View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10583_17 (Length: 358)
Name: NF10583_17
Description: NF10583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10583_17 |
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Alignment Details
Target: chr8 (Bit Score: 274; Significance: 1e-153; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 9 - 356
Target Start/End: Original strand, 31502157 - 31502504
Alignment:
| Q |
9 |
gagaagaaaaggtgattcaagtgttgaaagaagtgtgacacaatacaaattcttcacnnnnnnnnnnnnnnnnnntgtcaacaagttgatcacatctttg |
108 |
Q |
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| T |
31502157 |
gagaagaaaaggtgattcaagtgttgaaataagtgtgacacaatacaaattcttcacaaaaaagatgaaaaaaaatgttaacaagttgatcacatctttg |
31502256 |
T |
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| Q |
109 |
aagcaaatggatagtaaatttggcatgtcttcaaatttggaacttgatcaacacctttattctttgattagagtgtttaaagaagtcatagcaatgaatt |
208 |
Q |
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| T |
31502257 |
aagcaaatggatagtaaatttggcatgtcttcaattttggaacttgatcaacacctttattctttgattagagtgtttaaagaagtcatagcaatgaatt |
31502356 |
T |
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| Q |
209 |
tgtctatttttcaaatcattttgtcattcttgactatgtcttcatcaaagtcaaagacaaccaagtggaaatttgttgctaaaatgatgcacaaaggagt |
308 |
Q |
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| T |
31502357 |
tgtctatttttcaaatcattttgtcattcttgactatgtcttcatcaaagtcaaagacaaccaagtggaaatttgttgctaaaatgatgcacaaaggagt |
31502456 |
T |
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| Q |
309 |
cataacatgtgaagataactcagatcatgtcaatgagtttttgtgtgt |
356 |
Q |
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| T |
31502457 |
cataacatgtgaagataactcggataatgtcaatgagtttttgtgtgt |
31502504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 9 - 356
Target Start/End: Original strand, 31476793 - 31477140
Alignment:
| Q |
9 |
gagaagaaaaggtgattcaagtgttgaaagaagtgtgacacaatacaaattcttcacnnnnnnnnnnnnnnnnnntgtcaacaagttgatcacatctttg |
108 |
Q |
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| T |
31476793 |
gagaagaaaaggtgattcaagtgttgaaagaagtgtggcagaatacaaattcttcacaaaaaagatgaaaaaaaatgttaacaagttgatcacatctttg |
31476892 |
T |
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| Q |
109 |
aagcaaatggatagtaaatttggcatgtcttcaaatttggaacttgatcaacacctttattctttgattagagtgtttaaagaagtcatagcaatgaatt |
208 |
Q |
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| T |
31476893 |
aagcacatgaatagtaaatttggcatgtcttcaattttggaacttgatcatcacttttcttgtttgattagagtatttagggaagtcatagtaatgaact |
31476992 |
T |
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| Q |
209 |
tgtctatttttcaaatcattttgtcattcttgactatgtcttcatcaaagtcaaagacaaccaagtggaaatttgttgctaaaatgatgcacaaaggagt |
308 |
Q |
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| T |
31476993 |
tatctgtttttcaattcattttgtcatttttgaatgtgtcttcatcaaagtcaaagacagctaaatggaagtttgtggctaaactgatgcacaaaggggt |
31477092 |
T |
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| Q |
309 |
cataacatgtgaagataactcagatcatgtcaatgagtttttgtgtgt |
356 |
Q |
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| T |
31477093 |
tataacatgtgaagataactcatataatgtcaatgagtttttgtgtgt |
31477140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 9 - 347
Target Start/End: Original strand, 31466947 - 31467285
Alignment:
| Q |
9 |
gagaagaaaaggtgattcaagtgttgaaagaagtgtgacacaatacaaattcttcacnnnnnnnnnnnnnnnnnntgtcaacaagttgatcacatctttg |
108 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| | |||||||||| ||||| ||||| ||||||||||||| |||| |
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| T |
31466947 |
gagaagaaaaggtgattcaagtgttgaaagaagtgtggaagaatacaaatttttcacaaaactgatgaagaaaaatgtcaccaagttgatcacaagtttg |
31467046 |
T |
|
| Q |
109 |
aagcaaatggatagtaaatttggcatgtcttcaaatttggaacttgatcaacacctttattctttgattagagtgtttaaagaagtcatagcaatgaatt |
208 |
Q |
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| T |
31467047 |
aagcatatggatagtaaatttggggtgtcccaaattttagaacttgatcatcacctttgctctataattagagtgtttagggaagtgattacaatgaact |
31467146 |
T |
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| Q |
209 |
tgtctatttttcaaatcattttgtcattcttgactatgtcttcatcaaagtcaaagacaaccaagtggaaatttgttgctaaaatgatgcacaaaggagt |
308 |
Q |
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||||| |||||||| ||||||||||||| |||| | |||||||||||||||| ||| |||| || |||| || || | ||| | |||||||| || | |
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| T |
31467147 |
tgtctgtttttcaattcattttgtcatttttgaatgtgtcttcatcaaagtctaaggcaactaaatggatgttggtgacaaaactaatgcacaagggtgc |
31467246 |
T |
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| Q |
309 |
cataacatgtgaagataactcagatcatgtcaatgagtt |
347 |
Q |
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||||||| ||||||||||||||| || |||||||||| |
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| T |
31467247 |
tataacatttgaagataactcagaaaatatcaatgagtt |
31467285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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