View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10583_7 (Length: 493)

Name: NF10583_7
Description: NF10583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10583_7
NF10583_7
[»] chr2 (2 HSPs)
chr2 (51-492)||(3501188-3501629)
chr2 (51-388)||(3513516-3513846)
[»] chr4 (2 HSPs)
chr4 (51-307)||(2356930-2357188)
chr4 (53-307)||(2352244-2352498)


Alignment Details
Target: chr2 (Bit Score: 414; Significance: 0; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 51 - 492
Target Start/End: Original strand, 3501188 - 3501629
Alignment:
Q  51 tcaagtgagaggtgtgaatcaatctaagaaatgggaagatataatattaaccgtagatcaaagtaaacgatcaagattaaaattttcgattaaaaggaac 150  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||    
T  3501188 tcaagtgagaggtgtgaatcaatctaagaaatgggaggatataatattaaccatagatcaaaataaacgatcaagattaaaattttcgattaaaaggaac 3501287  T
Q  151 acaatcattgttcacgcatgtaatagagaaagttttagaaattaatcaattgaatcttcttgaactcgtccataaattctttaatgcaatgtaacctcca 250  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3501288 acaatcattgttcacgcatgtaatagagaaagttttagaaattaatcaattgaatcttcttgaactcgtccataaattctttaatgcaatgtaacctcca 3501387  T
Q  251 aaatatcccaatctagtcaattattttctattaaatctttcatcaactatccattatacaaactattatattttacgcctaactcaacctaaaaattggc 350  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3501388 aaatatcccaatctagtcaattattttctcttaaatctttcatcaactatccattatacaaactattatattttacgcctaactcaacctaaaaattggc 3501487  T
Q  351 ttgtaagacaagaattgcttgaatcttaaaaaactaccgaagcaatatatctctaatcaactttggaactcaacacaccctcttgtgcttaggattggac 450  Q
    ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3501488 ttgtaagacaagaattgcttgaatcttaaaaaaataccgaagctatatatctctaatcaactttggaactcaacacaccctcttgtgcttaggattggac 3501587  T
Q  451 atctaaagcatgtacattttgatcatgaacaaatgcaggtag 492  Q
    ||||||||||||||||||||||||||||||||| ||||||||    
T  3501588 atctaaagcatgtacattttgatcatgaacaaacgcaggtag 3501629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 168; E-Value: 8e-90
Query Start/End: Original strand, 51 - 388
Target Start/End: Original strand, 3513516 - 3513846
Alignment:
Q  51 tcaagtgagaggtgtgaatcaatctaagaaatgggaagatataatattaaccgtagatcaaagtaaacgatcaagattaaaattttcgatt-aaaaggaa 149  Q
    ||||||||||||||||| ||||| |||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| ||| ||||||||    
T  3513516 tcaagtgagaggtgtgagtcaatgtaagaaatgggaggatataatattaaccgtagatcaaaataaacgatcaagattaaaattttcaatttaaaaggaa 3513615  T
Q  150 cacaatcattgttcacgcatgtaatagagaaagttttagaaattaatcaattgaatcttcttgaactcgtccataaattctttaatgcaatgtaacctcc 249  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||  |||||| ||||| || ||||||||||||| ||||||||| | || |     
T  3513616 cacaatcattgttcacgcatgtaatagagaaagttttagaaattaatcaatcaaatcttattgaattcatccataaattcttaaatgcaatggagcccca 3513715  T
Q  250 aaaatatcccaatctagtcaattattttctattaaatctttcatcaactatccattatacaaactattatattttacgcctaactcaacctaaaa--att 347  Q
    ||| |||||||||||||||||| || ||        ||||     |||| || |||||||||||||||| ||||| |||||||||||||||||||  |||    
T  3513716 aaattatcccaatctagtcaatcatctt------gctctt-----aactctcgattatacaaactattagattttgcgcctaactcaacctaaaaagatt 3513804  T
Q  348 ggcttgtaagacaagaattgcttgaatcttaaa-aaactacc 388  Q
     ||||||||| |||||||||||||||||||||| ||||||||    
T  3513805 tgcttgtaaggcaagaattgcttgaatcttaaagaaactacc 3513846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 88; Significance: 4e-42; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 51 - 307
Target Start/End: Original strand, 2356930 - 2357188
Alignment:
Q  51 tcaagtgagaggtgtgaatcaatctaagaaatgggaagatataatattaaccgtagatcaaagtaaacgatcaagattaaaattttcgattaaaa-ggaa 149  Q
    |||||||||||| ||||  |||| ||| | |||||| ||||||||||||||||||||||||| ||||| ||||| |||| | ||||  | ||||| || |    
T  2356930 tcaagtgagaggcgtgagacaatgtaatacatgggaggatataatattaaccgtagatcaaaataaacaatcaacattacagttttaaactaaaaaggca 2357029  T
Q  150 cacaatcattgttcacgcatgtaatagagaaagttttagaaattaatcaattgaatcttcttgaactcgtccataaattctttaatgcaatgtaacctcc 249  Q
    ||  |||||||||||| |||||||| |||||||||| ||||||||||||||  |||||||||||| || |||| |||||||| |||| ||||  ||| ||    
T  2357030 catgatcattgttcacacatgtaattgagaaagtttaagaaattaatcaatcaaatcttcttgaattcatccacaaattcttaaatgtaatg-gaccccc 2357128  T
Q  250 aaaat-atcccaatctagtcaattatttt-ctattaaatctttcatcaactatccattat 307  Q
    ||||| ||| ||||||||||||||||||| || ||||||||| |||| |||||| |||||    
T  2357129 aaaatcatctcaatctagtcaattattttgctcttaaatcttgcatccactatcgattat 2357188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 53 - 307
Target Start/End: Complemental strand, 2352498 - 2352244
Alignment:
Q  53 aagtgagaggtgtgaatcaatctaagaaatgggaagatataatattaaccgtagatcaaagtaaacgatcaagattaaaattttcgattaaaa-ggaaca 151  Q
    |||||||||| ||||   ||| ||| |||||||| ||||||||||||||| ||||||||| ||||||||||| |||| | ||||| | ||||| || |||    
T  2352498 aagtgagaggcgtgagataatgtaataaatgggaggatataatattaaccttagatcaaa-taaacgatcaacattacagttttcaactaaaaaggcaca 2352400  T
Q  152 caatcattgttcacgcatgtaatagagaaagttttagaaattaatcaattgaatcttcttgaactcgtccataaattctttaatgcaatgtaacctccaa 251  Q
      |||||||||||| |||||||| | |||||||| ||||||||||||||  |||||||||||| || |||| |||||||| |||| |||| |||| | ||    
T  2352399 tgatcattgttcacacatgtaattgtgaaagtttgagaaattaatcaatcaaatcttcttgaattcatccacaaattcttaaatgtaatg-aaccccaaa 2352301  T
Q  252 aatatcccaatctagtcaattatttt-ctattaaatctttcatcaactatccattat 307  Q
    | |||| ||||||||| ||||||||| || ||||||||| |||| |||||| |||||    
T  2352300 attatctcaatctagttaattattttgctcttaaatcttgcatccactatcgattat 2352244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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