View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10583_8 (Length: 460)

Name: NF10583_8
Description: NF10583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10583_8
NF10583_8
[»] scaffold0363 (1 HSPs)
scaffold0363 (4-371)||(13412-13779)
[»] chr8 (10 HSPs)
chr8 (4-371)||(14405074-14405441)
chr8 (4-371)||(6309847-6310214)
chr8 (7-371)||(5607419-5607783)
chr8 (7-371)||(5627587-5627951)
chr8 (7-371)||(5550146-5550510)
chr8 (4-367)||(13165242-13165605)
chr8 (93-366)||(32633629-32633902)
chr8 (365-460)||(7554471-7554569)
chr8 (275-372)||(5571728-5571825)
chr8 (372-442)||(29526895-29526965)
[»] scaffold0181 (1 HSPs)
scaffold0181 (370-460)||(12776-12866)
[»] chr5 (1 HSPs)
chr5 (370-442)||(27528454-27528526)
[»] chr1 (1 HSPs)
chr1 (392-443)||(2091065-2091116)
[»] chr3 (1 HSPs)
chr3 (370-431)||(9706084-9706145)
[»] chr6 (1 HSPs)
chr6 (392-460)||(2853783-2853851)


Alignment Details
Target: scaffold0363 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: scaffold0363
Description:

Target: scaffold0363; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 4 - 371
Target Start/End: Original strand, 13412 - 13779
Alignment:
4 atgtccaagaatatatctttctctttatcatccaattcatcataactcaatctgaatatagaatcaatttcgttgtttgaannnnnnnncagtttagcta 103  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |        |||||||||||    
13412 atgtccaaaaatatatctttctctttatcatccaattcatcataactcaatctgaatatagaatcaatttcgttgtttggaatttttttcagtttagcta 13511  T
104 atgcacaatcccattctttttcatttttacaacgaagtaaagatcccaacactttcaaagctaaaggatttcctttggcataatcaattgctctttttga 203  Q
    ||||||| ||||||||  ||||| ||||||||||||||||||||||||| |||||||||||||| || ||||| ||||||||||||| ||||||||||||    
13512 atgcacagtcccattcaatttcacttttacaacgaagtaaagatcccaatactttcaaagctaacgggtttccgttggcataatcaactgctctttttga 13611  T
204 gagctccacatatccatccttaggtgagtctttgtcaaaagcattcatgctaaaaagcttaacggaattgcgggagttcatcttcttaacttcataaatt 303  Q
    |||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
13612 gagctccacatatccatccttaggcgagactttgtcaaaagcattcatgctaaaaagcttaacggaattgcgggagttcatcttcttaacttcataaatt 13711  T
304 ttgtcgattcctctgcttatcagcacatgcttatccctcgtagtcacgatgactgtgctaccagatcc 371  Q
    |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||    
13712 ttgtcgattcctccacttatcagcacatgcttatccctcgtagtcacgatgactgtgctaccagatcc 13779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 284; Significance: 1e-159; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 4 - 371
Target Start/End: Complemental strand, 14405441 - 14405074
Alignment:
4 atgtccaagaatatatctttctctttatcatccaattcatcataactcaatctgaatatagaatcaatttcgttgtttgaannnnnnnncagtttagcta 103  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |        |||||||||||    
14405441 atgtccaaaaatatatctttctctttatcatccaattcatcataactcaatctgaatatagaatcaatttcgttgtttggaatttttttcagtttagcta 14405342  T
104 atgcacaatcccattctttttcatttttacaacgaagtaaagatcccaacactttcaaagctaaaggatttcctttggcataatcaattgctctttttga 203  Q
    ||||||| ||||||||  ||||| ||||||||||||||||||||||||| |||||||||||||| || ||||| ||||||||||||| ||||||||||||    
14405341 atgcacagtcccattcaatttcacttttacaacgaagtaaagatcccaatactttcaaagctaacgggtttccgttggcataatcaactgctctttttga 14405242  T
204 gagctccacatatccatccttaggtgagtctttgtcaaaagcattcatgctaaaaagcttaacggaattgcgggagttcatcttcttaacttcataaatt 303  Q
    |||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
14405241 gagctccacatatccatccttaggcgagactttgtcaaaagcattcatgctaaaaagcttaacggaattgcgggagttcatcttcttaacttcataaatt 14405142  T
304 ttgtcgattcctctgcttatcagcacatgcttatccctcgtagtcacgatgactgtgctaccagatcc 371  Q
    |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||    
14405141 ttgtcgattcctccacttatcagcacatgcttatccctcgtagtcacgatgactgtgctaccagatcc 14405074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 4 - 371
Target Start/End: Original strand, 6309847 - 6310214
Alignment:
4 atgtccaagaatatatctttctctttatcatccaattcatcataactcaatctgaatatagaatcaatttcgttgtttgaannnnnnnncagtttagcta 103  Q
    ||||| || ||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||  |||||| |        ||||||||| |    
6309847 atgtctaaaaatatatctttctctttatcatccaattcattataactcaatctgaatataaaatcaatttcagtgtttggaatttctttcagtttagcca 6309946  T
104 atgcacaatcccattctttttcatttttacaacgaagtaaagatcccaacactttcaaagctaaaggatttcctttggcataatcaattgctctttttga 203  Q
     |||||||||||||||  ||||| |||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||    
6309947 gtgcacaatcccattcaatttcacttttacaacgaagtaatgatcccaatactttcaaagctaaaggatttcctttggcataatcaactgctctttttga 6310046  T
204 gagctccacatatccatccttaggtgagtctttgtcaaaagcattcatgctaaaaagcttaacggaattgcgggagttcatcttcttaacttcataaatt 303  Q
    |||||||||||||||||||||||||||| ||||  |||||||||||| ||| |||||||  | ||||||  |||| ||||||||||||||||||||||||    
6310047 gagctccacatatccatccttaggtgagacttttccaaaagcattcaagctgaaaagctggagggaattttgggaattcatcttcttaacttcataaatt 6310146  T
304 ttgtcgattcctctgcttatcagcacatgcttatccctcgtagtcacgatgactgtgctaccagatcc 371  Q
    || || || ||||  |||||||  |||||||||||||| || ||||| ||||||||||||||||||||    
6310147 ttttcaatccctccacttatcaagacatgcttatccctagtcgtcacaatgactgtgctaccagatcc 6310214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 7 - 371
Target Start/End: Original strand, 5607419 - 5607783
Alignment:
7 tccaagaatatatctttctctttatcatccaattcatcataactcaatctgaatatagaatcaatttcgttgtttgaannnnnnnncagtttagctaatg 106  Q
    ||||| ||||||| || |||| | | ||||||||||| | |||||| ||| |||||||||||||||||||||||||          ||||||| ||||||    
5607419 tccaaaaatatattttgctctgttttatccaattcattaaaactcattctaaatatagaatcaatttcgttgtttggcatttttttcagtttatctaatg 5607518  T
107 cacaatcccattctttttcatttttacaacgaagtaaagatcccaacactttcaaagctaaaggatttcctttggcataatcaattgctctttttgagag 206  Q
    |||||||||||||||||||| |||||||||||||||| |||||||| ||||||||||||||||| |||||| ||||||||||||||||||||||||||||    
5607519 cacaatcccattctttttcacttttacaacgaagtaatgatcccaatactttcaaagctaaagggtttcctctggcataatcaattgctctttttgagag 5607618  T
207 ctccacatatccatccttaggtgagtctttgtcaaaagcattcatgctaaaaagcttaacggaattgcgggagttcatcttcttaacttcataaattttg 306  Q
    ||||||||||||||||||||||||| |||||||||||||||||| ||||||||   | | |||||| |||||||||||||||||||||||||| ||| |     
5607619 ctccacatatccatccttaggtgagactttgtcaaaagcattcaagctaaaaattctgagggaatttcgggagttcatcttcttaacttcatatattgtc 5607718  T
307 tcgattcctctgcttatcagcacatgcttatccctcgtagtcacgatgactgtgctaccagatcc 371  Q
    |  |||||||  |||||||||||||| |||||||| |||||||| |||||||| |||||||||||    
5607719 ttaattcctccacttatcagcacatgtttatccctagtagtcacaatgactgtactaccagatcc 5607783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 7 - 371
Target Start/End: Complemental strand, 5627951 - 5627587
Alignment:
7 tccaagaatatatctttctctttatcatccaattcatcataactcaatctgaatatagaatcaatttcgttgtttgaannnnnnnncagtttagctaatg 106  Q
    ||||| ||||||| || |||| | | ||||||||||| | |||||| ||| |||||||||||||||||||||||||          ||||||| ||||||    
5627951 tccaaaaatatattttgctctgttttatccaattcattaaaactcattctaaatatagaatcaatttcgttgtttggcatttttttcagtttatctaatg 5627852  T
107 cacaatcccattctttttcatttttacaacgaagtaaagatcccaacactttcaaagctaaaggatttcctttggcataatcaattgctctttttgagag 206  Q
    |||||||||||||||||||| |||||||||||||||| |||||||| ||||||||||||||||| |||||| ||||||||||||||||||||||||||||    
5627851 cacaatcccattctttttcacttttacaacgaagtaatgatcccaatactttcaaagctaaagggtttcctctggcataatcaattgctctttttgagag 5627752  T
207 ctccacatatccatccttaggtgagtctttgtcaaaagcattcatgctaaaaagcttaacggaattgcgggagttcatcttcttaacttcataaattttg 306  Q
    ||||||||||||||||||||||||| |||||||||||||||||| ||||||||   | | |||||| |||||||||||||||||||||||||| ||| |     
5627751 ctccacatatccatccttaggtgagactttgtcaaaagcattcaagctaaaaattctgagggaatttcgggagttcatcttcttaacttcatatattgtc 5627652  T
307 tcgattcctctgcttatcagcacatgcttatccctcgtagtcacgatgactgtgctaccagatcc 371  Q
    |  |||||||  |||||||||||||| |||||||| |||||||| |||||||| |||||||||||    
5627651 ttaattcctccacttatcagcacatgtttatccctagtagtcacaatgactgtactaccagatcc 5627587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 7 - 371
Target Start/End: Complemental strand, 5550510 - 5550146
Alignment:
7 tccaagaatatatctttctctttatcatccaattcatcataactcaatctgaatatagaatcaatttcgttgtttgaannnnnnnncagtttagctaatg 106  Q
    ||||| ||||||| || |||| | | ||||||||||| | |||||||||||||||||||||||||||| |||||||          |||||||||| |||    
5550510 tccaaaaatatattttgctctgttttatccaattcattaaaactcaatctgaatatagaatcaatttcattgtttggtatttttctcagtttagctgatg 5550411  T
107 cacaatcccattctttttcatttttacaacgaagtaaagatcccaacactttcaaagctaaaggatttcctttggcataatcaattgctctttttgagag 206  Q
    |||||||||||||||||||||||||||||| |||||| |||||||| ||||  ||||||||||| |||||| ||||||||||||||||||||||||||||    
5550410 cacaatcccattctttttcatttttacaactaagtaatgatcccaatacttgtaaagctaaagggtttcctctggcataatcaattgctctttttgagag 5550311  T
207 ctccacatatccatccttaggtgagtctttgtcaaaagcattcatgctaaaaagcttaacggaattgcgggagttcatcttcttaacttcataaattttg 306  Q
    ||||||||||||||||||||||||| |||||| |||||||||||  | ||||||    | |||||| |||||||||||||||||||||||||| ||| |     
5550310 ctccacatatccatccttaggtgagactttgttaaaagcattcaaacaaaaaagtcggagggaatttcgggagttcatcttcttaacttcatatattgtc 5550211  T
307 tcgattcctctgcttatcagcacatgcttatccctcgtagtcacgatgactgtgctaccagatcc 371  Q
    |  |||||||  |||||||||||||| |||||||| |||||||| |||||||| |||||||||||    
5550210 ttaattcctccacttatcagcacatgtttatccctagtagtcacaatgactgtactaccagatcc 5550146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 4 - 367
Target Start/End: Complemental strand, 13165605 - 13165242
Alignment:
4 atgtccaagaatatatctttctctttatcatccaattcatcataactcaatctgaatatagaatcaatttcgttgtttgaannnnnnnncagtttagcta 103  Q
    |||||||| ||||||| ||||||||||||||||||||||| ||||||| |||| | |||   ||||||||||   || |||        ||||||||  |    
13165605 atgtccaaaaatatatttttctctttatcatccaattcattataactccatcttagtatcctatcaatttcggcattggaaattttctccagtttagaca 13165506  T
104 atgcacaatcccattctttttcatttttacaacgaagtaaagatcccaacactttcaaagctaaaggatttcctttggcataatcaattgctctttttga 203  Q
     |||||||| ||||||| ||||| |||| ||||||||| | |||||||| ||||||| |||||||||  | |||||||| |||||||| |||||||||||    
13165505 gtgcacaattccattctatttcacttttgcaacgaagtgatgatcccaaaactttcagagctaaagggatgcctttggcgtaatcaatcgctctttttga 13165406  T
204 gagctccacatatccatccttaggtgagtctttgtcaaaagcattcatgctaaaaagcttaacggaattgcgggagttcatcttcttaacttcataaatt 303  Q
    |||||||||| |||| ||||||||  || |  ||||||||||||||| ||  |||||||  | ||||||  |||||||||||||||||||||||||||||    
13165405 gagctccacaaatccctccttagggaagacagtgtcaaaagcattcaagcagaaaagctggagggaattttgggagttcatcttcttaacttcataaatt 13165306  T
304 ttgtcgattcctctgcttatcagcacatgcttatccctcgtagtcacgatgactgtgctaccag 367  Q
    |  || |||||||  ||||||||||||||||||||||| || ||||| ||||||||||||||||    
13165305 tcttcaattcctccacttatcagcacatgcttatccctagtcgtcacaatgactgtgctaccag 13165242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 93 - 366
Target Start/End: Complemental strand, 32633902 - 32633629
Alignment:
93 cagtttagctaatgcacaatcccattctttttcatttttacaacgaagtaaagatcccaacactttcaaagctaaaggatttcctttggcataatcaatt 192  Q
    |||||||||||||||||| | ||||||| ||||| |||| | || ||| || |||||||| ||||| | ||||||||| || |||||||| ||||||||     
32633902 cagtttagctaatgcacagttccattctatttcacttttgctacaaagaaatgatcccaaaacttttagagctaaagggttgcctttggcgtaatcaatc 32633803  T
193 gctctttttgagagctccacatatccatccttaggtgagtctttgtcaaaagcattcatgctaaaaagcttaacggaattgcgggagttcatcttcttaa 292  Q
     |||||| |||||||||||||||||| ||||||||| || |||||||||||||||| | ||| |||||||  | ||| || || |||||||| |  ||||    
32633802 actctttctgagagctccacatatccctccttaggtaagactttgtcaaaagcattgaagctgaaaagctggagggagtttcgagagttcatttctttaa 32633703  T
293 cttcataaattttgtcgattcctctgcttatcagcacatgcttatccctcgtagtcacgatgactgtgctacca 366  Q
    ||| || ||||||||| |||||||  || | |||||||||||||||||| || || || |||||| ||||||||    
32633702 cttgatgaattttgtcaattcctccactaaccagcacatgcttatcccttgtcgttacaatgactatgctacca 32633629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 365 - 460
Target Start/End: Original strand, 7554471 - 7554569
Alignment:
365 cagatccatacaagataaaagatgcagcca----cccgtcatgatagctgaacgcgaatgtaatgagacccgccttcaaccatcgaaaagataacatttt 460  Q
    |||| |||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||    
7554471 cagacccatacaagataaaagatgcagccaaccacccgtcatgatagctgaacgcgaatgtaatgaga-ccgccttcaaccaccgaaaagataacatttt 7554569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 275 - 372
Target Start/End: Complemental strand, 5571825 - 5571728
Alignment:
275 gggagttcatcttcttaacttcataaattttgtcgattcctctgcttatcagcacatgcttatccctcgtagtcacgatgactgtgctaccagatcca 372  Q
    |||||||||||||||||||||||||||||| ||| |||||||  |||||||||||||| |||||||| || ||||| |||||| ||||||||| ||||    
5571825 gggagttcatcttcttaacttcataaatttcgtcaattcctccacttatcagcacatgtttatccctagtcgtcacaatgactatgctaccaggtcca 5571728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 372 - 442
Target Start/End: Complemental strand, 29526965 - 29526895
Alignment:
372 atacaagataaaagatgcagccacccgtcatgatagctgaacgcgaatgtaatgagacccgccttcaacca 442  Q
    |||||||||||| |||||  ||||| ||||| |||||| || ||||| |||||||||||||||||||||||    
29526965 atacaagataaaggatgcctccaccagtcataatagctaaaagcgaaagtaatgagacccgccttcaacca 29526895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0181 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0181
Description:

Target: scaffold0181; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 370 - 460
Target Start/End: Original strand, 12776 - 12866
Alignment:
370 ccatacaagataaaagatgcagccacccgtcatgatagctgaacgcgaatgtaatgagacccgccttcaaccatcgaaaagataacatttt 460  Q
    |||||||||||||| |||||  ||| | |||||||||| |||||||||||||||| |||  | |||||||||| || ||||||| ||||||    
12776 ccatacaagataaatgatgcctccatcagtcatgatagttgaacgcgaatgtaataagattcaccttcaaccaccggaaagatagcatttt 12866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 370 - 442
Target Start/End: Original strand, 27528454 - 27528526
Alignment:
370 ccatacaagataaaagatgcagccacccgtcatgatagctgaacgcgaatgtaatgagacccgccttcaacca 442  Q
    |||||||||||||| ||  |  ||||| |||||||||||||||| |||| |||||||||  ||||||||||||    
27528454 ccatacaagataaaggagacctccaccagtcatgatagctgaacacgaaagtaatgagattcgccttcaacca 27528526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 392 - 443
Target Start/End: Complemental strand, 2091116 - 2091065
Alignment:
392 ccacccgtcatgatagctgaacgcgaatgtaatgagacccgccttcaaccat 443  Q
    ||||| |||||||||||||||| |||| |||||||||  |||||||||||||    
2091116 ccaccagtcatgatagctgaacacgaaagtaatgagattcgccttcaaccat 2091065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 370 - 431
Target Start/End: Original strand, 9706084 - 9706145
Alignment:
370 ccatacaagataaaagatgcagccacccgtcatgatagctgaacgcgaatgtaatgagaccc 431  Q
    ||||| |||||||| ||||  |||||| ||||||||||||||||| ||| ||||| ||||||    
9706084 ccatataagataaaggatgtcgccaccagtcatgatagctgaacgtgaaagtaatcagaccc 9706145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 392 - 460
Target Start/End: Complemental strand, 2853851 - 2853783
Alignment:
392 ccacccgtcatgatagctgaacgcgaatgtaatgagacccgccttcaaccatcgaaaagataacatttt 460  Q
    ||||| |||||||||| | || ||||| ||||||||| |||||||||||||    ||||||||||||||    
2853851 ccaccagtcatgatagttaaatgcgaaagtaatgagatccgccttcaaccactagaaagataacatttt 2853783  T

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