View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10583_1 (Length: 818)
Name: NF10583_1
Description: NF10583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10583_1 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 716; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 716; E-Value: 0
Query Start/End: Original strand, 1 - 818
Target Start/End: Original strand, 50407870 - 50408714
Alignment:
| Q |
1 |
tttggtgcacaatggccattggtttttgccataatttcggagttgtttgggttgaaatattattcaactttgatgaactttggtggggtagctagtccaa |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50407870 |
tttggtgcacaatggccattggtttttgccataatttcggagttgtttgggttgaaatattattcaactttgatgaactttggtggggtagctagtccaa |
50407969 |
T |
|
| Q |
101 |
ttggattatattttcttaatgttagggtcgctggtcatttatatgacaaagaagctaagaggcaattgattgaaaaaggagtacaaagaaaattgggtca |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
50407970 |
ttggattatattttcttaatgttagggtcgctggtcatttatatgacaaagaagctaagaggcaattgattgaaaaaggagtaaaaagaaaattgggtca |
50408069 |
T |
|
| Q |
201 |
ggaattgaattgtgtaggagcaagttgtttcagattgtctttcattattatcactgcagctactttgtttggtgccattatttcacttattttagtggcc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50408070 |
ggaattgaattgtgtaggagcaagttgtttcagattgtctttcattattatcactgcagctactttgtttggtgccattatttcacttattttagtggcc |
50408169 |
T |
|
| Q |
301 |
agaacaattaagttttataaaggtgatatatacaagaggtaccgatcagagcaggttgaagttgaaggagctacggctgagatgacggtggtccaaaatg |
400 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50408170 |
agaacaaataagttttataaaggtgatatatacaagaggtaccgatcagagcaggttgaagttgaaggagctacggctgagatgacggtggtccaaaatg |
50408269 |
T |
|
| Q |
401 |
acggcaagagaggaaaggaa------------acagtgatg----tgattcattgatgtataggggttgaa----------tgttgaatgttgattggtg |
474 |
Q |
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|||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
50408270 |
acggcaagagaggaaaggaagaagcaaaagctacagtgatgtgattgattcattgatgtataggggttgaatgttgaatgttgttgaatgttgattggtg |
50408369 |
T |
|
| Q |
475 |
tttcaatgttgatttataagcaaatttcactaccactaggacgacaatgactaggaaccg-aaaaacaattcaatccatttttgtgtctatagtatagga |
573 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |
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| T |
50408370 |
tttgaatgttgatttataagcaaatttcactaccactaggacgacaatgactaggaaccgaaaaaaaaattcaatccatttttgtgtctatagtatagga |
50408469 |
T |
|
| Q |
574 |
ccgctttctttttcaatacccatctttcactgtaatcatgtgataaatatagggaatcaattataatatctaattttggctatacatgaatgaattttgt |
673 |
Q |
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| T |
50408470 |
ccgctttctttttcaatacccatctttcactgtactcatgtgataaatatagggaatcaattataatatctaattttggctatacatgaatgaattttgt |
50408569 |
T |
|
| Q |
674 |
gtattcaactttggcattttcttgcgtgcaacattttgctgtctcagctacgtgcttggtttggcaccatatagcaaattgttagttacttgtttaaagt |
773 |
Q |
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| T |
50408570 |
gtattcaactttggcattttcttgtgtccaacattttgctgtctcagctacgtgcttggtttggcaccatatagcaaattgttagttacttgtttaaagt |
50408669 |
T |
|
| Q |
774 |
aaattaacaatgatgattacttgtaaaaagaataaaaaatcacaa |
818 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50408670 |
aaattaacaatgatgattacttgtaaaaagaataaaaaatcacaa |
50408714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 1 - 338
Target Start/End: Original strand, 50385841 - 50386178
Alignment:
| Q |
1 |
tttggtgcacaatggccattggtttttgccataatttcggagttgtttgggttgaaatattattcaactttgatgaactttggtggggtagctagtccaa |
100 |
Q |
| |
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|||||||| ||||||||||| |||||||||| || || || | ||||| | ||||||||| |||||||| || ||||| | ||||| ||||| |
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| T |
50385841 |
tttggtgctcaatggccattactttttgccattatatcagaactttttggacttaaatattatgcaactttgtataattttggaagtgtagcaagtcccc |
50385940 |
T |
|
| Q |
101 |
ttggattatattttcttaatgttagggtcgctggtcatttatatgacaaagaagctaagaggcaattgattgaaaaaggagtacaaagaaaattgggtca |
200 |
Q |
| |
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||||||||||| | |||||||| | | ||||||||||||| |||||||||||||| |||| ||||||| | | ||| ||||||| | || || |
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| T |
50385941 |
ttggattatatgtgcttaatgtgaagatcgctggtcatttgtatgacaaagaagcaaagaagcaattggaagcacttggaaagcaaagaatagaagggca |
50386040 |
T |
|
| Q |
201 |
ggaattgaattgtgtaggagcaagttgtttcagattgtctttcattattatcactgcagctactttgtttggtgccattatttcacttattttagtggcc |
300 |
Q |
| |
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||||||||||||||| || | ||||| || || ||||||||||||||||| || || || || |||||||| || ||||||||||||| ||||| |
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| T |
50386041 |
ggaattgaattgtgttggtgttgattgttacaagttatctttcattattatcacagctgcaacattttttggtgctgttgtttcacttattttggtggct |
50386140 |
T |
|
| Q |
301 |
agaacaattaagttttataaaggtgatatatacaagag |
338 |
Q |
| |
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|| || | |||||||| |||||||| ||||||||||| |
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| T |
50386141 |
aggaccagaaagttttacaaaggtgacatatacaagag |
50386178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 160
Target Start/End: Original strand, 50394260 - 50394419
Alignment:
| Q |
1 |
tttggtgcacaatggccattggtttttgccataatttcggagttgtttgggttgaaatattattcaactttgatgaactttggtggggtagctagtccaa |
100 |
Q |
| |
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|||||||| ||||||||||| |||||||||| || || || | ||||| | ||||||||| |||||||| || ||||| | ||||| |||||| |
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| T |
50394260 |
tttggtgctcaatggccattactttttgccattatatcagaactttttggacttaaatattatgcaactttgtataattttggaagtgtagcaagtccac |
50394359 |
T |
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| Q |
101 |
ttggattatattttcttaatgttagggtcgctggtcatttatatgacaaagaagctaaga |
160 |
Q |
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||||||||||| | |||||||| | | || |||||||||| ||||||||||| ||||||| |
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| T |
50394360 |
ttggattatatgtgcttaatgtgaagatcactggtcatttgtatgacaaagaggctaaga |
50394419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 225 - 342
Target Start/End: Original strand, 50394484 - 50394601
Alignment:
| Q |
225 |
ttgtttcagattgtctttcattattatcactgcagctactttgtttggtgccattatttcacttattttagtggccagaacaattaagttttataaaggt |
324 |
Q |
| |
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|||||||| || |||||||||||||| || || || || || |||||||| || ||||||||||||| ||| | || || | |||||||| |||||| |
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| T |
50394484 |
ttgtttcaagttatctttcattattattacagctgcaacattttttggtgctgttgtttcacttattttggtgtctaggactagaaagttttacaaaggt |
50394583 |
T |
|
| Q |
325 |
gatatatacaagaggtac |
342 |
Q |
| |
|
|| ||||||||||||||| |
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| T |
50394584 |
gacatatacaagaggtac |
50394601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 184; Significance: 4e-99; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 184; E-Value: 4e-99
Query Start/End: Original strand, 99 - 326
Target Start/End: Complemental strand, 41638089 - 41637862
Alignment:
| Q |
99 |
aattggattatattttcttaatgttagggtcgctggtcatttatatgacaaagaagctaagaggcaattgattgaaaaaggagtacaaagaaaattgggt |
198 |
Q |
| |
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| T |
41638089 |
aattggattatattttcttaatgttatggttactggtcatttatatgacaaagaagctaagaggcaattgattggaaaaggagaagaaagaaaattgggt |
41637990 |
T |
|
| Q |
199 |
caggaattgaattgtgtaggagcaagttgtttcagattgtctttcattattatcactgcagctactttgtttggtgccattatttcacttattttagtgg |
298 |
Q |
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|||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
41637989 |
caggaattgaattgtgcaggagcaagttgtttcaaattgtctttcattattatcactgtagctactttgtttggtgccattatttcacttattttagtgg |
41637890 |
T |
|
| Q |
299 |
ccagaacaattaagttttataaaggtga |
326 |
Q |
| |
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| ||||||||||||||||||||| |||| |
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| T |
41637889 |
ctagaacaattaagttttataaacgtga |
41637862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 212 - 348
Target Start/End: Complemental strand, 39628197 - 39628061
Alignment:
| Q |
212 |
gtgtaggagcaagttgtttcagattgtctttcattattatcactgcagctactttgtttggtgccattatttcacttattttagtggccagaacaattaa |
311 |
Q |
| |
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|||| |||||||||||||||| |||||||||||| |||||||||||||| |||||||||| |||||||||| | ||||| || | ||||||||||| |
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| T |
39628197 |
gtgtgggagcaagttgtttcaaattgtctttcatgtctatcactgcagctaacttgtttggtgtcattatttcagtaattttgttgactagaacaattaa |
39628098 |
T |
|
| Q |
312 |
gttttataaaggtgatatatacaagaggtaccgatca |
348 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||| |
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| T |
39628097 |
gttttataaacgtgatatatacaagaggtaccgatca |
39628061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 310 - 402
Target Start/End: Complemental strand, 41637847 - 41637755
Alignment:
| Q |
310 |
aagttttataaaggtgatatatacaagaggtaccgatcagagcaggttgaagttgaaggagctacggctgagatgacggtggtccaaaatgac |
402 |
Q |
| |
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|||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| ||| ||||||||||||||||||||||||| |
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| T |
41637847 |
aagttttataaacgtgatatatacaagaggtaccgatcagagcaggtagaagttgaaggagcttcggatgagatgacggtggtccaaaatgac |
41637755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 206 - 305
Target Start/End: Original strand, 41638119 - 41638221
Alignment:
| Q |
206 |
tgaattgtgtaggagcaagttgtttcagattgtctttcattattatca---ctgcagctactttgtttggtgccattatttcacttattttagtggccag |
302 |
Q |
| |
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|||||||||||||| || ||||||||| ||||||||||||||| |||| || |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41638119 |
tgaattgtgtaggaacacgttgtttcaaattgtctttcattatcatcatcactctggctactttgtttggtgccattatttcacttattttagtggccag |
41638218 |
T |
|
| Q |
303 |
aac |
305 |
Q |
| |
|
||| |
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| T |
41638219 |
aac |
41638221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 312 - 376
Target Start/End: Original strand, 41638631 - 41638695
Alignment:
| Q |
312 |
gttttataaaggtgatatatacaagaggtaccgatcagagcaggttgaagttgaaggagctacgg |
376 |
Q |
| |
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|||||||||| |||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |
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| T |
41638631 |
gttttataaacgtgatatatacaagaggtaccggtcagagcaggtagaagttgaaggagctacgg |
41638695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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