View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10583_22 (Length: 307)
Name: NF10583_22
Description: NF10583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10583_22 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 231; Significance: 1e-127; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 25 - 307
Target Start/End: Original strand, 29711290 - 29711566
Alignment:
| Q |
25 |
aacctgtgtatctctcatcactcagatttacaccacaactatcttttcacaatactaacaacacatttataacagtactggaacaaataaacatacatat |
124 |
Q |
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| T |
29711290 |
aacctgtgtatctc--atcactcagatttacaccacaactatcttttcacaataataacaacacatttataacagtactggaacaaataaacatacatat |
29711387 |
T |
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| Q |
125 |
aatgtagtatttcacatatttctcagatgtttgtgagatttgcagtgtcatctatcgttgttgcatgaaatggtaacctcggtcgttatcagttatatcc |
224 |
Q |
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| T |
29711388 |
aatgtagtatttcacatatttctcagatgtttgtgagatttgcagtgtcatctatcgttgttgcatgaaatggtaacctcggtcattatcagttatatcc |
29711487 |
T |
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| Q |
225 |
ggtttcaaaaggttgtgtgaaattgttattatacctgtttttccaactagtttggcaaagtatgtattactctgactgatttg |
307 |
Q |
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| T |
29711488 |
ggtttcaaaagattgtgtgaaattgttattatacccgtttttccaa----tttggcaaagtatgtattactgtgacttatttg |
29711566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 157 - 265
Target Start/End: Complemental strand, 29697418 - 29697310
Alignment:
| Q |
157 |
gtgagatttgcagtgtcatctatcgttgttgcatgaaatggtaacctcggtcgttatcagttatatccggtttcaaaaggttgtgtgaaattgttattat |
256 |
Q |
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| T |
29697418 |
gtgagatttacagtgtcgtctattgttgtctcatgaaatggtaacctcgataatcaccgtttatatccggtttcaaaaggttgtgtgaaattgttattgt |
29697319 |
T |
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| Q |
257 |
acctgtttt |
265 |
Q |
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| T |
29697318 |
acccgtttt |
29697310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 93 - 242
Target Start/End: Complemental strand, 29689320 - 29689171
Alignment:
| Q |
93 |
ataacagtactggaacaaataaacatacata-taatgtagtatttcacatatttctcagatgtttgtgagatttgcagtgtcatctatcgttgttgcatg |
191 |
Q |
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||||||||| | |||||||||||| ||||| || || ||||||||||| |||| || ||| | ||||||||||||||||| ||||| ||||| |||| |
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| T |
29689320 |
ataacagtaatcaaacaaataaacaaacataatactg-agtatttcacaggtttcacatatgatagtgagatttgcagtgtcgtctattgttgtctcatg |
29689222 |
T |
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| Q |
192 |
aaatggtaacctcggtcgttatcagttatatccggtttcaaaaggttgtgt |
242 |
Q |
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| T |
29689221 |
aaatggtaacctcgataatcaccggttatatccggtttcaaaaggttgtgt |
29689171 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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