View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10583_20 (Length: 340)
Name: NF10583_20
Description: NF10583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10583_20 |
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Alignment Details
Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 5 - 214
Target Start/End: Complemental strand, 113037 - 112829
Alignment:
| Q |
5 |
agcctgcacattaaaacaagtagtgattttttcgtctacaactccacagtttgggtaaaacatccaaattattttttatttctctatatgtaattttctt |
104 |
Q |
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| T |
113037 |
agcctgcacattaaa-caagtagtgattttttcgtctacaactccagagtttgggtaaaacatccaaattattttttatttctctatatgtaattttctt |
112939 |
T |
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| Q |
105 |
cttgagtaagcaagtatttcaaaatattcaatagttttcggggaatccaatttatttatcgtaaaactattatagatagatggtgtgtgatctcattgta |
204 |
Q |
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| T |
112938 |
cttgagtaagtaagtatttcaaaatattcaatagttttcgggaaatccaatttatttatcgtaaaactattatagatagatggtgtgtgatctcattgta |
112839 |
T |
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| Q |
205 |
tatacacaaa |
214 |
Q |
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| T |
112838 |
tatacacaaa |
112829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 247 - 340
Target Start/End: Complemental strand, 109931 - 109841
Alignment:
| Q |
247 |
gtgcttcactgttgttgacttgtttcgacaacattttccgccggcagcaccacctattattagtagtattcggttcctaaggatcttgtatatt |
340 |
Q |
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| T |
109931 |
gtgcttcactgttgttgacttgtttcgacaacattttccgccggcagcaccacct---attagtagtattcggttcctaaggatcttgtatatt |
109841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 201
Target Start/End: Complemental strand, 32754978 - 32754929
Alignment:
| Q |
152 |
caatttatttatcgtaaaactattatagatagatggtgtgtgatctcatt |
201 |
Q |
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| T |
32754978 |
caatttatttattgtaaaaccattataaatacaaggtgtgtgatctcatt |
32754929 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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