View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10583_16 (Length: 359)
Name: NF10583_16
Description: NF10583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10583_16 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 175; Significance: 4e-94; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 1 - 179
Target Start/End: Complemental strand, 45545718 - 45545540
Alignment:
| Q |
1 |
tcttccacctcagaattctcattcaatgtcatttcataatcgtttgccacagttttgaaatttttgttagcaactttcaaagatccctttgaaatgtaat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45545718 |
tcttccacctcagaattctcattcaatgtcatttcataatcgtttaccacagttttgaaatttttgttagcaactttcaaagatccctttgaaatgtaat |
45545619 |
T |
|
| Q |
101 |
acacctttcccatagcaaatttgtcataaaacttccttgcagcatcattaaacatagttgcttgaatctgagtaccctg |
179 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45545618 |
acacctttcccatagcaaatttgtcataaaacttccttgcagcatcattaaacatagttgcttgaatctgagtaccctg |
45545540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 254 - 352
Target Start/End: Complemental strand, 45545457 - 45545359
Alignment:
| Q |
254 |
tcaaatatcctgttccttacatcttcatcggtcagttcaacattgaatacacaaccttctcctctagcattcttataggtacgcatagttcctttgctt |
352 |
Q |
| |
|
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45545457 |
tcaaatattctgttccttacatcttcatcagtcagttcaacattgaatacacaaccttctcctctagcattcttataggtacgcatagttcctttgctt |
45545359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University