View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10583_10 (Length: 422)
Name: NF10583_10
Description: NF10583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10583_10 |
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| [»] scaffold0166 (2 HSPs) |
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Alignment Details
Target: scaffold0166 (Bit Score: 349; Significance: 0; HSPs: 2)
Name: scaffold0166
Description:
Target: scaffold0166; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 25 - 410
Target Start/End: Original strand, 32253 - 32638
Alignment:
| Q |
25 |
ttttccacaaaaccctaaaactcaatcaagaatggtttatgtaccaaaacgaacttggattcaccagaaaactaccaaaagtactcatcatcgtgttgga |
124 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
32253 |
ttttccacaaaaccctaaaactcaatcaagaatgatttatgtaccaaaacgaactcggattcagcagaaaactaccaaaagtactcatcatcgtgttgga |
32352 |
T |
|
| Q |
125 |
actgttattccatttccaaaaactattgaagaagctgaagcattacacattaccactgtaatgattcgaaacatccctaatcagtttaggtaattaacta |
224 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32353 |
actgttattccatttccaaaaactattgaagaagctgaagcattacacattaccactgtaatgattcgaaacatccctaatcagtttaggtaattaacta |
32452 |
T |
|
| Q |
225 |
ttcatctttttaaacactgattttatccctaatcaattcaatagtgtaatttcgatcttaattttgctttgnnnnnnntttcaggttcgataatttgttg |
324 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| |
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| T |
32453 |
ttcatctttttaaacactgattttatccctaatcaattcaatagtgtaatttcgatcttaattgtgctttgaaaaaaatttcaggttcgataatttgttg |
32552 |
T |
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| Q |
325 |
atgattcttgatgttcattgctttgaaatcaacaagattcttgatgatcctgcggattggtccaagtttgatttcgtttatttgcc |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32553 |
atgattcttgatgttcattgctttgaaatcaacaagattcttgatgatcctgcggattggtccaagtttgatttcgtttatttgcc |
32638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0166; HSP #2
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 44 - 361
Target Start/End: Complemental strand, 22594 - 22286
Alignment:
| Q |
44 |
actcaatcaagaatggtttatgtaccaaaacgaacttggattcaccagaaaactaccaaaagtactcatcatcgtgttggaactgttattccatttccaa |
143 |
Q |
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||||||||||| |||||||||| | ||||||||| |||||| |||||||||| ||||||||| |||||||||||| |||| ||| |||||||| | |
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| T |
22594 |
actcaatcaaggatggtttatgatcgcaaacgaactcagattcagcagaaaactagtaaaagtacttatcatcgtgttgaaacttctataccatttccga |
22495 |
T |
|
| Q |
144 |
aaactattgaagaagctgaagcattacacattaccactgtaatgattcgaaacatccctaatcagtttaggtaattaactattcatctttttaaacactg |
243 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
22494 |
aaacaattgaagaagctgaagcattacacattaccactgtaatgattcgaaatatccctaatcagtttaggtaattaactattcatctttttaaactgtg |
22395 |
T |
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| Q |
244 |
attttatccctaatcaattcaatagtgtaatttcgatcttaattttgctttgnnnnnnntttcaggttcgataatttgttgatgattcttgatgttcatt |
343 |
Q |
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|||||||||| | ||| ||||||| ||||| ||||||| |||| ||||||||| ||||||||||||| ||| ||||||| ||||| |
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| T |
22394 |
attttatccc-------gtttttagggtaattttgatctcaattttgttttg--aaaaatttcaggtttgataatttgttgaagatacttgatgatcatt |
22304 |
T |
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| Q |
344 |
gctttgaaatcaacaaga |
361 |
Q |
| |
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|||||||||||||||||| |
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| T |
22303 |
gctttgaaatcaacaaga |
22286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 349; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 25 - 410
Target Start/End: Original strand, 24789870 - 24790255
Alignment:
| Q |
25 |
ttttccacaaaaccctaaaactcaatcaagaatggtttatgtaccaaaacgaacttggattcaccagaaaactaccaaaagtactcatcatcgtgttgga |
124 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
24789870 |
ttttccacaaaaccctaaaactcaatcaagaatgatttatgtaccaaaacgaactcggattcagcagaaaactaccaaaagtactcatcatcgtgttgga |
24789969 |
T |
|
| Q |
125 |
actgttattccatttccaaaaactattgaagaagctgaagcattacacattaccactgtaatgattcgaaacatccctaatcagtttaggtaattaacta |
224 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24789970 |
actgttattccatttccaaaaactattgaagaagctgaagcattacacattaccactgtaatgattcgaaacatccctaatcagtttaggtaattaacta |
24790069 |
T |
|
| Q |
225 |
ttcatctttttaaacactgattttatccctaatcaattcaatagtgtaatttcgatcttaattttgctttgnnnnnnntttcaggttcgataatttgttg |
324 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| |
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| T |
24790070 |
ttcatctttttaaacactgattttatccctaatcaattcaatagtgtaatttcgatcttaattgtgctttgaaaaaaatttcaggttcgataatttgttg |
24790169 |
T |
|
| Q |
325 |
atgattcttgatgttcattgctttgaaatcaacaagattcttgatgatcctgcggattggtccaagtttgatttcgtttatttgcc |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24790170 |
atgattcttgatgttcattgctttgaaatcaacaagattcttgatgatcctgcggattggtccaagtttgatttcgtttatttgcc |
24790255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 44 - 361
Target Start/End: Complemental strand, 24780211 - 24779903
Alignment:
| Q |
44 |
actcaatcaagaatggtttatgtaccaaaacgaacttggattcaccagaaaactaccaaaagtactcatcatcgtgttggaactgttattccatttccaa |
143 |
Q |
| |
|
||||||||||| |||||||||| | ||||||||| |||||| |||||||||| ||||||||| |||||||||||| |||| ||| |||||||| | |
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| T |
24780211 |
actcaatcaaggatggtttatgatcgcaaacgaactcagattcagcagaaaactagtaaaagtacttatcatcgtgttgaaacttctataccatttccga |
24780112 |
T |
|
| Q |
144 |
aaactattgaagaagctgaagcattacacattaccactgtaatgattcgaaacatccctaatcagtttaggtaattaactattcatctttttaaacactg |
243 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
24780111 |
aaacaattgaagaagctgaagcattacacattaccactgtaatgattcgaaatatccctaatcagtttaggtaattaactattcatctttttaaactgtg |
24780012 |
T |
|
| Q |
244 |
attttatccctaatcaattcaatagtgtaatttcgatcttaattttgctttgnnnnnnntttcaggttcgataatttgttgatgattcttgatgttcatt |
343 |
Q |
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|||||||||| | ||| ||||||| ||||| ||||||| |||| ||||||||| ||||||||||||| ||| ||||||| ||||| |
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| T |
24780011 |
attttatccc-------gtttttagggtaattttgatctcaattttgttttg--aaaaatttcaggtttgataatttgttgaagatacttgatgatcatt |
24779921 |
T |
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| Q |
344 |
gctttgaaatcaacaaga |
361 |
Q |
| |
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|||||||||||||||||| |
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| T |
24779920 |
gctttgaaatcaacaaga |
24779903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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