View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10583_12 (Length: 382)
Name: NF10583_12
Description: NF10583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10583_12 |
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Alignment Details
Target: chr8 (Bit Score: 190; Significance: 1e-103; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 9 - 238
Target Start/End: Original strand, 35520028 - 35520257
Alignment:
| Q |
9 |
gagaagaagaagagtggtgatgatcattatagatggtataataaagaagctgatgcaaggggtgagggtttgatggtttgaggactctacggctgacgag |
108 |
Q |
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|||||||||| ||||| ||||||||||||||||||||||| || ||||||||||||||||| ||||||| |||||||||||||||| | ||||||||||| |
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| T |
35520028 |
gagaagaagaggagtgatgatgatcattatagatggtatagtagagaagctgatgcaagggatgagggtatgatggtttgaggactttgcggctgacgag |
35520127 |
T |
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| Q |
109 |
gtgacgccatgtgtcagctgaggagagtgaggacaatggcagtgacagcaacacttccttcaattcattggcttcggcagctgataaaccaacctttaca |
208 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35520128 |
gtggcgccatgtgtcagctgaggagagtgaggacaatggcagtgacagcaacacttccttcaattcattggcttcggcagctgataaaccaacctttaca |
35520227 |
T |
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| Q |
209 |
aaatcatcgatacccaactccattacactc |
238 |
Q |
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|||||||| ||||||||||||||||||||| |
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| T |
35520228 |
aaatcatcaatacccaactccattacactc |
35520257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 9 - 233
Target Start/End: Complemental strand, 35710858 - 35710634
Alignment:
| Q |
9 |
gagaagaagaagagtggtgatgatcattatagatggtataataaagaagctgatgcaaggggtgagggtttgatggtttgaggactctacggctgacgag |
108 |
Q |
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|||||||||| ||||| ||||||| |||||||||||||||||| ||||||||||||||||| ||||||| |||||||||||||||| | ||||||||||| |
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| T |
35710858 |
gagaagaagaggagtgatgatgatgattatagatggtataatagagaagctgatgcaagggatgagggtatgatggtttgaggactttgcggctgacgag |
35710759 |
T |
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| Q |
109 |
gtgacgccatgtgtcagctgaggagagtgaggacaatggcagtgacagcaacacttccttcaattcattggcttcggcagctgataaaccaacctttaca |
208 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | || |||||||||| | |||||| |
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| T |
35710758 |
gtggcgccatgtgtcagctgaggagagtgaggacaatggcagtgacagcaaaacttccttcaattcattggcttcagtaggtgataaaccagcttttaca |
35710659 |
T |
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| Q |
209 |
aaatcatcgatacccaactccatta |
233 |
Q |
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||||| |||| |||||||||||||| |
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| T |
35710658 |
aaatcgtcgacacccaactccatta |
35710634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 270 - 382
Target Start/End: Original strand, 35520289 - 35520401
Alignment:
| Q |
270 |
aacttcaaaattctaagcaaacatgaatacggtggtagttgtaggtgtagatgatgaggtggttggtgaatgggtgatgtgatagataacaaagcatggt |
369 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35520289 |
aacttcaaaattctaagcaaacatgaatacggtggtagttgcaggtgtagatgatgaggtggttggtgaatgggtgatgtgatagataacaaagcatggt |
35520388 |
T |
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| Q |
370 |
ggctagctactac |
382 |
Q |
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||||||||||||| |
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| T |
35520389 |
ggctagctactac |
35520401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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