View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10583_6 (Length: 503)
Name: NF10583_6
Description: NF10583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10583_6 |
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Alignment Details
Target: chr7 (Bit Score: 122; Significance: 2e-62; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 212 - 372
Target Start/End: Complemental strand, 32620846 - 32620685
Alignment:
| Q |
212 |
gtcttgagacgagacaaagtaacaagcatcatcaaaaacttacgtacaaaattgtgagatctaaagtttgaacacatgtgacggtgtttagcttaa-atc |
310 |
Q |
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| T |
32620846 |
gtcttgagacgagacaaagtaacgagcatcatctaaaacttatgtacaaaacggtgagatctaaagtttgaacacatgtgacggtgtttagcttaatatc |
32620747 |
T |
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| Q |
311 |
agcattgttagttgagttaaatcttccgaattacttgtctcggaggcactagttaagaaagt |
372 |
Q |
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| T |
32620746 |
agcattgttagttgagttagatcttccgaattatttgtctcggaagcactagttaagaaagt |
32620685 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 9 - 136
Target Start/End: Complemental strand, 32621049 - 32620922
Alignment:
| Q |
9 |
gagatgaaaattaaggggtttt--ggagaggtttggac-aagaatgaaagtagaaatatcttaagaacnnnnnnntggataggccacgtcgtctttcctg |
105 |
Q |
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| T |
32621049 |
gagatgaaaattaaggggattttcggagaggtttggaccaagaatgaaagtagaaatatcttaagaacagaaaaatggataggccacgtc---tttcctg |
32620953 |
T |
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| Q |
106 |
cacaatcacaatggctggacacaatagggga |
136 |
Q |
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| T |
32620952 |
cacaatcacaatggctggacacaatagggga |
32620922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 421 - 503
Target Start/End: Complemental strand, 32620634 - 32620549
Alignment:
| Q |
421 |
gttgaacacaccactttttaacaatttccattacaaaagttatgtattaatcttcttaacta---ttgtctcaggacactaatgag |
503 |
Q |
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| T |
32620634 |
gttgaacacgctactttttaacaatttccaatacaaaatttatgtattaatctccttaactattgttgtctcaggacactaatgag |
32620549 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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