View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10583_low_1 (Length: 463)

Name: NF10583_low_1
Description: NF10583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10583_low_1
NF10583_low_1
[»] chr5 (15 HSPs)
chr5 (19-456)||(1043774-1044211)
chr5 (31-450)||(1033388-1033812)
chr5 (19-246)||(1071326-1071553)
chr5 (19-247)||(1065598-1065826)
chr5 (19-247)||(1640732-1640960)
chr5 (31-250)||(1058503-1058722)
chr5 (45-251)||(1053237-1053443)
chr5 (41-236)||(1046577-1046772)
chr5 (379-450)||(1065386-1065457)
chr5 (385-446)||(1046330-1046391)
chr5 (385-446)||(1052990-1053051)
chr5 (379-450)||(1071125-1071196)
chr5 (385-450)||(1058322-1058387)
chr5 (186-266)||(1041528-1041607)
chr5 (385-447)||(1641080-1641142)
[»] chr3 (3 HSPs)
chr3 (58-315)||(44171262-44171521)
chr3 (58-315)||(44191558-44191817)
chr3 (48-132)||(54102841-54102925)


Alignment Details
Target: chr5 (Bit Score: 422; Significance: 0; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 19 - 456
Target Start/End: Complemental strand, 1044211 - 1043774
Alignment:
Q  19 ggagtctccgctttctgcatattctgcaaaaggtgatagtctaattccaactttatctgctcctatctcattcacaactgcttcaacaacttccagagga 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  1044211 ggagtctccgctttctgcatattctgcaaaaggtgatagtctaattccaactttatctgctcctatctcattcacaactgcttcaacaacttccaaagga 1044112  T
Q  119 aatcgacaacgattctcgagggatccaccgtattcatctgttctgtcattcactttatctttcatgaattgttcaagtaggtagccatgagctccatgga 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1044111 aatcgacaacgattctcgagggatccaccgtattcatctgttctgtcattcactttatctttcatgaattgttcaagtaggtagccatgagctccatgga 1044012  T
Q  219 tttcaactccatcaaaaccttcaatttgcaccacattgattatgttaggagatttaaaaaatgtccttgtgctttaaagcaacaaatagtcatgtttctg 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  1044011 tttcaactccatcaaaaccttcaatttgcaccacattgattatgttaggagatttgaaaaatgtccttgtgctttaaagcaacaaatagtcatgtttctg 1043912  T
Q  319 aaaaaatatcaatattgtactatggtatttttcaattttagacaaaatttgtaaaaacctgtaaacttaccagcttcaatagcatttcttgcagcaagtc 418  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1043911 aaaaaatatcaatattgtactatggcatttttcaattttagacaaaatttgtaaaaacctgtaaacttaccagcttcaatagcatttcttgcagcaagtc 1043812  T
Q  419 tgaaatcattgacaatatgaggaatttcatctctgctt 456  Q
    |||||||||||||||||||||||||||||||| |||||    
T  1043811 tgaaatcattgacaatatgaggaatttcatctgtgctt 1043774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 31 - 450
Target Start/End: Complemental strand, 1033812 - 1033388
Alignment:
Q  31 ttctgcatattctgcaaaaggtgatagtctaattccaactttatctgctcctatctcattcacaactgcttcaacaacttccagaggaaatcgacaacga 130  Q
    ||||| || ||| ||||||||||||| ||||||||||||| | ||||||||||||||||||||||| || |||||||||||||  | |||||||||||||    
T  1033812 ttctgaatgttccgcaaaaggtgataatctaattccaactctttctgctcctatctcattcacaacagcgtcaacaacttccaatgcaaatcgacaacga 1033713  T
Q  131 ttctcgagggatccaccgtattcatctgttctgtcattcactttatctttcatgaattgttcaagtaggtagccatgagctccatggatttcaactccat 230  Q
    ||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| ||||    
T  1033712 ttctcaagggatccaccatattcatctgttctatcattcactttatctttcatgaattgttcaagtaggtagccatgagctccatgaagttcaacaccat 1033613  T
Q  231 caaaaccttcaatttgcaccacattgattatgttaggagatttaaaaaatgtcc--ttgtgctttaaagcaacaaatagtcatgtttctgaaaaaatatc 328  Q
    |||||||| ||||||||| ||||||||  |||||||  |||||  |||||||||   ||  |||||||||||||||||||| |||||||| |||||||||    
T  1033612 caaaacctgcaatttgcatcacattgagcatgttagttgattttcaaaatgtcccactgccctttaaagcaacaaatagtcctgtttctg-aaaaatatc 1033514  T
Q  329 aatattgtactatggt------atttttcaattttagacaaaatttgtaaaaacctgtaaacttaccagcttcaatagcatttcttgcagcaagtctgaa 422  Q
    |||||||||||||| |      |  ||||   ||| ||  ||||||||| | | |   ||||||||||||||||||||||||||||||||| ||||||||    
T  1033513 aatattgtactatgattgaatcacatttc--gtttggaataaatttgtacagatccacaaacttaccagcttcaatagcatttcttgcagcgagtctgaa 1033416  T
Q  423 atcattgacaatatgaggaatttcatct 450  Q
     ||||| ||||||| |||||||||||||    
T  1033415 gtcatttacaatattaggaatttcatct 1033388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 19 - 246
Target Start/End: Complemental strand, 1071553 - 1071326
Alignment:
Q  19 ggagtctccgctttctgcatattctgcaaaaggtgatagtctaattccaactttatctgctcctatctcattcacaactgcttcaacaacttccagagga 118  Q
    ||||||||| | ||||| ||| |||||||||||||||| ||| ||||||||| | |||| ||||||||||||  |||| |||||||||||||||| || |    
T  1071553 ggagtctccacattctgaatactctgcaaaaggtgataatcttattccaactctttctgttcctatctcatttgcaacagcttcaacaacttccaaagca 1071454  T
Q  119 aatcgacaacgattctcgagggatccaccgtattcatctgttctgtcattcactttatctttcatgaattgttcaagtaggtagccatgagctccatgga 218  Q
    || |||||||| ||||| ||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  1071453 aaccgacaacggttctcaagggatccaccatactcatctgtcctgtcattcactttatctttcatgaattgttcaaggaggtagccatgagctccatgga 1071354  T
Q  219 tttcaactccatcaaaaccttcaatttg 246  Q
    ||||||| |||||||| ||| |||||||    
T  1071353 tttcaaccccatcaaatcctgcaatttg 1071326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 19 - 247
Target Start/End: Complemental strand, 1065826 - 1065598
Alignment:
Q  19 ggagtctccgctttctgcatattctgcaaaaggtgatagtctaattccaactttatctgctcctatctcattcacaactgcttcaacaacttccagagga 118  Q
    ||||||||| | ||||||||| || ||||||||||||| ||| ||||||||| | |||||||||||||||||  |||| |||||||||||||||| || |    
T  1065826 ggagtctccacattctgcatactccgcaaaaggtgataatcttattccaactctttctgctcctatctcatttgcaacagcttcaacaacttccaaagca 1065727  T
Q  119 aatcgacaacgattctcgagggatccaccgtattcatctgttctgtcattcactttatctttcatgaattgttcaagtaggtagccatgagctccatgga 218  Q
    |||||||| || ||||| || || ||||| ||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||    
T  1065726 aatcgacagcggttctccagagacccaccatattcatctgtcctgtcattcactttatctttcatgaattgctcaaggaggtagccatgagctccatgga 1065627  T
Q  219 tttcaactccatcaaaaccttcaatttgc 247  Q
    ||||||| |||||||| ||| ||||||||    
T  1065626 tttcaaccccatcaaatcctgcaatttgc 1065598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 19 - 247
Target Start/End: Original strand, 1640732 - 1640960
Alignment:
Q  19 ggagtctccgctttctgcatattctgcaaaaggtgatagtctaattccaactttatctgctcctatctcattcacaactgcttcaacaacttccagagga 118  Q
    ||||||||| | |||| |||||||||| ||||| |||| ||||||||||||| | ||||| |||||||||||||||||||||||||||| ||||| ||      
T  1640732 ggagtctccacattctccatattctgcgaaaggcgataatctaattccaactctttctgcacctatctcattcacaactgcttcaacaatttccaaagcg 1640831  T
Q  119 aatcgacaacgattctcgagggatccaccgtattcatctgttctgtcattcactttatctttcatgaattgttcaagtaggtagccatgagctccatgga 218  Q
    ||||||||||| || || |||| ||||||||||| ||| |||| ||||||||||||||||||||| ||||| ||||||||||| || ||||| |||||||    
T  1640832 aatcgacaacggttttcaagggttccaccgtatttatcagttcggtcattcactttatctttcataaattgctcaagtaggtaaccgtgagccccatgga 1640931  T
Q  219 tttcaactccatcaaaaccttcaatttgc 247  Q
    | |||||||||||||||||| ||||||||    
T  1640932 tctcaactccatcaaaacctgcaatttgc 1640960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 31 - 250
Target Start/End: Complemental strand, 1058722 - 1058503
Alignment:
Q  31 ttctgcatattctgcaaaaggtgatagtctaattccaactttatctgctcctatctcattcacaactgcttcaacaacttccagaggaaatcgacaacga 130  Q
    |||||||||||||| ||||||||||| ||||||||||  | ||||||| |||||||||||  |||| |||||||||||||||| |  ||  ||||||||     
T  1058722 ttctgcatattctgaaaaaggtgataatctaattccagttctatctgcacctatctcatttgcaacagcttcaacaacttccaaaacaatccgacaacgg 1058623  T
Q  131 ttctcgagggatccaccgtattcatctgttctgtcattcactttatctttcatgaattgttcaagtaggtagccatgagctccatggatttcaactccat 230  Q
    ||||| ||||||||||| ||||||||||||||||| ||||||| ||||||||||||||| ||||||| |||||||| ||| |||||||||||||| ||||    
T  1058622 ttctcaagggatccaccatattcatctgttctgtcgttcacttgatctttcatgaattgctcaagtatgtagccattagccccatggatttcaaccccat 1058523  T
Q  231 caaaaccttcaatttgcacc 250  Q
    |||| ||| |||||||||||    
T  1058522 caaaccctgcaatttgcacc 1058503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 45 - 251
Target Start/End: Complemental strand, 1053443 - 1053237
Alignment:
Q  45 caaaaggtgatagtctaattccaactttatctgctcctatctcattcacaactgcttcaacaacttccagaggaaatcgacaacgattctcgagggatcc 144  Q
    |||||||||||| | | ||||||||| | ||||| |||||||||||  |||| |||||||||| ||||| |  ||||| ||||||||| || |||| |||    
T  1053443 caaaaggtgataattttattccaactctttctgcacctatctcatttgcaacagcttcaacaatttccaaaacaaatctacaacgattttcaagggttcc 1053344  T
Q  145 accgtattcatctgttctgtcattcactttatctttcatgaattgttcaagtaggtagccatgagctccatggatttcaactccatcaaaaccttcaatt 244  Q
    ||| ||||||||||||||||| ||  |||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| |||||    
T  1053343 accatattcatctgttctgtcgtttgctttatctttcatgaattgttcaactaggtagccatgagctccatggatttcaaccccatcaaaacctacaatt 1053244  T
Q  245 tgcacca 251  Q
    |||||||    
T  1053243 tgcacca 1053237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 41 - 236
Target Start/End: Complemental strand, 1046772 - 1046577
Alignment:
Q  41 tctgcaaaaggtgatagtctaattccaactttatctgctcctatctcattcacaactgcttcaacaacttccagaggaaatcgacaacgattctcgaggg 140  Q
    |||| ||||||||||||| | ||||||||| | || || || |||||||| ||||| |||||||||| ||||| |  ||||  |||||| || || || |    
T  1046772 tctgaaaaaggtgatagttttattccaactctttcggcaccaatctcatttacaacagcttcaacaatttccaaaacaaatttacaacggttttcaagag 1046673  T
Q  141 atccaccgtattcatctgttctgtcattcactttatctttcatgaattgttcaagtaggtagccatgagctccatggatttcaactccatcaaaac 236  Q
     |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||  ||| ||| | |||||||| ||||||||||    
T  1046672 ttccaccatattcatctgttctgtcattcactttatctttcatgaattgctcaagtaggtatccagtagccccacgaatttcaaccccatcaaaac 1046577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 379 - 450
Target Start/End: Complemental strand, 1065457 - 1065386
Alignment:
Q  379 gtaaacttaccagcttcaatagcatttcttgcagcaagtctgaaatcattgacaatatgaggaatttcatct 450  Q
    ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| | |||||||||||||    
T  1065457 gtaaagttaccagcttcaatagcatttcttgcagcaagtctgaagtcattgacaatgttaggaatttcatct 1065386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 385 - 446
Target Start/End: Complemental strand, 1046391 - 1046330
Alignment:
Q  385 ttaccagcttcaatagcatttcttgcagcaagtctgaaatcattgacaatatgaggaatttc 446  Q
    ||||||||||||||||||||||||||||||||||| || ||||||||||||| |||||||||    
T  1046391 ttaccagcttcaatagcatttcttgcagcaagtctaaagtcattgacaatattaggaatttc 1046330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 385 - 446
Target Start/End: Complemental strand, 1053051 - 1052990
Alignment:
Q  385 ttaccagcttcaatagcatttcttgcagcaagtctgaaatcattgacaatatgaggaatttc 446  Q
    ||||||||||||||||||||||||||||||||||| || ||||||||||||| |||||||||    
T  1053051 ttaccagcttcaatagcatttcttgcagcaagtctaaagtcattgacaatattaggaatttc 1052990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 379 - 450
Target Start/End: Complemental strand, 1071196 - 1071125
Alignment:
Q  379 gtaaacttaccagcttcaatagcatttcttgcagcaagtctgaaatcattgacaatatgaggaatttcatct 450  Q
    ||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||| |  ||||||||||||    
T  1071196 gtaaagttaccagcttcaatagcatttcttgcagcgagtctgaagtcattgacaatgtttggaatttcatct 1071125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 385 - 450
Target Start/End: Complemental strand, 1058387 - 1058322
Alignment:
Q  385 ttaccagcttcaatagcatttcttgcagcaagtctgaaatcattgacaatatgaggaatttcatct 450  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||  |  ||||||||||||    
T  1058387 ttaccagcttcaatagcatttcttgcagcaagtctgaagtcattgacaaggtttggaatttcatct 1058322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 186 - 266
Target Start/End: Complemental strand, 1041607 - 1041528
Alignment:
Q  186 attgttcaagtaggtagccatgagctccatggatttcaactccatcaaaaccttcaatttgcaccacattgattatgttag 266  Q
    |||| ||||||||||||||||||| | ||||||||||| | ||||||||||||  |||||||||||||||||  |||||||    
T  1041607 attgctcaagtaggtagccatgagttgcatggatttcatc-ccatcaaaacctgaaatttgcaccacattgagcatgttag 1041528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 385 - 447
Target Start/End: Original strand, 1641080 - 1641142
Alignment:
Q  385 ttaccagcttcaatagcatttcttgcagcaagtctgaaatcattgacaatatgaggaatttca 447  Q
    ||||||||| | |||||||| ||||||||||||||||| |||||||| ||| |||||||||||    
T  1641080 ttaccagctgctatagcattccttgcagcaagtctgaagtcattgacgatacgaggaatttca 1641142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 129; Significance: 1e-66; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 58 - 315
Target Start/End: Original strand, 44171262 - 44171521
Alignment:
Q  58 tctaattccaactttatctgctcctatctcattcacaactgcttcaacaacttccagaggaaatcgacaacgattctcgagggatccaccgtattcatct 157  Q
    ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||    ||| | ||| || ||||| ||||||||||| |||||||||    
T  44171262 tctaattccaactttttctgctcctatctcattcacaacagcttcaacaacttccaatccaaaccaacatcggttctctagggatccaccatattcatct 44171361  T
Q  158 gttctgtcattcactttatctttcatgaattgttcaagtaggtagccatgagctccatggatttcaactccatcaaaaccttcaatttgcaccacattga 257  Q
    ||| || ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||| ||||||||| ||||||||    
T  44171362 gttttgccattcactttatccttcatgaattgttcaagtaggtagccatgagctccatgaatttccacaccatcaaaacctgcaatttgcatcacattga 44171461  T
Q  258 ttatgttaggagatttaaaaaatgtcc--ttgtgctttaaagcaacaaatagtcatgttt 315  Q
      ||||||   |||||  |||||||||   ||  ||||||||||||||||||||||||||    
T  44171462 gcatgttacttgattttcaaaatgtcccactgccctttaaagcaacaaatagtcatgttt 44171521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 58 - 315
Target Start/End: Original strand, 44191558 - 44191817
Alignment:
Q  58 tctaattccaactttatctgctcctatctcattcacaactgcttcaacaacttccagaggaaatcgacaacgattctcgagggatccaccgtattcatct 157  Q
    ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||    ||| | ||| || ||||| ||||||||||| |||||||||    
T  44191558 tctaattccaactttttctgctcctatctcattcacaacagcttcaacaacttccaatccaaaccaacatcggttctctagggatccaccatattcatct 44191657  T
Q  158 gttctgtcattcactttatctttcatgaattgttcaagtaggtagccatgagctccatggatttcaactccatcaaaaccttcaatttgcaccacattga 257  Q
    ||| || ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||| ||||||||| ||||||||    
T  44191658 gttttgccattcactttatccttcatgaattgttcaagtaggtagccatgagctccatgaatttccacaccatcaaaacctgcaatttgcatcacattga 44191757  T
Q  258 ttatgttaggagatttaaaaaatgtcc--ttgtgctttaaagcaacaaatagtcatgttt 315  Q
      ||||||   |||||  |||||||||   ||  ||||||||||||||||||||||||||    
T  44191758 gcatgttacttgattttcaaaatgtcccactgccctttaaagcaacaaatagtcatgttt 44191817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 48 - 132
Target Start/End: Original strand, 54102841 - 54102925
Alignment:
Q  48 aaggtgatagtctaattccaactttatctgctcctatctcattcacaactgcttcaacaacttccagaggaaatcgacaacgatt 132  Q
    ||||||| |||||||  |||||||| || ||||| |||||||  ||||||||||  ||||| || ||||| || |||||||||||    
T  54102841 aaggtgaaagtctaacaccaactttgtcagctccaatctcatcaacaactgctttcacaacctctagagggaagcgacaacgatt 54102925  T

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