View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10583_21 (Length: 340)
Name: NF10583_21
Description: NF10583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10583_21 |
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Alignment Details
Target: chr8 (Bit Score: 173; Significance: 5e-93; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 132 - 328
Target Start/End: Complemental strand, 23122045 - 23121849
Alignment:
| Q |
132 |
aatggaatacatgtggtagaatactaatttatcaatttaattatttgtgttttcccttctcatgtctcggtttattgttatagatagataacaaatagta |
231 |
Q |
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| T |
23122045 |
aatggaatacatgtggtagaatactaatttatcaatttaattatttgtgttttcccttctcatgtctcggtttattgttatagatagataacaaatagta |
23121946 |
T |
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| Q |
232 |
gataattttttatatacccatttgctaacacttttcaataatcttatatcataccctatgcttctcctctgattcaaatttccatggtaataatatt |
328 |
Q |
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| T |
23121945 |
gataattttttatatacccatttgctaacacttttaaataatcttatatcataccctatgcttctaaaatggttcaaatttccatggtaataatatt |
23121849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 169; Significance: 1e-90; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 132 - 328
Target Start/End: Original strand, 22630532 - 22630728
Alignment:
| Q |
132 |
aatggaatacatgtggtagaatactaatttatcaatttaattatttgtgttttcccttctcatgtctcggtttattgttatagatagataacaaatagta |
231 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
22630532 |
aatggaatacatgtggtagaatactaatttatcaatttaattatttgtgttttcccttctcatgtctcggtttaatgttatagatagataacaaatagta |
22630631 |
T |
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| Q |
232 |
gataattttttatatacccatttgctaacacttttcaataatcttatatcataccctatgcttctcctctgattcaaatttccatggtaataatatt |
328 |
Q |
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| T |
22630632 |
gataattttttatatacccatttgctaacacttttaaataatcttatatcatactctatgcttctaaaatgattcaaatttccatggtaataatatt |
22630728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 122
Target Start/End: Complemental strand, 29647398 - 29647314
Alignment:
| Q |
38 |
atttttctccaaatattatcacccaaactgaaaacgtggacctctctagaagacaaaatgacgaccttataagttttagtagaat |
122 |
Q |
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| T |
29647398 |
atttttctccaaatattatcaccgaaacggaaaactttcacctcactagaacacaaaaccacggcattataagttctagttgaat |
29647314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 95
Target Start/End: Original strand, 29597898 - 29597955
Alignment:
| Q |
38 |
atttttctccaaatattatcacccaaactgaaaacgtggacctctctagaagacaaaa |
95 |
Q |
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||||||||||||||||||||||| |||| |||||| | ||||| |||||| |||||| |
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| T |
29597898 |
atttttctccaaatattatcaccgaaacggaaaactttcacctccctagaacacaaaa |
29597955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 12 - 72
Target Start/End: Original strand, 19326311 - 19326371
Alignment:
| Q |
12 |
catggtcaaatggtgttaagcttgagatttttctccaaatattatcacccaaactgaaaac |
72 |
Q |
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| T |
19326311 |
catggtcaaaaggaggaaagcttgaaatttttctccaaatattatcactcaaactgaaaac |
19326371 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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