattgttatttc |
26844211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 41 - 159
Target Start/End: Complemental strand, 26844467 - 26844349
Alignment:
| Q |
41 |
ttattttttacactatactagaaggacagcccaaataatcatgttcatttggtatttaagtcattctctcttctaaaaattgtatataattatgttcatt |
140 |
Q |
| |
|
|||||||| |||||| ||| || ||||| |||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26844467 |
ttatttttgacactagactggacggacaacccaaatagttatgttcatttggtatttaagtcattctctcttctaaaaattgtatataattatgttcatt |
26844368 |
T |
|
| Q |
141 |
tgttttgttacttctaatt |
159 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
26844367 |
tgttttgttacttctaatt |
26844349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 128; Significance: 4e-66; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 177 - 332
Target Start/End: Original strand, 16029958 - 16030112
Alignment:
| Q |
177 |
ttttgttacttttaattaaaatgaaggaaaaacaaaaattaaagtggtcgtgtttcctcattgtttcttaactcttgttctcctatgatgttaaaaatgt |
276 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||| ||||||||||||| | ||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
16029958 |
ttttgttacttctaattaaaatgaaggaaaaacaaaaatcgaagtggtcgtgtt-catcattgtttcttaactcttgttctcctataatgttaaaaatgt |
16030056 |
T |
|
| Q |
277 |
tatgcttttattccccacttttgaaacccttttgcttatggttgcattgtgatttc |
332 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16030057 |
tatgcttttattccccacttttgaaacccttttgcttatggttgcattgtgatttc |
16030112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 177 - 332
Target Start/End: Original strand, 50004987 - 50005142
Alignment:
| Q |
177 |
ttttgttacttttaattaaaatgaaggaaaaacaaaaattaaagtggtcgtgtttcctcattgtttcttaactcttgttctcctatgatgttaaaaatgt |
276 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| ||| |||||||| ||||||| ||||||||||||||||||||||||||| | ||||||||||||| |
|
|
| T |
50004987 |
ttttgttacttctaattaaaatgaaggaaaaacaataatcaaagtggttgtgtttcatcattgtttcttaactcttgttctcctgtaatgttaaaaatgt |
50005086 |
T |
|
| Q |
277 |
tatgcttttattccccacttttgaaacccttttgcttatggttgcattgtgatttc |
332 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50005087 |
tatgcttttattccccacttttgaaacccttttgcttatggttgcattgtgatttc |
50005142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 41 - 159
Target Start/End: Original strand, 50004885 - 50005003
Alignment:
| Q |
41 |
ttattttttacactatactagaaggacagcccaaataatcatgttcatttggtatttaagtcattctctcttctaaaaattgtatataattatgttcatt |
140 |
Q |
| |
|
|||||||| ||||| ||| || |||||||||||||| | ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
50004885 |
ttatttttgacactggactggacggacagcccaaatagttatgttcatttgatatttaagtcattctctcttttaaaaattgtatataattatgttcatt |
50004984 |
T |
|
| Q |
141 |
tgttttgttacttctaatt |
159 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
50004985 |
tgttttgttacttctaatt |
50005003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 44 - 159
Target Start/End: Original strand, 16029859 - 16029974
Alignment:
| Q |
44 |
ttttttacactatactagaaggacagcccaaataatcatgttcatttggtatttaagtcattctctcttctaaaaattgtatataattatgttcatttgt |
143 |
Q |
| |
|
|||||||||||| ||| | ||||| |||||||| | ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
16029859 |
ttttttacactagactgggcggacaacccaaatagttatgttcattaggtatttaagtcattctctcttctaaaaattatatataattatgttcatttgt |
16029958 |
T |
|
| Q |
144 |
tttgttacttctaatt |
159 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
16029959 |
tttgttacttctaatt |
16029974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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