View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10583_5 (Length: 567)

Name: NF10583_5
Description: NF10583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10583_5
NF10583_5
[»] chr7 (1 HSPs)
chr7 (1-544)||(37982136-37982679)
[»] chr1 (5 HSPs)
chr1 (335-387)||(51387129-51387181)
chr1 (345-388)||(27840306-27840349)
chr1 (345-397)||(50293657-50293709)
chr1 (347-391)||(6923528-6923572)
chr1 (350-390)||(28947451-28947491)
[»] chr8 (7 HSPs)
chr8 (345-389)||(16367874-16367918)
chr8 (335-387)||(26960205-26960257)
chr8 (345-389)||(771644-771688)
chr8 (340-391)||(14840437-14840488)
chr8 (345-397)||(19970454-19970506)
chr8 (345-397)||(21022303-21022355)
chr8 (343-387)||(42308123-42308167)
[»] chr5 (3 HSPs)
chr5 (343-387)||(40951480-40951524)
chr5 (343-389)||(16349713-16349759)
chr5 (343-387)||(4082584-4082628)
[»] chr2 (2 HSPs)
chr2 (345-387)||(22136279-22136321)
chr2 (347-389)||(22142347-22142389)
[»] chr4 (4 HSPs)
chr4 (347-388)||(17558824-17558865)
chr4 (343-387)||(9199866-9199910)
chr4 (343-387)||(9201405-9201449)
chr4 (343-389)||(32225581-32225627)
[»] chr3 (4 HSPs)
chr3 (348-387)||(44708227-44708266)
chr3 (350-388)||(5561552-5561590)
chr3 (345-387)||(53693216-53693258)
chr3 (347-388)||(38507978-38508019)
[»] chr6 (1 HSPs)
chr6 (346-388)||(34007563-34007605)


Alignment Details
Target: chr7 (Bit Score: 480; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 1 - 544
Target Start/End: Original strand, 37982136 - 37982679
Alignment:
Q  1 ttataggacccatcagtcaatagatattctgatagtattttttatgacattgttagttctttgttttatgctcctatactgagtgtgtatgtttaatgtt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||    
T  37982136 ttataggacccatcagtcaatagatattctgatagtattttttatgacattgttagttctttgttttatgctccaatactgactgtgtatgtttaatgtt 37982235  T
Q  101 gctaagcacattttcaatcgtttcacaacgcatccgctgcttggtaatttgatagtatgttttatgacatggttaatgcattattatatgctcaattagt 200  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37982236 gctaagcacattttcaatcgtttcacaacgcatccgccgcttggtaatttgatagtatgttttatgacatggttaatgcattattatatgctcaattagt 37982335  T
Q  201 aactgcgtaaatttgatattactaagcgcatatccagcgtgttgaggatcaattaaaacaaatatcataaattcaaataactcaatcatagtactttatc 300  Q
    |||| |||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37982336 aactacgtaaatttgatattactaagcgcatattcagcgtgttgaggataaattaaaacaaatatcataaattcaaataactcaatcatagtactttatc 37982435  T
Q  301 atacaaacatgagattattatatatcccatcgacttacgttgttaactatatatgacccgtgcgacaacacgggtagacgatctagtttatacatattag 400  Q
    ||||||||||||||||| ||||||||||||||||||| |||||||| |||||||||||||||||||| |||||| |||||||||| |||||||||||| |    
T  37982436 atacaaacatgagattaatatatatcccatcgacttatgttgttaattatatatgacccgtgcgacagcacgggcagacgatctaatttatacatatttg 37982535  T
Q  401 tttaggactcacttgttgattcaataaactattgttgtgattctgctacaatgcctataacaacttcataaaacgaatgaacatggaatcggttttgtgc 500  Q
    |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  37982536 tttaggactcacttgttgattccataaactattgttgtgattctgccacaatgcctataacaacttcataaaacgaatgaacatggactcggttttgtgc 37982635  T
Q  501 tcacaaaaacccaaccaaacagaatgatagaggttttgttcagc 544  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  37982636 tcacaaaaacccaaccaaacagaatgatagaggttttgttcagc 37982679  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 335 - 387
Target Start/End: Complemental strand, 51387181 - 51387129
Alignment:
Q  335 ttacgttgttaactatatatgacccgtgcgacaacacgggtagacgatctagt 387  Q
    ||||||| |||||||||||||||||||||| || |||||||||||||||||||    
T  51387181 ttacgtttttaactatatatgacccgtgcggcagcacgggtagacgatctagt 51387129  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 345 - 388
Target Start/End: Complemental strand, 27840349 - 27840306
Alignment:
Q  345 aactatatatgacccgtgcgacaacacgggtagacgatctagtt 388  Q
    ||||||| ||||||||||||||| ||||||||||||||||||||    
T  27840349 aactataaatgacccgtgcgacagcacgggtagacgatctagtt 27840306  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 345 - 397
Target Start/End: Original strand, 50293657 - 50293709
Alignment:
Q  345 aactatatatgacccgtgcgacaacacgggtagacgatctagtttatacatat 397  Q
    |||||||||||||||||||| || || |||||||||||||||| |||| ||||    
T  50293657 aactatatatgacccgtgcggcagcatgggtagacgatctagtgtatatatat 50293709  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 347 - 391
Target Start/End: Original strand, 6923528 - 6923572
Alignment:
Q  347 ctatatatgacccgtgcgacaacacgggtagacgatctagtttat 391  Q
    |||||||||||||||||  |  |||||||||||||||||||||||    
T  6923528 ctatatatgacccgtgctgctgcacgggtagacgatctagtttat 6923572  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 350 - 390
Target Start/End: Complemental strand, 28947491 - 28947451
Alignment:
Q  350 tatatgacccgtgcgacaacacgggtagacgatctagttta 390  Q
    ||||||||||||||| || ||||||| ||||||||||||||    
T  28947491 tatatgacccgtgcggcagcacgggtggacgatctagttta 28947451  T

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Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 345 - 389
Target Start/End: Original strand, 16367874 - 16367918
Alignment:
Q  345 aactatatatgacccgtgcgacaacacgggtagacgatctagttt 389  Q
    |||||||||||||||||||| || |||||||||||||||||||||    
T  16367874 aactatatatgacccgtgcggcagcacgggtagacgatctagttt 16367918  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 335 - 387
Target Start/End: Original strand, 26960205 - 26960257
Alignment:
Q  335 ttacgttgttaactatatatgacccgtgcgacaacacgggtagacgatctagt 387  Q
    ||||||| |||||||||||||||||||||| || ||||| |||||||||||||    
T  26960205 ttacgtttttaactatatatgacccgtgcggcagcacggatagacgatctagt 26960257  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 345 - 389
Target Start/End: Original strand, 771644 - 771688
Alignment:
Q  345 aactatatatgacccgtgcgacaacacgggtagacgatctagttt 389  Q
    |||||||||||||||||||| || ||||||||||||| |||||||    
T  771644 aactatatatgacccgtgcggcagcacgggtagacgacctagttt 771688  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 340 - 391
Target Start/End: Original strand, 14840437 - 14840488
Alignment:
Q  340 ttgttaactatatatgacccgtgcgacaacacgggtagacgatctagtttat 391  Q
    |||| ||||||||||||||||||||| | ||||||| || ||||||||||||    
T  14840437 ttgtgaactatatatgacccgtgcgatagcacgggtggaagatctagtttat 14840488  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 345 - 397
Target Start/End: Original strand, 19970454 - 19970506
Alignment:
Q  345 aactatatatgacccgtgcgacaacacgggtagacgatctagtttatacatat 397  Q
    |||||||||||||||||||  |  ||||||||||||||||||| |||| ||||    
T  19970454 aactatatatgacccgtgctgccgcacgggtagacgatctagtatatatatat 19970506  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 345 - 397
Target Start/End: Complemental strand, 21022355 - 21022303
Alignment:
Q  345 aactatatatgacccgtgcgacaacacgggtagacgatctagtttatacatat 397  Q
    |||||||||||||||||||  |  ||||||||||||||||||| |||| ||||    
T  21022355 aactatatatgacccgtgctgccgcacgggtagacgatctagtatatatatat 21022303  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 343 - 387
Target Start/End: Complemental strand, 42308167 - 42308123
Alignment:
Q  343 ttaactatatatgacccgtgcgacaacacgggtagacgatctagt 387  Q
    |||||||||||||||||||||| || ||| ||| |||||||||||    
T  42308167 ttaactatatatgacccgtgcggcagcacaggtggacgatctagt 42308123  T

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Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 343 - 387
Target Start/End: Original strand, 40951480 - 40951524
Alignment:
Q  343 ttaactatatatgacccgtgcgacaacacgggtagacgatctagt 387  Q
    |||||||||||||||||||||| || |||||||||||||||||||    
T  40951480 ttaactatatatgacccgtgcggcagcacgggtagacgatctagt 40951524  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 343 - 389
Target Start/End: Complemental strand, 16349759 - 16349713
Alignment:
Q  343 ttaactatatatgacccgtgcgacaacacgggtagacgatctagttt 389  Q
    |||||||||||||||||||||| || ||||||| |||||||||||||    
T  16349759 ttaactatatatgacccgtgcggcagcacgggtggacgatctagttt 16349713  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 343 - 387
Target Start/End: Original strand, 4082584 - 4082628
Alignment:
Q  343 ttaactatatatgacccgtgcgacaacacgggtagacgatctagt 387  Q
    |||||||||||||||||||||| || ||||||| |||||||||||    
T  4082584 ttaactatatatgacccgtgcggcagcacgggtggacgatctagt 4082628  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 345 - 387
Target Start/End: Complemental strand, 22136321 - 22136279
Alignment:
Q  345 aactatatatgacccgtgcgacaacacgggtagacgatctagt 387  Q
    |||||||||||||||||||| |||||||||| |||||||||||    
T  22136321 aactatatatgacccgtgcggcaacacgggtggacgatctagt 22136279  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 347 - 389
Target Start/End: Complemental strand, 22142389 - 22142347
Alignment:
Q  347 ctatatatgacccgtgcgacaacacgggtagacgatctagttt 389  Q
    ||||| ||||||||||||||| ||||||||| |||||||||||    
T  22142389 ctataaatgacccgtgcgacagcacgggtaggcgatctagttt 22142347  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000008; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 347 - 388
Target Start/End: Complemental strand, 17558865 - 17558824
Alignment:
Q  347 ctatatatgacccgtgcgacaacacgggtagacgatctagtt 388  Q
    |||||||||||||||||| || ||||||||||||||||||||    
T  17558865 ctatatatgacccgtgcggcagcacgggtagacgatctagtt 17558824  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 343 - 387
Target Start/End: Complemental strand, 9199910 - 9199866
Alignment:
Q  343 ttaactatatatgacccgtgcgacaacacgggtagacgatctagt 387  Q
    |||||| ||||||||||||||| || |||||||||||||||||||    
T  9199910 ttaactgtatatgacccgtgcggcagcacgggtagacgatctagt 9199866  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 343 - 387
Target Start/End: Complemental strand, 9201449 - 9201405
Alignment:
Q  343 ttaactatatatgacccgtgcgacaacacgggtagacgatctagt 387  Q
    |||||| ||||||||||||||| || |||||||||||||||||||    
T  9201449 ttaactgtatatgacccgtgcggcagcacgggtagacgatctagt 9201405  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 343 - 389
Target Start/End: Complemental strand, 32225627 - 32225581
Alignment:
Q  343 ttaactatatatgacccgtgcgacaacacgggtagacgatctagttt 389  Q
    |||||||||||||||||||||| || ||| ||| |||||||||||||    
T  32225627 ttaactatatatgacccgtgcggcagcaccggtggacgatctagttt 32225581  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 348 - 387
Target Start/End: Complemental strand, 44708266 - 44708227
Alignment:
Q  348 tatatatgacccgtgcgacaacacgggtagacgatctagt 387  Q
    ||||||||||||||||| || |||||||||||||||||||    
T  44708266 tatatatgacccgtgcggcagcacgggtagacgatctagt 44708227  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 350 - 388
Target Start/End: Complemental strand, 5561590 - 5561552
Alignment:
Q  350 tatatgacccgtgcgacaacacgggtagacgatctagtt 388  Q
    ||||||||||||||| || ||||||||||||||||||||    
T  5561590 tatatgacccgtgcggcagcacgggtagacgatctagtt 5561552  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 345 - 387
Target Start/End: Original strand, 53693216 - 53693258
Alignment:
Q  345 aactatatatgacccgtgcgacaacacgggtagacgatctagt 387  Q
    |||||||||||||| ||||| || |||||||||||||||||||    
T  53693216 aactatatatgacctgtgcggcagcacgggtagacgatctagt 53693258  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 347 - 388
Target Start/End: Complemental strand, 38508019 - 38507978
Alignment:
Q  347 ctatatatgacccgtgcgacaacacgggtagacgatctagtt 388  Q
    ||||| ||||||||||||||| ||||||||| ||||||||||    
T  38508019 ctataaatgacccgtgcgacagcacgggtaggcgatctagtt 38507978  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 346 - 388
Target Start/End: Complemental strand, 34007605 - 34007563
Alignment:
Q  346 actatatatgacccgtgcgacaacacgggtagacgatctagtt 388  Q
    |||||||||||||||||||||| |||||||||  |||||||||    
T  34007605 actatatatgacccgtgcgacagcacgggtaggagatctagtt 34007563  T

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