View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10583_9 (Length: 449)

Name: NF10583_9
Description: NF10583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10583_9
NF10583_9
[»] chr3 (4 HSPs)
chr3 (233-336)||(20693034-20693137)
chr3 (9-88)||(20692748-20692827)
chr3 (95-198)||(20692904-20693005)
chr3 (359-420)||(9706084-9706145)
[»] chr8 (2 HSPs)
chr8 (354-449)||(7554471-7554569)
chr8 (361-431)||(29526895-29526965)
[»] scaffold0181 (1 HSPs)
scaffold0181 (343-449)||(12760-12866)
[»] chr5 (1 HSPs)
chr5 (342-431)||(27528437-27528526)
[»] chr1 (1 HSPs)
chr1 (332-432)||(2091065-2091165)
[»] chr4 (1 HSPs)
chr4 (342-441)||(28943642-28943741)
[»] chr6 (1 HSPs)
chr6 (381-449)||(2853783-2853851)


Alignment Details
Target: chr3 (Bit Score: 100; Significance: 3e-49; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 233 - 336
Target Start/End: Original strand, 20693034 - 20693137
Alignment:
Q  233 aagagcaattagaaagcccaatctgaaaagcccaccacttccttcttcttcttccaaacagtttcctcttgcaatatcaaccgtccatcaccaactctga 332  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20693034 aagagcaattagaaagcccaatctgaaaagcccagcacttccttcttcttcttccaaacagtttcctcttgcaatatcaaccgtccatcaccaactctga 20693133  T
Q  333 aacc 336  Q
    ||||    
T  20693134 aacc 20693137  T

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Target: chr3; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 9 - 88
Target Start/End: Original strand, 20692748 - 20692827
Alignment:
Q  9 gagaagaatgctaaaacgttaggtttgtagttatcaaataacatttttatttttgttgcaataccttcatgagataactt 88  Q
    |||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |||||||||| ||||||||||    
T  20692748 gagaagaatgctaaaacgttagatttatagttatcaaataacatttttatttttgttgtaataccttcaggagataactt 20692827  T

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Target: chr3; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 95 - 198
Target Start/End: Original strand, 20692904 - 20693005
Alignment:
Q  95 aggtttttgtttctgttttggtataagacataatgctacgacaaatacaattaacgaaccacagtcaaccgtcgagtgagatgaacggtagttaactgct 194  Q
    ||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||  || ||  ||||||||||||||||||     
T  20692904 aggttgttatttctattttggtataagacataatgctacgacaaatacaattaacgaaccaaagtcaactgt--agagaagtgaacggtagttaactgcc 20693001  T
Q  195 gttg 198  Q
    ||||    
T  20693002 gttg 20693005  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 359 - 420
Target Start/End: Original strand, 9706084 - 9706145
Alignment:
Q  359 ccatacaagataaaagatgcagccacccgtcatgatagctgaacgcgaatgtaatgagaccc 420  Q
    ||||| |||||||| ||||  |||||| ||||||||||||||||| ||| ||||| ||||||    
T  9706084 ccatataagataaaggatgtcgccaccagtcatgatagctgaacgtgaaagtaatcagaccc 9706145  T

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Target: chr8 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 354 - 449
Target Start/End: Original strand, 7554471 - 7554569
Alignment:
Q  354 cagatccatacaagataaaagatgcagcca----cccgtcatgatagctgaacgcgaatgtaatgagacccgccttcaaccatcgaaaagataacatttt 449  Q
    |||| |||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||    
T  7554471 cagacccatacaagataaaagatgcagccaaccacccgtcatgatagctgaacgcgaatgtaatgaga-ccgccttcaaccaccgaaaagataacatttt 7554569  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 361 - 431
Target Start/End: Complemental strand, 29526965 - 29526895
Alignment:
Q  361 atacaagataaaagatgcagccacccgtcatgatagctgaacgcgaatgtaatgagacccgccttcaacca 431  Q
    |||||||||||| |||||  ||||| ||||| |||||| || ||||| |||||||||||||||||||||||    
T  29526965 atacaagataaaggatgcctccaccagtcataatagctaaaagcgaaagtaatgagacccgccttcaacca 29526895  T

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Target: scaffold0181 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0181
Description:

Target: scaffold0181; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 343 - 449
Target Start/End: Original strand, 12760 - 12866
Alignment:
Q  343 aattacaacatcagatccatacaagataaaagatgcagccacccgtcatgatagctgaacgcgaatgtaatgagacccgccttcaaccatcgaaaagata 442  Q
    ||||||||||| ||| |||||||||||||| |||||  ||| | |||||||||| |||||||||||||||| |||  | |||||||||| || |||||||    
T  12760 aattacaacattagacccatacaagataaatgatgcctccatcagtcatgatagttgaacgcgaatgtaataagattcaccttcaaccaccggaaagata 12859  T
Q  443 acatttt 449  Q
     ||||||    
T  12860 gcatttt 12866  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 342 - 431
Target Start/End: Original strand, 27528437 - 27528526
Alignment:
Q  342 aaattacaacatcagatccatacaagataaaagatgcagccacccgtcatgatagctgaacgcgaatgtaatgagacccgccttcaacca 431  Q
    |||||||| ||| ||| |||||||||||||| ||  |  ||||| |||||||||||||||| |||| |||||||||  ||||||||||||    
T  27528437 aaattacagcattagacccatacaagataaaggagacctccaccagtcatgatagctgaacacgaaagtaatgagattcgccttcaacca 27528526  T

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Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 332 - 432
Target Start/End: Complemental strand, 2091165 - 2091065
Alignment:
Q  332 aaaccaacaaaaattacaacatcagatccatacaagataaaagatgcagccacccgtcatgatagctgaacgcgaatgtaatgagacccgccttcaacca 431  Q
    |||| |||| |||||||||||| ||| || |||||||||||  |  |  ||||| |||||||||||||||| |||| |||||||||  ||||||||||||    
T  2091165 aaacaaacataaattacaacattagacccgtacaagataaagaagacctccaccagtcatgatagctgaacacgaaagtaatgagattcgccttcaacca 2091066  T
Q  432 t 432  Q
    |    
T  2091065 t 2091065  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 342 - 441
Target Start/End: Complemental strand, 28943741 - 28943642
Alignment:
Q  342 aaattacaacatcagatccatacaagataaaagatgcagccacccgtcatgatagctgaacgcgaatgtaatgagacccgccttcaaccatcgaaaagat 441  Q
    |||||||| ||| ||| |||||||||||||| ||  |  |||||  ||||||||||||||| |||| |||| ||||  |||||||||||| || ||||||    
T  28943741 aaattacagcattagacccatacaagataaaggagacctccaccaatcatgatagctgaacacgaaggtaaggagattcgccttcaaccaccggaaagat 28943642  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 381 - 449
Target Start/End: Complemental strand, 2853851 - 2853783
Alignment:
Q  381 ccacccgtcatgatagctgaacgcgaatgtaatgagacccgccttcaaccatcgaaaagataacatttt 449  Q
    ||||| |||||||||| | || ||||| ||||||||| |||||||||||||    ||||||||||||||    
T  2853851 ccaccagtcatgatagttaaatgcgaaagtaatgagatccgccttcaaccactagaaagataacatttt 2853783  T

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