View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10583_low_4 (Length: 401)

Name: NF10583_low_4
Description: NF10583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10583_low_4
NF10583_low_4
[»] chr6 (15 HSPs)
chr6 (20-389)||(5988158-5988527)
chr6 (20-137)||(25055965-25056082)
chr6 (20-137)||(21595936-21596053)
chr6 (20-136)||(9932214-9932330)
chr6 (20-136)||(32806172-32806288)
chr6 (20-137)||(6778192-6778309)
chr6 (35-137)||(24160662-24160764)
chr6 (20-118)||(26514855-26514953)
chr6 (20-137)||(16698546-16698663)
chr6 (20-136)||(5670686-5670802)
chr6 (29-136)||(3539693-3539800)
chr6 (29-137)||(8667577-8667685)
chr6 (20-95)||(24879502-24879577)
chr6 (208-257)||(34299926-34299974)
chr6 (35-103)||(26604974-26605041)
[»] chr7 (27 HSPs)
chr7 (20-137)||(31879235-31879352)
chr7 (20-137)||(31882747-31882864)
chr7 (20-137)||(12089867-12089984)
chr7 (20-136)||(22321210-22321326)
chr7 (28-137)||(2796971-2797080)
chr7 (20-128)||(1954563-1954671)
chr7 (29-137)||(6173161-6173269)
chr7 (20-123)||(24483382-24483485)
chr7 (20-137)||(2632033-2632150)
chr7 (48-137)||(3544286-3544375)
chr7 (20-137)||(8107296-8107413)
chr7 (20-137)||(19471642-19471759)
chr7 (21-121)||(12184497-12184597)
chr7 (29-136)||(31157685-31157792)
chr7 (35-137)||(2478312-2478414)
chr7 (20-118)||(12191478-12191576)
chr7 (20-137)||(31663920-31664037)
chr7 (41-137)||(10345714-10345810)
chr7 (41-137)||(23795751-23795847)
chr7 (28-114)||(4704809-4704895)
chr7 (20-118)||(45500138-45500236)
chr7 (20-109)||(22825245-22825334)
chr7 (300-373)||(9260539-9260612)
chr7 (300-373)||(9309682-9309755)
chr7 (315-372)||(7229495-7229552)
chr7 (332-375)||(24422515-24422558)
chr7 (326-378)||(40504409-40504461)
[»] chr2 (20 HSPs)
chr2 (20-137)||(42700382-42700499)
chr2 (20-137)||(36667296-36667413)
chr2 (35-137)||(28457285-28457387)
chr2 (20-137)||(8679203-8679320)
chr2 (20-137)||(23924440-23924557)
chr2 (28-137)||(27258029-27258138)
chr2 (29-137)||(32523576-32523684)
chr2 (35-133)||(14701296-14701394)
chr2 (35-137)||(36556970-36557072)
chr2 (20-136)||(29224351-29224467)
chr2 (20-136)||(29337650-29337766)
chr2 (29-137)||(13229750-13229858)
chr2 (20-118)||(36039689-36039787)
chr2 (20-118)||(43992150-43992248)
chr2 (50-137)||(28006751-28006838)
chr2 (332-384)||(5370935-5370987)
chr2 (327-375)||(17270538-17270586)
chr2 (326-381)||(17557679-17557734)
chr2 (35-137)||(24662535-24662636)
chr2 (208-257)||(19444078-19444126)
[»] scaffold0019 (2 HSPs)
scaffold0019 (20-137)||(115976-116093)
scaffold0019 (29-137)||(168816-168924)
[»] chr3 (26 HSPs)
chr3 (20-137)||(33248626-33248743)
chr3 (20-137)||(36468844-36468961)
chr3 (29-137)||(4742410-4742518)
chr3 (20-128)||(11260204-11260312)
chr3 (29-136)||(8626269-8626376)
chr3 (20-137)||(20962666-20962781)
chr3 (20-137)||(7652630-7652747)
chr3 (20-137)||(22098617-22098734)
chr3 (29-136)||(10385479-10385586)
chr3 (20-137)||(27849959-27850076)
chr3 (29-137)||(9990041-9990149)
chr3 (29-137)||(52307493-52307601)
chr3 (29-136)||(23382950-23383057)
chr3 (28-137)||(48167599-48167711)
chr3 (20-121)||(37023327-37023428)
chr3 (29-109)||(20837739-20837819)
chr3 (52-136)||(23396965-23397048)
chr3 (313-383)||(4776693-4776762)
chr3 (317-386)||(863715-863784)
chr3 (305-373)||(3256726-3256794)
chr3 (313-384)||(3257949-3258020)
chr3 (313-384)||(3285471-3285542)
chr3 (326-384)||(3404377-3404435)
chr3 (20-90)||(22098303-22098373)
chr3 (20-71)||(45528284-45528335)
chr3 (208-256)||(30710581-30710628)
[»] chr4 (25 HSPs)
chr4 (20-136)||(42532295-42532411)
chr4 (20-137)||(35416104-35416221)
chr4 (20-137)||(55327408-55327525)
chr4 (20-136)||(26373040-26373156)
chr4 (35-137)||(30217794-30217896)
chr4 (20-134)||(52619139-52619253)
chr4 (20-137)||(1188601-1188718)
chr4 (20-137)||(21668312-21668429)
chr4 (20-137)||(21677076-21677193)
chr4 (20-137)||(22048318-22048435)
chr4 (20-137)||(26070364-26070481)
chr4 (28-137)||(42272021-42272130)
chr4 (29-137)||(4838544-4838652)
chr4 (35-136)||(324090-324191)
chr4 (29-136)||(44428799-44428907)
chr4 (20-118)||(46691464-46691562)
chr4 (20-137)||(5272971-5273087)
chr4 (28-121)||(40994971-40995064)
chr4 (35-137)||(19247237-19247337)
chr4 (29-137)||(33239563-33239670)
chr4 (83-137)||(19730928-19730982)
chr4 (295-384)||(19940126-19940215)
chr4 (35-126)||(20949400-20949490)
chr4 (313-373)||(8913278-8913338)
chr4 (213-257)||(25233119-25233162)
[»] chr8 (15 HSPs)
chr8 (35-137)||(16959203-16959305)
chr8 (20-137)||(22181213-22181330)
chr8 (20-137)||(8742691-8742808)
chr8 (20-137)||(9067575-9067692)
chr8 (20-137)||(11308395-11308512)
chr8 (20-120)||(28370730-28370830)
chr8 (29-137)||(41576739-41576847)
chr8 (29-136)||(28925552-28925659)
chr8 (20-137)||(34006181-34006298)
chr8 (29-137)||(3299447-3299555)
chr8 (29-121)||(27348672-27348764)
chr8 (35-137)||(13848735-13848836)
chr8 (73-136)||(16583066-16583129)
chr8 (295-369)||(25234528-25234602)
chr8 (327-384)||(7636091-7636148)
[»] chr5 (15 HSPs)
chr5 (20-137)||(27166506-27166623)
chr5 (20-137)||(6270527-6270644)
chr5 (20-137)||(16904017-16904134)
chr5 (20-137)||(9405061-9405178)
chr5 (20-137)||(30606484-30606601)
chr5 (20-137)||(34456932-34457049)
chr5 (29-136)||(11767400-11767507)
chr5 (20-137)||(7315841-7315958)
chr5 (29-137)||(11722684-11722792)
chr5 (20-117)||(33435239-33435336)
chr5 (29-137)||(24836368-24836476)
chr5 (20-137)||(14345098-14345214)
chr5 (36-137)||(34869152-34869253)
chr5 (35-137)||(31846601-31846700)
chr5 (318-386)||(13808024-13808092)
[»] chr1 (21 HSPs)
chr1 (20-137)||(13217456-13217573)
chr1 (20-137)||(16832191-16832308)
chr1 (20-137)||(16131138-16131255)
chr1 (20-137)||(40999512-40999629)
chr1 (20-137)||(20225770-20225887)
chr1 (20-137)||(39000589-39000706)
chr1 (35-137)||(11738206-11738308)
chr1 (20-121)||(33491622-33491723)
chr1 (29-137)||(12167624-12167732)
chr1 (29-136)||(431750-431857)
chr1 (20-121)||(38121356-38121457)
chr1 (20-137)||(9667104-9667221)
chr1 (41-116)||(49249721-49249796)
chr1 (326-373)||(15245155-15245202)
chr1 (313-384)||(19882177-19882247)
chr1 (327-386)||(26661348-26661407)
chr1 (328-375)||(39439774-39439821)
chr1 (209-264)||(52429275-52429329)
chr1 (326-386)||(21502753-21502813)
chr1 (213-257)||(37506061-37506104)
chr1 (213-257)||(40144985-40145028)
[»] scaffold0298 (2 HSPs)
scaffold0298 (20-137)||(11612-11729)
scaffold0298 (20-137)||(15382-15499)
[»] scaffold0159 (1 HSPs)
scaffold0159 (20-137)||(28307-28424)
[»] scaffold0002 (1 HSPs)
scaffold0002 (20-137)||(350014-350131)
[»] scaffold0124 (1 HSPs)
scaffold0124 (20-136)||(12831-12947)
[»] scaffold0015 (1 HSPs)
scaffold0015 (29-137)||(175247-175355)
[»] scaffold0336 (1 HSPs)
scaffold0336 (29-136)||(9388-9495)
[»] scaffold0444 (1 HSPs)
scaffold0444 (29-136)||(11896-12004)
[»] scaffold0147 (1 HSPs)
scaffold0147 (20-119)||(7368-7467)
[»] scaffold0014 (1 HSPs)
scaffold0014 (20-105)||(75892-75977)
[»] scaffold0076 (1 HSPs)
scaffold0076 (35-136)||(25059-25160)
[»] scaffold0457 (1 HSPs)
scaffold0457 (48-105)||(400-457)
[»] scaffold0059 (1 HSPs)
scaffold0059 (48-137)||(14631-14720)
[»] scaffold0060 (1 HSPs)
scaffold0060 (35-128)||(6169-6261)
[»] scaffold0045 (1 HSPs)
scaffold0045 (48-105)||(45670-45726)


Alignment Details
Target: chr6 (Bit Score: 311; Significance: 1e-175; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 20 - 389
Target Start/End: Complemental strand, 5988527 - 5988158
Alignment:
Q  20 tatgtcggataggagaatagttttacataaacaaacattttatactcaaacagttaatgtgataaatattgtgaaaatgcttatgaaatatgcaactccc 119  Q
    |||||||||||| | |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5988527 tatgtcggatagaaaaatagttttacacaaacaaacattttatacccaaacagttaatgtgataaatattgtgaaaatgcttatgaaatatgcaactccc 5988428  T
Q  120 tgcggaaacaatcctattgattttaaggataaattagtacttcttttttcgtcttacttttattgtctttttagtatttgttcttcgcgtcttaaaataa 219  Q
    ||| |||||||||||| ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  5988427 tgcagaaacaatcctactgattttaaggataaattagtacttct-ttttcatcttacttttattgtctttttagtatttgttcttcgcgtcttaaaataa 5988329  T
Q  220 gtgtcacttaagaatatcaatgcaacaatttattatt-tattttcttgcaaacaatttctttaacggaaagctatatataggaagctatagtgtcacaat 318  Q
    ||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  5988328 gtgtcacttaataatatcaatgcaacaatttattattctattttcttgcaaacaatttatttaacggaaagctatatataggaagctatagtgtcacaat 5988229  T
Q  319 ccttgtaggatcaatatctttttatactataacttgaaccttgtatacttgcactcagtcattccatcctt 389  Q
    |||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  5988228 ccttgtgggatcaatatctttttatactataacttgaaccctgtatacttgcactcagtcattccatcctt 5988158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 20 - 137
Target Start/End: Complemental strand, 25056082 - 25055965
Alignment:
Q  20 tatgtcggataggagaatagttttacataaacaaacattttatactcaaacagttaatgtgataaatattgtgaaaatgcttatgaaatatgcaactccc 119  Q
    ||||||| |||||| |||||||||||| ||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||| |||||||||    
T  25056082 tatgtcgaataggaaaatagttttacacaaacaaacaatttatactcaaacacttaatatgataaatattgtgaaaatgcttatgaaatacgcaactccc 25055983  T
Q  120 tgcggaaacaatcctatt 137  Q
    ||||||||| ||| ||||    
T  25055982 tgcggaaacgatcttatt 25055965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 20 - 137
Target Start/End: Complemental strand, 21596053 - 21595936
Alignment:
Q  20 tatgtcggataggagaatagttttacataaacaaacattttatactcaaacagttaatgtgataaatattgtgaaaatgcttatgaaatatgcaactccc 119  Q
    ||||||| |||||| |||||||||||| ||||||||| ||||||| |||||| ||||||||| ||||||||||||||||||||||||||  ||| |||||    
T  21596053 tatgtcgaataggaaaatagttttacacaaacaaacaatttatacccaaacacttaatgtgacaaatattgtgaaaatgcttatgaaatgcgcacctccc 21595954  T
Q  120 tgcggaaacaatcctatt 137  Q
    ||||||||| ||||||||    
T  21595953 tgcggaaacgatcctatt 21595936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 20 - 136
Target Start/End: Complemental strand, 9932330 - 9932214
Alignment:
Q  20 tatgtcggataggagaatagttttacataaacaaacattttatactcaaacagttaatgtgataaatattgtgaaaatgcttatgaaatatgcaactccc 119  Q
    |||||||  ||||| |||||||||||| ||||||||| ||||||| |||||| ||||||||| ||||||||||||||||||||||||||| |||||||||    
T  9932330 tatgtcgattaggaaaatagttttacacaaacaaacaatttatacccaaacacttaatgtgacaaatattgtgaaaatgcttatgaaatacgcaactccc 9932231  T
Q  120 tgcggaaacaatcctat 136  Q
    || ||| || |||||||    
T  9932230 tgtggacacgatcctat 9932214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 20 - 136
Target Start/End: Complemental strand, 32806288 - 32806172
Alignment:
Q  20 tatgtcggataggagaatagttttacataaacaaacattttatactcaaacagttaatgtgataaatattgtgaaaatgcttatgaaatatgcaactccc 119  Q
    ||||||| |||||| |||||||||||| |||||||||  |||||| |||||| ||||| ||| ||||||||||||||||||||||||||| |||||||||    
T  32806288 tatgtcgaataggaaaatagttttacacaaacaaacaaattatacccaaacacttaatatgacaaatattgtgaaaatgcttatgaaatacgcaactccc 32806189  T
Q  120 tgcggaaacaatcctat 136  Q
    || |||||| |||||||    
T  32806188 tgtggaaacgatcctat 32806172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 20 - 137
Target Start/End: Original strand, 6778192 - 6778309
Alignment:
Q  20 tatgtcggataggagaatagttttacataaacaaacattttatactcaaacagttaatgtgataaatattgtgaaaatgcttatgaaatatgcaactccc 119  Q
    ||||||| |||||| |||||||||||| ||||||||| ||||||| |||| | |||| |||||||| |||||||| ||||||||||||||||||||||||    
T  6778192 tatgtcgaataggaaaatagttttacacaaacaaacaatttatacccaaatacttaaagtgataaacattgtgaatatgcttatgaaatatgcaactccc 6778291  T
Q  120 tgcggaaacaatcctatt 137  Q
    ||| ||||| ||| ||||    
T  6778292 tgcagaaacgatcatatt 6778309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 35 - 137
Target Start/End: Complemental strand, 24160764 - 24160662
Alignment:
Q  35 aatagttttacataaacaaacattttatactcaaacagttaatgtgataaatattgtgaaaatgcttatgaaatatgcaactccctgcggaaacaatcct 134  Q
    |||||||||||| ||||||| | ||||||| ||| || ||||| ||||||||||||||||||||||||||||||| |||||||| ||||||||| |||||    
T  24160764 aatagttttacacaaacaaataatttatacccaaccacttaatatgataaatattgtgaaaatgcttatgaaatacgcaactccatgcggaaacgatcct 24160665  T
Q  135 att 137  Q
    |||    
T  24160664 att 24160662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 20 - 118
Target Start/End: Complemental strand, 26514953 - 26514855
Alignment:
Q  20 tatgtcggataggagaatagttttacataaacaaacattttatactcaaacagttaatgtgataaatattgtgaaaatgcttatgaaatatgcaactcc 118  Q
    |||||||  ||||| |||||||||||| ||||||||| ||||||| |||||| ||||||||| ||||||||||||||||||||||||||| ||||||||    
T  26514953 tatgtcgattaggaaaatagttttacacaaacaaacaatttatacccaaacacttaatgtgacaaatattgtgaaaatgcttatgaaatacgcaactcc 26514855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 20 - 137
Target Start/End: Original strand, 16698546 - 16698663
Alignment:
Q  20 tatgtcggataggagaatagttttacataaacaaacattttatactcaaacagttaatgtgataaatattgtgaaaatgcttatgaaatatgcaactccc 119  Q
    |||||||  ||||| |||||||||||| ||||||||| ||||||| |||||| |||| |||| ||||||||||||||||||||||||||| |||||| |     
T  16698546 tatgtcgattaggaaaatagttttacacaaacaaacaatttatacccaaacacttaacgtgacaaatattgtgaaaatgcttatgaaatacgcaacttct 16698645  T
Q  120 tgcggaaacaatcctatt 137  Q
    || ||| |||||||||||    
T  16698646 tgtggacacaatcctatt 16698663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 20 - 136
Target Start/End: Complemental strand, 5670802 - 5670686
Alignment:
Q  20 tatgtcggataggagaatagttttacataaacaaacattttatactcaaacagttaatgtgataaatattgtgaaaatgcttatgaaatatgcaactccc 119  Q
    |||||||  ||||| |||||||||||| ||||||||| ||||||| |||||| |||| |||| ||||||||||||||||||||||||| | |||||||||    
T  5670802 tatgtcgattaggaaaatagttttacacaaacaaacaatttatacccaaacacttaacgtgacaaatattgtgaaaatgcttatgaaaaacgcaactccc 5670703  T
Q  120 tgcggaaacaatcctat 136  Q
    || ||| || |||||||    
T  5670702 tgtggacacgatcctat 5670686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 29 - 136
Target Start/End: Original strand, 3539693 - 3539800
Alignment:
Q  29 taggagaatagttttacataaacaaacattttatactcaaacagttaatgtgataaatattgtgaaaatgcttatgaaatatgcaactccctgcggaaac 128  Q
    ||||| |||||||||||| ||||||||| ||||||| |||||| |||| |||| ||||||||||||||||||||||||||| |||||||| || ||| ||    
T  3539693 taggaaaatagttttacacaaacaaacaatttatacccaaacacttaacgtgacaaatattgtgaaaatgcttatgaaatacgcaactccttgtggacac 3539792  T
Q  129 aatcctat 136  Q
     |||||||    
T  3539793 gatcctat 3539800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 29 - 137
Target Start/End: Original strand, 8667577 - 8667685
Alignment:
Q  29 taggagaatagttttacataaacaaacattttatactcaaacagttaatgtgataaatattgtgaaaatgcttatgaaatatgcaactccctgcggaaac 128  Q
    ||||| |||||||||||| ||||||||| ||||||| | |||| ||||  ||| |||||||| |||||||||||||||||||||||||||||| ||| ||    
T  8667577 taggaaaatagttttacacaaacaaacaatttataccctaacacttaacttgacaaatattgcgaaaatgcttatgaaatatgcaactccctgtggacac 8667676  T
Q  129 aatcctatt 137  Q
     ||||||||    
T  8667677 gatcctatt 8667685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 20 - 95
Target Start/End: Original strand, 24879502 - 24879577
Alignment:
Q  20 tatgtcggataggagaatagttttacataaacaaacattttatactcaaacagttaatgtgataaatattgtgaaa 95  Q
    ||||||| |||||| |||||||||||| ||||||||| ||||||| |||| | ||||  ||||||||||| |||||    
T  24879502 tatgtcgaataggaaaatagttttacaaaaacaaacaatttatacccaaatacttaaaatgataaatattatgaaa 24879577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 257
Target Start/End: Original strand, 34299926 - 34299974
Alignment:
Q  208 gtcttaaaataagtgtcacttaagaatatcaatgcaacaatttattattt 257  Q
    |||||||||||| |||||||| ||||||||||| |||| |||||||||||    
T  34299926 gtcttaaaataattgtcactttagaatatcaatacaac-atttattattt 34299974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 35 - 103
Target Start/End: Original strand, 26604974 - 26605041
Alignment:
Q  35 aatagttttacataaacaaacattttatactcaaacagttaatgtgataaatattgtgaaaatgcttat 103  Q
    |||||||||| | |||||||| |||||||| |||||| ||||  |||||||||| || |||||||||||    
T  26604974 aatagttttaaacaaacaaac-ttttatacccaaacacttaagatgataaatatcgttaaaatgcttat 26605041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 90; Significance: 2e-43; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 20 - 137
Target Start/End: Original strand, 31879235 - 31879352
Alignment:
Q  20 tatgtcggataggagaatagttttacataaacaaacattttatactcaaacagttaatgtgataaatattgtgaaaatgcttatgaaatatgcaactccc 119  Q
    ||||||| |||||| |||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||    
T  31879235 tatgtcgaataggaaaatagttttacacaaacaaacaatttatactcaaacacttaatgtgataaatattgtgaaaatgcttatgaaatacgcaactccc 31879334  T
Q  120 tgcggaaacaatcctatt 137  Q
    ||||||||| ||||||||    
T  31879335 tgcggaaacgatcctatt 31879352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 20 - 137
Target Start/End: Original strand, 31882747 - 31882864
Alignment:
Q  20 tatgtcggataggagaatagttttacataaacaaacattttatactcaaacagttaatgtgataaatattgtgaaaatgcttatgaaatatgcaactccc 119  Q
    ||||||| |||||| |||||||| ||||||||||||| ||||||| |||||| ||||| ||||||||||||||||||||||||||||||| ||||||||     
T  31882747 tatgtcgaataggaaaatagtttcacataaacaaacaatttatacccaaacacttaatatgataaatattgtgaaaatgcttatgaaatacgcaactcct 31882846  T
Q  120 tgcggaaacaatcctatt 137  Q
    ||||||||| ||||||||    
T  31882847 tgcggaaacgatcctatt 31882864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 20 - 137
Target Start/End: Complemental strand, 12089984 - 12089867
Alignment:
Q  20 tatgtcggataggagaatagttttacataaacaaacattttatactcaaacagttaatgtgataaatattgtgaaaatgcttatgaaatatgcaactccc 119  Q
    ||||||| |||||| |||||||| ||| ||||||||| ||||||| |||||| ||||||||| ||||||||||||||||||||||||||  |||||||||    
T  12089984 tatgtcgaataggaaaatagtttcacacaaacaaacaatttatacccaaacacttaatgtgacaaatattgtgaaaatgcttatgaaatgcgcaactccc 12089885  T
Q  120 tgcggaaacaatcctatt 137  Q
    ||||||||| ||||||||    
T  12089884 tgcggaaacgatcctatt 12089867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 20 - 136
Target Start/End: Complemental strand, 22321326 - 22321210
Alignment:
Q  20 tatgtcggataggagaatagttttacataaacaaacattttatactcaaacagttaatgtgataaatattgtgaaaatgcttatgaaatatgcaactccc 119  Q
    |||||||  ||||| |||||||||||| ||||||||| ||||||| |||||| ||||||||| |||||||||||||||||||||||||||||||||||||    
T  22321326 tatgtcgattaggaaaatagttttacacaaacaaacaatttatacccaaacacttaatgtgacaaatattgtgaaaatgcttatgaaatatgcaactccc 22321227  T
Q  120 tgcggaaacaatcctat 136  Q
    || ||| || |||||||    
T  22321226 tgtggacacgatcctat 22321210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 28 - 137
Target Start/End: Complemental strand, 2797080 - 2796971
Alignment:
Q  28 ataggagaatagttttacataaacaaacattttatactcaaacagttaatgtgataaatattgtgaaaatgcttatgaaatatgcaactccctgcggaaa 127  Q
    |||||| |||||||||||| ||||||||| ||||||| |||||| ||||||||| ||||||||||||||||||| ||||||| |||||||| ||||||||    
T  2797080 ataggaaaatagttttacacaaacaaacaatttatacccaaacacttaatgtgacaaatattgtgaaaatgcttttgaaatacgcaactccatgcggaaa 2796981  T
Q  128 caatcctatt 137  Q
    | ||||||||    
T  2796980 cgatcctatt 2796971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 20 - 128
Target Start/End: Original strand, 1954563 - 1954671
Alignment:
Q  20 tatgtcggataggagaatagttttacataaacaaacattttatactcaaacagttaatgtgataaatattgtgaaaatgcttatgaaatatgcaactccc 119  Q
    ||||||| |||||| |||||||||||| ||||||||| ||||||| ||| || ||||||||| |||||||||||||||||||||||||||  ||||||||    
T  1954563 tatgtcgaataggaaaatagttttacacaaacaaacaatttatacccaagcacttaatgtgacaaatattgtgaaaatgcttatgaaatacacaactccc 1954662  T
Q  120 tgcggaaac 128  Q
    |||||||||    
T  1954663 tgcggaaac 1954671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 29 - 137
Target Start/End: Original strand, 6173161 - 6173269
Alignment:
Q  29 taggagaatagttttacataaacaaacattttatactcaaacagttaatgtgataaatattgtgaaaatgcttatgaaatatgcaactccctgcggaaac 128  Q
    ||||| |||||||||||| ||||||||| |||||||||||||| |||| |||| ||||||||||||||||||||||||||| ||||||||||| ||| ||    
T  6173161 taggaaaatagttttacacaaacaaacaatttatactcaaacacttaacgtgacaaatattgtgaaaatgcttatgaaatacgcaactccctgtggacac 6173260  T
Q  129 aatcctatt 137  Q
     ||||||||    
T  6173261 gatcctatt 6173269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 20 - 123
Target Start/End: Original strand, 24483382 - 24483485
Alignment:
Q  20 tatgtcggataggagaatagttttacataaacaaacattttatactcaaacagttaatgtgataaatattgtgaaaatgcttatgaaatatgcaactccc 119  Q
    ||||||| ||| || |||||||||||||||||||||| ||||||| |||||| || |||||||||||||| ||||||||||||||||||| |||||||||    
T  24483382 tatgtcgaataagaaaatagttttacataaacaaacaatttatacccaaacacttgatgtgataaatattatgaaaatgcttatgaaatacgcaactccc 24483481  T
Q  120 tgcg 123  Q
    ||||    
T  24483482 tgcg 24483485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 20 - 137
Target Start/End: Original strand, 2632033 - 2632150
Alignment:
Q  20 tatgtcggataggagaatagttttacataaacaaacattttatactcaaacagttaatgtgataaatattgtgaaaatgcttatgaaatatgcaactccc 119  Q
    |||||||  ||||| |||||||||||| ||||||| | ||||||| |||||| ||||||||| ||||||||||||||||||||||||||| |||||||||    
T  2632033 tatgtcgtttaggaaaatagttttacacaaacaaataatttatacccaaacacttaatgtgacaaatattgtgaaaatgcttatgaaatacgcaactccc 2632132  T
Q  120 tgcggaaacaatcctatt 137  Q
    || ||| || ||||||||    
T  2632133 tgtggacacgatcctatt 2632150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 48 - 137
Target Start/End: Complemental strand, 3544375 - 3544286
Alignment:
Q  48 aaacaaacattttatactcaaacagttaatgtgataaatattgtgaaaatgcttatgaaatatgcaactccctgcggaaacaatcctatt 137  Q
    ||||||||| ||||||| |||||| |||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||    
T  3544375 aaacaaacactttatacccaaacatttaatgcgataaatattgtgaaaatgcttatgaaatacgcaactccctgcggaaacaattctatt 3544286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 20 - 137
Target Start/End: Complemental strand, 8107413 - 8107296
Alignment:
Q  20 tatgtcggataggagaatagttttacataaacaaacattttatactcaaacagttaatgtgataaatattgtgaaaatgcttatgaaatatgcaactccc 119  Q
    |||||||  ||||| | |||||||||| ||||||||| ||||||| |||||| ||||||||| ||||||||||||||||||||||||||| |||||||||    
T  8107413 tatgtcgattaggaaattagttttacacaaacaaacaatttatacccaaacacttaatgtgacaaatattgtgaaaatgcttatgaaatacgcaactccc 8107314  T
Q  120 tgcggaaacaatcctatt 137  Q
    || ||| || ||||||||    
T  8107313 tgtggacacgatcctatt 8107296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 20 - 137
Target Start/End: Complemental strand, 19471759 - 19471642
Alignment:
Q  20 tatgtcggataggagaatagttttacataaacaaacattttatactcaaacagttaatgtgataaatattgtgaaaatgcttatgaaatatgcaactccc 119  Q
    |||||||  ||||| ||||||||||||  |||||||| |||||||||||||| |||| |||| ||||||||||||||||||||||||||| |||||||||    
T  19471759 tatgtcgattaggaaaatagttttacacgaacaaacaatttatactcaaacacttaacgtgacaaatattgtgaaaatgcttatgaaatacgcaactccc 19471660  T
Q  120 tgcggaaacaatcctatt 137  Q
    || ||| || ||||||||    
T  19471659 tgtggacacgatcctatt 19471642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 21 - 121
Target Start/End: Original strand, 12184497 - 12184597
Alignment:
Q  21 atgtcggataggagaatagttttacataaacaaacattttatactcaaacagttaatgtgataaatattgtgaaaatgcttatgaaatatgcaactccct 120  Q
    |||||| |||||| |||||||||||| ||||||||| ||||||| |||||| ||||||||| |||||||||||||||||||||||||||  |||||||||    
T  12184497 atgtcgaataggaaaatagttttacacaaacaaacaatttatacccaaacacttaatgtgacaaatattgtgaaaatgcttatgaaatacacaactccct 12184596  T
Q  121 g 121  Q
    |    
T  12184597 g 12184597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 29 - 136
Target Start/End: Complemental strand, 31157792 - 31157685
Alignment:
Q  29 taggagaatagttttacataaacaaacattttatactcaaacagttaatgtgataaatattgtgaaaatgcttatgaaatatgcaactccctgcggaaac 128  Q
    ||||| |||||||||||| ||||||||| ||||||| |||||| |||| |||| ||||||||||||||||||||||||||| ||||||||||| ||| ||    
T  31157792 taggaaaatagttttacacaaacaaacaatttatacccaaacacttaacgtgacaaatattgtgaaaatgcttatgaaatacgcaactccctgtggacac 31157693  T
Q  129 aatcctat 136  Q
     |||||||    
T  31157692 gatcctat 31157685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 35 - 137
Target Start/End: Original strand, 2478312 - 2478414
Alignment:
Q  35 aatagttttacataaacaaacattttatactcaaacagttaatgtgataaatattgtgaaaatgcttatgaaatatgcaactccctgcggaaacaatcct 134  Q
    |||||||||||  ||||||||| ||||||| ||| || ||||||||| |||||||||| |||||||||||||||| |||||||||||||||||| |||||    
T  2478312 aatagttttactcaaacaaacaatttatacccaagcacttaatgtgaaaaatattgtggaaatgcttatgaaatacgcaactccctgcggaaacgatcct 2478411  T
Q  135 att 137  Q
    |||    
T  2478412 att 2478414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 20 - 118
Target Start/End: Original strand, 12191478 - 12191576
Alignment:
Q  20 tatgtcggataggagaatagttttacataaacaaacattttatactcaaacagttaatgtgataaatattgtgaaaatgcttatgaaatatgcaactcc 118  Q
    ||||||| |||||| |||||||||||| ||||||||| ||||||| | |||| ||||||||| ||||||||||||||||||||||||||| ||||||||    
T  12191478 tatgtcgaataggaaaatagttttacacaaacaaacaatttataccctaacacttaatgtgacaaatattgtgaaaatgcttatgaaatacgcaactcc 12191576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 20 - 137
Target Start/End: Complemental strand, 31664037 - 31663920
Alignment:
Q  20 tatgtcggataggagaatagttttacataaacaaacattttatactcaaacagttaatgtgataaatattgtgaaaatgcttatgaaatatgcaactccc 119  Q
    ||||||| |||||| |||||||| ||| ||||||||| ||||||| |||||| ||||||||| ||||||||||||||||||||||||||  ||||| ||     
T  31664037 tatgtcgaataggaaaatagtttcacacaaacaaacaatttatacccaaacacttaatgtgacaaatattgtgaaaatgcttatgaaatgcgcaacccct 31663938  T
Q  120 tgcggaaacaatcctatt 137  Q
    |||  |||| ||||||||    
T  31663937 tgcaaaaacgatcctatt 31663920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 41 - 137
Target Start/End: Complemental strand, 10345810 - 10345714
Alignment:
Q  41 tttacataaacaaacattttatactcaaacagttaatgtgataaatattgtgaaaatgcttatgaaatatgcaactccctgcggaaacaatcctatt 137  Q
    |||||| ||||||||| ||||||| |||||| |||| |||| ||||||||||||||||||||||||||| ||||||||||| ||| || ||||||||    
T  10345810 tttacacaaacaaacaatttatacccaaacacttaacgtgacaaatattgtgaaaatgcttatgaaatacgcaactccctgtggacacgatcctatt 10345714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 41 - 137
Target Start/End: Original strand, 23795751 - 23795847
Alignment:
Q  41 tttacataaacaaacattttatactcaaacagttaatgtgataaatattgtgaaaatgcttatgaaatatgcaactccctgcggaaacaatcctatt 137  Q
    |||||| ||||||||| ||||||| |||||| |||| |||| ||||||||||||||||||||||||||| ||||||||||| ||| || ||||||||    
T  23795751 tttacacaaacaaacaatttatacccaaacacttaacgtgacaaatattgtgaaaatgcttatgaaatacgcaactccctgtggacacgatcctatt 23795847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 28 - 114
Target Start/End: Complemental strand, 4704895 - 4704809
Alignment:
Q  28 ataggagaatagttttacataaacaaacattttatactcaaacagttaatgtgataaatattgtgaaaatgcttatgaaatatgcaa 114  Q
    |||||| |||||||||||| ||||||||| ||||||| ||| || ||||||||||||||| ||||||||| ||||||||||||||||    
T  4704895 ataggaaaatagttttacacaaacaaacaatttatacccaagcacttaatgtgataaatactgtgaaaatacttatgaaatatgcaa 4704809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 20 - 118
Target Start/End: Complemental strand, 45500236 - 45500138
Alignment:
Q  20 tatgtcggataggagaatagttttacataaacaaacattttatactcaaacagttaatgtgataaatattgtgaaaatgcttatgaaatatgcaactcc 118  Q
    |||||||  ||||| ||||| |||||| ||||||||| ||||||| |||||| ||||||||| |||||||| |||||||||||||||||| ||||||||    
T  45500236 tatgtcgattaggaaaatagctttacacaaacaaacaatttatacccaaacacttaatgtgacaaatattgagaaaatgcttatgaaatacgcaactcc 45500138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 20 - 109
Target Start/End: Original strand, 22825245 - 22825334
Alignment:
Q  20 tatgtcggataggagaatagttttacataaacaaacattttatactcaaacagttaatgtgataaatattgtgaaaatgcttatgaaata 109  Q
    ||||||| |||||| |||||||||||| ||||||||| ||||||| |||||| |||| |||| ||||||| |||||||||||||||||||    
T  22825245 tatgtcgaataggaaaatagttttacacaaacaaacaatttatacccaaacacttaacgtgacaaatattatgaaaatgcttatgaaata 22825334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 300 - 373
Target Start/End: Original strand, 9260539 - 9260612
Alignment:
Q  300 gaagctatagtgtcacaatccttgtaggatcaatatctttttatactataacttgaaccttgtatacttgcact 373  Q
    ||||||||||   |||||||| ||| ||||| ||||||||||||||||||||||| || || ||||||||||||    
T  9260539 gaagctatagctccacaatccctgtgggatcgatatctttttatactataacttggacattatatacttgcact 9260612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 300 - 373
Target Start/End: Complemental strand, 9309755 - 9309682
Alignment:
Q  300 gaagctatagtgtcacaatccttgtaggatcaatatctttttatactataacttgaaccttgtatacttgcact 373  Q
    ||||||||||   |||||||| ||| ||||| ||||||||||||||||||||||| || || ||||||||||||    
T  9309755 gaagctatagctccacaatccctgtgggatcgatatctttttatactataacttggacattatatacttgcact 9309682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 315 - 372
Target Start/End: Original strand, 7229495 - 7229552
Alignment:
Q  315 caatccttgtaggatcaatatctttttatactataacttgaaccttgtatacttgcac 372  Q
    |||||| ||| ||||||||||||||||||||||| ||||| ||  |||||||||||||    
T  7229495 caatccatgtgggatcaatatctttttatactattacttggacaatgtatacttgcac 7229552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 332 - 375
Target Start/End: Original strand, 24422515 - 24422558
Alignment:
Q  332 atatctttttatactataacttgaaccttgtatacttgcactca 375  Q
    |||||||||||||| ||||||| ||| |||||||||||||||||    
T  24422515 atatctttttataccataacttaaacattgtatacttgcactca 24422558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 326 - 378
Target Start/End: Complemental strand, 40504461 - 40504409
Alignment:
Q  326 ggatcaatatctttttatactataacttgaaccttgtatacttgcactcagtc 378  Q
    ||||| ||||||||||||| |||||||| ||| ||||||||||| ||| ||||    
T  40504461 ggatcgatatctttttatattataacttaaacattgtatacttgtacttagtc 40504409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 90; Significance: 2e-43; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 20 - 137
Target Start/End: Complemental strand, 42700499 - 42700382
Alignment:
Q  20 tatgtcggataggagaatagttttacataaacaaacattttatactcaaacagttaatgtgataaatattgtgaaaatgcttatgaaatatgcaactccc 119  Q
    ||||||| |||||| |||||||||||| ||||||||| |||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||    
T  42700499 tatgtcgaataggaaaatagttttacacaaacaaacaatttatactcaaacacttaatgtgacaaatattgtgaaaatgcttatgaaatatgcaactccc 42700400  T
Q  120 tgcggaaacaatcctatt 137  Q
    ||||||||| ||||||||    
T  42700399 tgcggaaacgatcctatt 42700382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 20 - 137
Target Start/End: Complemental strand, 36667413 - 36667296
Alignment:
Q  20 tatgtcggataggagaatagttttacataaacaaacattttatactcaaacagttaatgtgataaatattgtgaaaatgcttatgaaatatgcaactccc 119  Q
    ||||||| |||||| |||||||||||| ||||||||| |||||| ||||||| ||||||||| ||||||||||||||||||||||||||| |||||||||    
T  36667413 tatgtcgaataggaaaatagttttacacaaacaaacaatttatattcaaacacttaatgtgacaaatattgtgaaaatgcttatgaaatacgcaactccc 36667314  T
Q  120 tgcggaaacaatcctatt 137  Q
    ||||||||| ||||||||    
T  36667313 tgcggaaacgatcctatt 36667296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 35 - 137
Target Start/End: Complemental strand, 28457387 - 28457285
Alignment:
Q  35 aatagttttacataaacaaacattttatactcaaacagttaatgtgataaatattgtgaaaatgcttatgaaatatgcaactccctgcggaaacaatcct 134  Q
    |||||||||||| ||||||||| ||||||| |||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |    
T  28457387 aatagttttacacaaacaaacaatttatacccaaacacttaatgtgataaatattgtgaaaatgcttatgaaatacgcaactccctgcggaaacgatcat 28457288  T
Q  135 att 137  Q
    |||    
T  28457287 att 28457285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 20 - 137
Target Start/End: Complemental strand, 8679320 - 8679203
Alignment:
Q  20 tatgtcggataggagaatagttttacataaacaaacattttatactcaaacagttaatgtgataaatattgtgaaaatgcttatgaaatatgcaactccc 119  Q
    ||||||| |||||| |||||||||||| ||||||||| ||||||| |||||| ||||||||| |||||||||||||||||||||||| ||| ||||||||    
T  8679320 tatgtcgaataggaaaatagttttacacaaacaaacaatttatacccaaacacttaatgtgacaaatattgtgaaaatgcttatgaattattcaactccc 8679221  T
Q  120 tgcggaaacaatcctatt 137  Q
    || |||||| ||||||||    
T  8679220 tgtggaaacgatcctatt 8679203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 20 - 137
Target Start/End: Complemental strand, 23924557 - 23924440
Alignment:
Q  20 tatgtcggataggagaatagttttacataaacaaacattttatactcaaacagttaatgtgataaatattgtgaaaatgcttatgaaatatgcaactccc 119  Q
    ||||||| |||||| |||||||||||| |||| |||| ||||||| |||||| ||||||||| ||||||||||||||||||||||||||| |||||||||    
T  23924557 tatgtcgaataggaaaatagttttacagaaacgaacaatttatacccaaacacttaatgtgacaaatattgtgaaaatgcttatgaaatacgcaactccc 23924458  T
Q  120 tgcggaaacaatcctatt 137  Q
    | ||||||| ||||||||    
T  23924457 tacggaaacgatcctatt 23924440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 28 - 137
Target Start/End: Original strand, 27258029 - 27258138
Alignment:
Q  28 ataggagaatagttttacataaacaaacattttatactcaaacagttaatgtgataaatattgtgaaaatgcttatgaaatatgcaactccctgcggaaa 127  Q
    |||||| |||||||||||| ||||||||| ||||||| |||||| ||||| ||||||||||||||||||||||||||||||| |||||| ||||||||||    
T  27258029 ataggaaaatagttttacacaaacaaacactttatacccaaacacttaatatgataaatattgtgaaaatgcttatgaaatacgcaacttcctgcggaaa 27258128  T
Q  128 caatcctatt 137  Q
    ||||| ||||    
T  27258129 caatcatatt 27258138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 29 - 137
Target Start/End: Original strand, 32523576 - 32523684
Alignment:
Q  29 taggagaatagttttacataaacaaacattttatactcaaacagttaatgtgataaatattgtgaaaatgcttatgaaatatgcaactccctgcggaaac 128  Q
    ||||| |||||||||||| ||||||||| ||||||| |||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||    
T  32523576 taggaaaatagttttacacaaacaaacactttatacccaaacacttaatatgataaatattgtgaaaatgtttatgaaatatgcaactccctgcagaaac 32523675  T
Q  129 aatcctatt 137  Q
    |||| ||||    
T  32523676 aatcatatt 32523684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 35 - 133
Target Start/End: Original strand, 14701296 - 14701394
Alignment:
Q  35 aatagttttacataaacaaacattttatactcaaacagttaatgtgataaatattgtgaaaatgcttatgaaatatgcaactccctgcggaaacaatcc 133  Q
    |||||||||||| ||||||||| |||||||||||||| | ||||||||||||||| ||||||||||||||||||| |||||||||||||||||| ||||    
T  14701296 aatagttttacacaaacaaacaatttatactcaaacactcaatgtgataaatattatgaaaatgcttatgaaatacgcaactccctgcggaaacgatcc 14701394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 35 - 137
Target Start/End: Complemental strand, 36557072 - 36556970
Alignment:
Q  35 aatagttttacataaacaaacattttatactcaaacagttaatgtgataaatattgtgaaaatgcttatgaaatatgcaactccctgcggaaacaatcct 134  Q
    |||||||||||| ||||||||| ||||||| |||||| |||||||||||||||||||||||||||||||||||||  ||||||||||||||||| ||| |    
T  36557072 aatagttttacacaaacaaacaatttatacccaaacacttaatgtgataaatattgtgaaaatgcttatgaaatacacaactccctgcggaaacgatcat 36556973  T
Q  135 att 137  Q
    |||    
T  36556972 att 36556970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 20 - 136
Target Start/End: Original strand, 29224351 - 29224467
Alignment:
Q  20 tatgtcggataggagaatagttttacataaacaaacattttatactcaaacagttaatgtgataaatattgtgaaaatgcttatgaaatatgcaactccc 119  Q
    |||||||  ||||| |||||||||||| ||||||||| ||||||| |||||| ||||||||| ||||||||||||||||||||||||||| |||||||||    
T  29224351 tatgtcgattaggaaaatagttttacacaaacaaacaatttatacccaaacacttaatgtgacaaatattgtgaaaatgcttatgaaatacgcaactccc 29224450  T
Q  120 tgcggaaacaatcctat 136  Q
    || ||| || |||||||    
T  29224451 tgtggacacgatcctat 29224467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 20 - 136
Target Start/End: Original strand, 29337650 - 29337766
Alignment:
Q  20 tatgtcggataggagaatagttttacataaacaaacattttatactcaaacagttaatgtgataaatattgtgaaaatgcttatgaaatatgcaactccc 119  Q
    |||||||  ||||| |||||||||||| ||||||||| ||||||| |||||| ||||||||| ||||||||||||||||||||||||||| |||||||||    
T  29337650 tatgtcgattaggaaaatagttttacacaaacaaacaatttatacccaaacacttaatgtgacaaatattgtgaaaatgcttatgaaatacgcaactccc 29337749  T
Q  120 tgcggaaacaatcctat 136  Q
    || ||| || |||||||    
T  29337750 tgtggacacgatcctat 29337766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 29 - 137
Target Start/End: Complemental strand, 13229858 - 13229750
Alignment:
Q  29 taggagaatagttttacataaacaaacattttatactcaaacagttaatgtgataaatattgtgaaaatgcttatgaaatatgcaactccctgcggaaac 128  Q
    ||||| |||||||||||| ||||||||| |||||||||||||| ||||||||| ||||||| | ||||||||||| ||||| |||||||| || ||||||    
T  13229858 taggaaaatagttttacacaaacaaacaatttatactcaaacacttaatgtgacaaatattataaaaatgcttataaaatacgcaactccatgtggaaac 13229759  T
Q  129 aatcctatt 137  Q
     ||| ||||    
T  13229758 gatcatatt 13229750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 20 - 118
Target Start/End: Complemental strand, 36039787 - 36039689
Alignment:
Q  20 tatgtcggataggagaatagttttacataaacaaacattttatactcaaacagttaatgtgataaatattgtgaaaatgcttatgaaatatgcaactcc 118  Q
    |||||||  ||||| |||||||||||| ||||||||| ||||||| |||||| |||| |||| ||||||||||||||||| ||||||||| ||||||||    
T  36039787 tatgtcgattaggaaaatagttttacacaaacaaacaatttatacccaaacacttaacgtgacaaatattgtgaaaatgcatatgaaatacgcaactcc 36039689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 20 - 118
Target Start/End: Original strand, 43992150 - 43992248
Alignment:
Q  20 tatgtcggataggagaatagttttacataaacaaacattttatactcaaacagttaatgtgataaatattgtgaaaatgcttatgaaatatgcaactcc 118  Q
    |||||||  ||||| ||||||||| |  ||||||||| ||||||| |||||| ||||||||| ||||||||||||||||||||||||||| ||||||||    
T  43992150 tatgtcgattaggaaaatagttttgcgcaaacaaacaatttatacccaaacacttaatgtgacaaatattgtgaaaatgcttatgaaatacgcaactcc 43992248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 50 - 137
Target Start/End: Original strand, 28006751 - 28006838
Alignment:
Q  50 acaaacattttatactcaaacagttaatgtgataaatattgtgaaaatgcttatgaaatatgcaactccctgcggaaacaatcctatt 137  Q
    ||||||| ||||||| |||||| ||||| |||||||||||||||||||||||||||||||  ||||| ||| ||||||| ||||||||    
T  28006751 acaaacaatttatacccaaacacttaatatgataaatattgtgaaaatgcttatgaaatacacaacttcctacggaaacgatcctatt 28006838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 332 - 384
Target Start/End: Original strand, 5370935 - 5370987
Alignment:
Q  332 atatctttttatactataacttgaaccttgtatacttgcactcagtcattcca 384  Q
    |||||||||||||||||||||||||| |||||||||||||||||||| |||||    
T  5370935 atatctttttatactataacttgaacattgtatacttgcactcagtctttcca 5370987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 327 - 375
Target Start/End: Original strand, 17270538 - 17270586
Alignment:
Q  327 gatcaatatctttttatactataacttgaaccttgtatacttgcactca 375  Q
    ||||||||||||||||||||||||||| ||| |||||||||||||||||    
T  17270538 gatcaatatctttttatactataacttaaacattgtatacttgcactca 17270586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 326 - 381
Target Start/End: Complemental strand, 17557734 - 17557679
Alignment:
Q  326 ggatcaatatctttttatactataacttgaaccttgtatacttgcactcagtcatt 381  Q
    |||||||||||||||||||| | ||||||||| ||||||||||||||| |||||||    
T  17557734 ggatcaatatctttttatacaagaacttgaacattgtatacttgcacttagtcatt 17557679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 35 - 137
Target Start/End: Complemental strand, 24662636 - 24662535
Alignment:
Q  35 aatagttttacataaacaaacattttatactcaaacagttaatgtgataaatattgtgaaaatgcttatgaaatatgcaactccctgcggaaacaatcct 134  Q
    |||||||||||| |||||||| |||||||| ||||||  |||| ||||||||  |||  ||||||||| || ||| |||||||||||| ||||| |||||    
T  24662636 aatagttttacacaaacaaac-ttttatacccaaacacctaatatgataaatgatgttgaaatgcttaagatatacgcaactccctgcagaaacgatcct 24662538  T
Q  135 att 137  Q
    |||    
T  24662537 att 24662535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 257
Target Start/End: Original strand, 19444078 - 19444126
Alignment:
Q  208 gtcttaaaataagtgtcacttaagaatatcaatgcaacaatttattattt 257  Q
    |||||||||||| |||||||| | |||||||||||||| |||||||||||    
T  19444078 gtcttaaaataattgtcacttcaaaatatcaatgcaac-atttattattt 19444126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 86; Significance: 5e-41; HSPs: 2)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 20 - 137
Target Start/End: Complemental strand, 116093 - 115976
Alignment:
Q  20 tatgtcggataggagaatagttttacataaacaaacattttatactcaaacagttaatgtgataaatattgtgaaaatgcttatgaaatatgcaactccc 119  Q
    ||||||| |||||| |||||||||||| ||||||||| ||||||| |||||| ||||||||| |||||||||||||||||||||||||||||||||||||    
T  116093 tatgtcgaataggaaaatagttttacacaaacaaacaatttatacccaaacacttaatgtgacaaatattgtgaaaatgcttatgaaatatgcaactccc 115994  T
Q  120 tgcggaaacaatcctatt 137  Q
    ||||||||| ||||||||    
T  115993 tgcggaaacgatcctatt 115976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 29 - 137
Target Start/End: Complemental strand, 168924 - 168816
Alignment:
Q  29 taggagaatagttttacataaacaaacattttatactcaaacagttaatgtgataaatattgtgaaaatgcttatgaaatatgcaactccctgcggaaac 128  Q
    ||||| |||||||||||| ||||||||| ||||||| |||||| |||| |||| ||||||||||||||||||||||||||| ||||||||||| ||| ||    
T  168924 taggaaaatagttttacacaaacaaacaatttatacccaaacacttaacgtgacaaatattgtgaaaatgcttatgaaatacgcaactccctgtggacac 168825  T
Q  129 aatcctatt 137  Q
     ||||||||    
T  168824 gatcctatt 168816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 86; Significance: 5e-41; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 20 - 137
Target Start/End: Original strand, 33248626 - 33248743
Alignment:
Q  20 tatgtcggataggagaatagttttacataaacaaacattttatactcaaacagttaatgtgataaatattgtgaaaatgcttatgaaatatgcaactccc 119  Q
    ||||||| |||||| |||||||||||| ||||||||| ||||||| |||||| ||||||||||||||||||||||||||||||||||||| |||||||||    
T  33248626 tatgtcgaataggaaaatagttttacacaaacaaacaatttatacccaaacacttaatgtgataaatattgtgaaaatgcttatgaaatacgcaactccc 33248725  T
Q  120 tgcggaaacaatcctatt 137  Q
    ||||||||| ||||||||    
T  33248726 tgcggaaacgatcctatt 33248743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 20 - 137
Target Start/End: Complemental strand, 36468961 - 36468844
Alignment:
Q  20 tatgtcggataggagaatagttttacataaacaaacattttatactcaaacagttaatgtgataaatattgtgaaaatgcttatgaaatatgcaactccc 119  Q
    ||||||| |||||| |||||||||||| ||||||||| ||||||| |||||| ||||||||||||||||||||||| ||||||||||||| |||||||||    
T  36468961 tatgtcgaataggaaaatagttttacacaaacaaacaatttatacccaaacacttaatgtgataaatattgtgaaagtgcttatgaaatacgcaactccc 36468862  T
Q  120 tgcggaaacaatcctatt 137  Q
    ||||||||| ||||||||    
T  36468861 tgcggaaacgatcctatt 36468844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 29 - 137
Target Start/End: Complemental strand, 4742518 - 4742410
Alignment:
Q  29 taggagaatagttttacataaacaaacattttatactcaaacagttaatgtgataaatattgtgaaaatgcttatgaaatatgcaactccctgcggaaac 128  Q
    ||||| |||||||||||| ||| ||||| ||||||| |||||| ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||    
T  4742518 taggaaaatagttttacacaaaaaaacaatttatacccaaacacttaatgtgacaaatattgtgaaaatgcttatgaaatacgcaactccctgcggaaac 4742419  T
Q  129 aatcctatt 137  Q
     ||||||||    
T  4742418 gatcctatt 4742410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 20 - 128
Target Start/End: Complemental strand, 11260312 - 11260204
Alignment:
Q  20 tatgtcggataggagaatagttttacataaacaaacattttatactcaaacagttaatgtgataaatattgtgaaaatgcttatgaaatatgcaactccc 119  Q
    ||||||| |||||| |||||||||||| ||||||||| ||||||| |||||| ||||||||| ||||||||||||||||||||||||||| |||| ||||    
T  11260312 tatgtcgaataggaaaatagttttacacaaacaaacaatttatacccaaacacttaatgtgacaaatattgtgaaaatgcttatgaaatacgcaagtccc 11260213  T
Q  120 tgcggaaac 128  Q
    |||||||||    
T  11260212 tgcggaaac 11260204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 29 - 136
Target Start/End: Original strand, 8626269 - 8626376
Alignment:
Q  29 taggagaatagttttacataaacaaacattttatactcaaacagttaatgtgataaatattgtgaaaatgcttatgaaatatgcaactccctgcggaaac 128  Q
    ||||| |||||||||||| ||||||||| ||||||| |||||| |||| |||| ||||||||||||||||||||||||||||||||||||||| ||| ||    
T  8626269 taggaaaatagttttacacaaacaaacaatttatacccaaacacttaacgtgacaaatattgtgaaaatgcttatgaaatatgcaactccctgtggacac 8626368  T
Q  129 aatcctat 136  Q
     |||||||    
T  8626369 gatcctat 8626376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 20 - 137
Target Start/End: Complemental strand, 20962781 - 20962666
Alignment:
Q  20 tatgtcggataggagaatagttttacataaacaaacattttatactcaaacagttaatgtgataaatattgtgaaaatgcttatgaaatatgcaactccc 119  Q
    ||||||| |||||| |||||||||||| ||||||||| ||||||| |||||| |  |||||||||||||||||||||||||||||||||| |||||||||    
T  20962781 tatgtcgaataggaaaatagttttacacaaacaaacaatttatacccaaacact--atgtgataaatattgtgaaaatgcttatgaaatacgcaactccc 20962684  T
Q  120 tgcggaaacaatcctatt 137  Q
    | | ||||| ||||||||    
T  20962683 tacagaaacgatcctatt 20962666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 20 - 137
Target Start/End: Complemental strand, 7652747 - 7652630
Alignment:
Q  20 tatgtcggataggagaatagttttacataaacaaacattttatactcaaacagttaatgtgataaatattgtgaaaatgcttatgaaatatgcaactccc 119  Q
    |||||||  ||||| | |||||||||| ||||||||| ||||||| |||||| ||||||||| ||||||||||||||||||||||||||| |||||||||    
T  7652747 tatgtcgattaggaaattagttttacacaaacaaacaatttatacccaaacacttaatgtgacaaatattgtgaaaatgcttatgaaatacgcaactccc 7652648  T
Q  120 tgcggaaacaatcctatt 137  Q
    || ||| || ||||||||    
T  7652647 tgtggacacgatcctatt 7652630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 20 - 137
Target Start/End: Original strand, 22098617 - 22098734
Alignment:
Q  20 tatgtcggataggagaatagttttacataaacaaacattttatactcaaacagttaatgtgataaatattgtgaaaatgcttatgaaatatgcaactccc 119  Q
    |||||||  ||||| |||||||||||| ||||||||| ||||||| |||||| |||| |||| |||||||||||||||| ||||||||||||||||||||    
T  22098617 tatgtcgattaggaaaatagttttacacaaacaaacaatttatacccaaacacttaacgtgacaaatattgtgaaaatgtttatgaaatatgcaactccc 22098716  T
Q  120 tgcggaaacaatcctatt 137  Q
    || ||| || ||||||||    
T  22098717 tgtggacacgatcctatt 22098734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 29 - 136
Target Start/End: Complemental strand, 10385586 - 10385479
Alignment:
Q  29 taggagaatagttttacataaacaaacattttatactcaaacagttaatgtgataaatattgtgaaaatgcttatgaaatatgcaactccctgcggaaac 128  Q
    ||||| |||||||||||| ||||||||| ||||||| |||||| |||| |||| ||||||||||||||||||||||||||| ||||||||||| ||| ||    
T  10385586 taggaaaatagttttacacaaacaaacaatttatacccaaacacttaacgtgacaaatattgtgaaaatgcttatgaaatacgcaactccctgtggacac 10385487  T
Q  129 aatcctat 136  Q
     |||||||    
T  10385486 gatcctat 10385479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 20 - 137
Target Start/End: Complemental strand, 27850076 - 27849959
Alignment:
Q  20 tatgtcggataggagaatagttttacataaacaaacattttatactcaaacagttaatgtgataaatattgtgaaaatgcttatgaaatatgcaactccc 119  Q
    |||||||  ||||| |||||||||||| ||||||||| ||||||| |||||| |||| |||| ||||||||||||||||||||||||||| ||||||| |    
T  27850076 tatgtcgattaggaaaatagttttacacaaacaaacaatttatacccaaacacttaacgtgacaaatattgtgaaaatgcttatgaaatacgcaactctc 27849977  T
Q  120 tgcggaaacaatcctatt 137  Q
    || ||| || ||||||||    
T  27849976 tgtggacacgatcctatt 27849959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 29 - 137
Target Start/End: Original strand, 9990041 - 9990149
Alignment:
Q  29 taggagaatagttttacataaacaaacattttatactcaaacagttaatgtgataaatattgtgaaaatgcttatgaaatatgcaactccctgcggaaac 128  Q
    ||||| |||||||||||| ||||||||| ||||||| |||||| |||| |||| |||||||| |||||||||||||||||| ||||||||||| ||| ||    
T  9990041 taggaaaatagttttacacaaacaaacaatttatacccaaacacttaacgtgacaaatattgcgaaaatgcttatgaaatacgcaactccctgtggacac 9990140  T
Q  129 aatcctatt 137  Q
     ||||||||    
T  9990141 gatcctatt 9990149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 29 - 137
Target Start/End: Complemental strand, 52307601 - 52307493
Alignment:
Q  29 taggagaatagttttacataaacaaacattttatactcaaacagttaatgtgataaatattgtgaaaatgcttatgaaatatgcaactccctgcggaaac 128  Q
    ||||| |||||||||||| ||||||||| ||||||| |||||| |||| |||| ||||||||||||||||||||||||||| |||||||| || ||| ||    
T  52307601 taggaaaatagttttacacaaacaaacaatttatacccaaacacttaacgtgacaaatattgtgaaaatgcttatgaaatacgcaactccttgtggacac 52307502  T
Q  129 aatcctatt 137  Q
     ||||||||    
T  52307501 gatcctatt 52307493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 29 - 136
Target Start/End: Original strand, 23382950 - 23383057
Alignment:
Q  29 taggagaatagttttacataaacaaacattttatactcaaacagttaatgtgataaatattgtgaaaatgcttatgaaatatgcaactccctgcggaaac 128  Q
    ||||| |||||||||||| ||||||||| || |||| |||||| |||| || | ||||||||||||||||||||||||||| ||||||||||| ||| ||    
T  23382950 taggaaaatagttttacacaaacaaacaattaatacccaaacacttaacgtcacaaatattgtgaaaatgcttatgaaatacgcaactccctgtggacac 23383049  T
Q  129 aatcctat 136  Q
     |||||||    
T  23383050 gatcctat 23383057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 28 - 137
Target Start/End: Complemental strand, 48167711 - 48167599
Alignment:
Q  28 ataggagaatagttttacataaacaaacattttat---actcaaacagttaatgtgataaatattgtgaaaatgcttatgaaatatgcaactccctgcgg 124  Q
    |||||| |||||||||||  ||||||||| |||||   || |||||| ||||||||| ||||||||||||||||||||||||||| |||||||||||  |    
T  48167711 ataggaaaatagttttacgcaaacaaacaatttattatacccaaacacttaatgtgacaaatattgtgaaaatgcttatgaaatacgcaactccctgtcg 48167612  T
Q  125 aaacaatcctatt 137  Q
    |||| ||||||||    
T  48167611 aaacgatcctatt 48167599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 20 - 121
Target Start/End: Original strand, 37023327 - 37023428
Alignment:
Q  20 tatgtcggataggagaatagttttacataaacaaacattttatactcaaacagttaatgtgataaatattgtgaaaatgcttatgaaatatgcaactccc 119  Q
    |||||||  ||||| |||||||||||  ||||||||| ||||||| |||||| ||||  ||| ||||||||||||||||||||||||||||| |||||||    
T  37023327 tatgtcgattaggaaaatagttttacgcaaacaaacaatttatacccaaacacttaacatgacaaatattgtgaaaatgcttatgaaatatgtaactccc 37023426  T
Q  120 tg 121  Q
    ||    
T  37023427 tg 37023428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 29 - 109
Target Start/End: Original strand, 20837739 - 20837819
Alignment:
Q  29 taggagaatagttttacataaacaaacattttatactcaaacagttaatgtgataaatattgtgaaaatgcttatgaaata 109  Q
    ||||| |||||||||||| ||||||||| ||||||| |||||| |||| |||| ||||||||| |||||||||||||||||    
T  20837739 taggaaaatagttttacacaaacaaacaatttatacccaaacacttaacgtgacaaatattgtaaaaatgcttatgaaata 20837819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 52 - 136
Target Start/End: Original strand, 23396965 - 23397048
Alignment:
Q  52 aaacattttatactcaaacagttaatgtgataaatattgtgaaaatgcttatgaaatatgcaactccctgcggaaacaatcctat 136  Q
    ||||| ||||||| |||||| |||| |||| |||||||||||||||||||||| |||| ||||||||||| ||| || |||||||    
T  23396965 aaacaatttatacccaaacacttaacgtgacaaatattgtgaaaatgcttatg-aatacgcaactccctgtggatacgatcctat 23397048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 313 - 383
Target Start/End: Original strand, 4776693 - 4776762
Alignment:
Q  313 cacaatccttgtaggatcaatatctttttatactataacttgaaccttgtatacttgcactcagtcattcc 383  Q
    |||||||||||| || ||||||||||||||||||||||||||||  ||||||||||| | |||||| ||||    
T  4776693 cacaatccttgtggg-tcaatatctttttatactataacttgaatgttgtatacttgaattcagtctttcc 4776762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 317 - 386
Target Start/End: Original strand, 863715 - 863784
Alignment:
Q  317 atccttgtaggatcaatatctttttatactataacttgaaccttgtatacttgcactcagtcattccatc 386  Q
    |||||||| ||||||||||||||||| ||||||||||| ||  |||||||||||||| | || |||||||    
T  863715 atccttgtgggatcaatatctttttaaactataacttggacaatgtatacttgcacttaatctttccatc 863784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 305 - 373
Target Start/End: Original strand, 3256726 - 3256794
Alignment:
Q  305 tatagtgtcacaatccttgtaggatcaatatctttttatactataacttgaaccttgtatacttgcact 373  Q
    |||||| |||||| | |||| ||||| ||||||||||||||||||||||| ||  ||||||||||||||    
T  3256726 tatagtttcacaacctttgttggatcgatatctttttatactataacttggacgatgtatacttgcact 3256794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 313 - 384
Target Start/End: Original strand, 3257949 - 3258020
Alignment:
Q  313 cacaatccttgtaggatcaatatctttttatactataacttgaaccttgtatacttgcactcagtcattcca 384  Q
    |||||||| ||| ||||| ||| ||||||||| |||||||||||  ||||||||||||||| |||| |||||    
T  3257949 cacaatccatgttggatcgatacctttttatattataacttgaaaattgtatacttgcacttagtctttcca 3258020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 313 - 384
Target Start/End: Original strand, 3285471 - 3285542
Alignment:
Q  313 cacaatccttgtaggatcaatatctttttatactataacttgaaccttgtatacttgcactcagtcattcca 384  Q
    |||||||| ||| ||||| ||||||||||||||||||||||| |   |||||||||||||| |||| |||||    
T  3285471 cacaatccctgttggatcgatatctttttatactataacttggaaagtgtatacttgcacttagtctttcca 3285542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 326 - 384
Target Start/End: Original strand, 3404377 - 3404435
Alignment:
Q  326 ggatcaatatctttttatactataacttgaaccttgtatacttgcactcagtcattcca 384  Q
    |||||||||| ||||||||||||||||  |||  ||||||||||||||||||| |||||    
T  3404377 ggatcaatatatttttatactataactataacaatgtatacttgcactcagtctttcca 3404435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 90
Target Start/End: Original strand, 22098303 - 22098373
Alignment:
Q  20 tatgtcggataggagaatagttttacataaacaaacattttatactcaaacagttaatgtgataaatattg 90  Q
    |||||||  ||||| |||||||||||| ||||||||| ||||||| |||||| |||| |||| ||||||||    
T  22098303 tatgtcgattaggaaaatagttttacacaaacaaacaatttatacccaaacacttaacgtgacaaatattg 22098373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 20 - 71
Target Start/End: Original strand, 45528284 - 45528335
Alignment:
Q  20 tatgtcggataggagaatagttttacataaacaaacattttatactcaaaca 71  Q
    ||||||| |||||| |||||||||||| ||||||||| ||||||| ||||||    
T  45528284 tatgtcgaataggaaaatagttttacacaaacaaacaatttatacccaaaca 45528335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 208 - 256
Target Start/End: Original strand, 30710581 - 30710628
Alignment:
Q  208 gtcttaaaataagtgtcacttaagaatatcaatgcaacaatttattatt 256  Q
    |||| ||||||| |||||||| |||||||||||||||| ||||||||||    
T  30710581 gtctcaaaataattgtcactttagaatatcaatgcaac-atttattatt 30710628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 81; Significance: 5e-38; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 20 - 136
Target Start/End: Complemental strand, 42532411 - 42532295
Alignment:
Q  20 tatgtcggataggagaatagttttacataaacaaacattttatactcaaacagttaatgtgataaatattgtgaaaatgcttatgaaatatgcaactccc 119  Q
    ||||||| |||||| |||||||||||| ||||||||| ||||||| |||||||||||||||| |||||||||||||||||||| |||||| |||||||||    
T  42532411 tatgtcgaataggaaaatagttttacacaaacaaacaatttatacccaaacagttaatgtgacaaatattgtgaaaatgcttacgaaatacgcaactccc 42532312  T
Q  120 tgcggaaacaatcctat 136  Q
    ||||||||| |||||||    
T  42532311 tgcggaaacgatcctat 42532295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 20 - 137
Target Start/End: Complemental strand, 35416221 - 35416104
Alignment:
Q  20 tatgtcggataggagaatagttttacataaacaaacattttatactcaaacagttaatgtgataaatattgtgaaaatgcttatgaaatatgcaactccc 119  Q
    ||||||| |||||| |||||||||||| ||||||| | ||||||| |||||| ||||||||| ||||||||||||||||||||||||||| |||||||||    
T  35416221 tatgtcgaataggaaaatagttttacagaaacaaataatttatacccaaacacttaatgtgacaaatattgtgaaaatgcttatgaaatacgcaactccc 35416122  T
Q  120 tgcggaaacaatcctatt 137  Q
    ||||||||| ||||||||    
T  35416121 tgcggaaacgatcctatt 35416104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 20 - 137
Target Start/End: Original strand, 55327408 - 55327525
Alignment:
Q  20 tatgtcggataggagaatagttttacataaacaaacattttatactcaaacagttaatgtgataaatattgtgaaaatgcttatgaaatatgcaactccc 119  Q
    ||||||| |||||| |||||||||||| |||||| || ||||||| |||||| ||||||||||||||||||||||||||||||||||||| |||||||||    
T  55327408 tatgtcgaataggaaaatagttttacacaaacaatcaatttatacccaaacacttaatgtgataaatattgtgaaaatgcttatgaaatacgcaactccc 55327507  T
Q  120 tgcggaaacaatcctatt 137  Q
    ||||||||| ||| ||||    
T  55327508 tgcggaaacgatcatatt 55327525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 20 - 136
Target Start/End: Complemental strand, 26373156 - 26373040
Alignment:
Q  20 tatgtcggataggagaatagttttacataaacaaacattttatactcaaacagttaatgtgataaatattgtgaaaatgcttatgaaatatgcaactccc 119  Q
    ||||||| |||||| |||||||||||| ||||||||| ||||||| |||||| ||||||||| ||||||||||||||||||||||||||| ||||||||     
T  26373156 tatgtcgaataggaaaatagttttacacaaacaaacaatttatacccaaacacttaatgtgacaaatattgtgaaaatgcttatgaaatacgcaactcct 26373057  T
Q  120 tgcggaaacaatcctat 136  Q
    ||||||||| |||||||    
T  26373056 tgcggaaacgatcctat 26373040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 35 - 137
Target Start/End: Complemental strand, 30217896 - 30217794
Alignment:
Q  35 aatagttttacataaacaaacattttatactcaaacagttaatgtgataaatattgtgaaaatgcttatgaaatatgcaactccctgcggaaacaatcct 134  Q
    |||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| ||||| |||| ||| |    
T  30217896 aatagttttacacaaacaaacaatttatactcaaacacttaatgtgataaatattgtgaaaatgcttatgaaatacgcaactctctgcgaaaacgatctt 30217797  T
Q  135 att 137  Q
    |||    
T  30217796 att 30217794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 20 - 134
Target Start/End: Original strand, 52619139 - 52619253
Alignment:
Q  20 tatgtcggataggagaatagttttacataaacaaacattttatactcaaacagttaatgtgataaatattgtgaaaatgcttatgaaatatgcaactccc 119  Q
    ||||||| |||||| |||||||||||| ||||||||| ||||||  |||||| ||||||||| ||||||||||||||||||||||||||| ||||||||     
T  52619139 tatgtcgaataggaaaatagttttacacaaacaaacaatttataaacaaacacttaatgtgacaaatattgtgaaaatgcttatgaaatacgcaactccg 52619238  T
Q  120 tgcggaaacaatcct 134  Q
    ||||||||| |||||    
T  52619239 tgcggaaacgatcct 52619253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 20 - 137
Target Start/End: Original strand, 1188601 - 1188718
Alignment:
Q  20 tatgtcggataggagaatagttttacataaacaaacattttatactcaaacagttaatgtgataaatattgtgaaaatgcttatgaaatatgcaactccc 119  Q
    ||||||| |||||| |||||||| ||| ||||||||| ||||||| || ||| ||||| ||||||||||||||||||||||||||||||| |||||||||    
T  1188601 tatgtcgaataggaaaatagtttcacacaaacaaacaatttatacccacacacttaatatgataaatattgtgaaaatgcttatgaaatacgcaactccc 1188700  T
Q  120 tgcggaaacaatcctatt 137  Q
    | ||||||| ||||||||    
T  1188701 tacggaaacgatcctatt 1188718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 20 - 137
Target Start/End: Complemental strand, 21668429 - 21668312
Alignment:
Q  20 tatgtcggataggagaatagttttacataaacaaacattttatactcaaacagttaatgtgataaatattgtgaaaatgcttatgaaatatgcaactccc 119  Q
    ||||||| ||| || |||||||||||| ||||||||| |||||||  ||||| || || ||||||||||||||||||||||||||||||| |||||||||    
T  21668429 tatgtcgaataagaaaatagttttacacaaacaaacactttatacctaaacactttatatgataaatattgtgaaaatgcttatgaaatacgcaactccc 21668330  T
Q  120 tgcggaaacaatcctatt 137  Q
    ||||||||| ||||||||    
T  21668329 tgcggaaacgatcctatt 21668312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 20 - 137
Target Start/End: Complemental strand, 21677193 - 21677076
Alignment:
Q  20 tatgtcggataggagaatagttttacataaacaaacattttatactcaaacagttaatgtgataaatattgtgaaaatgcttatgaaatatgcaactccc 119  Q
    ||||||| ||| || |||||||||||| ||||||||| |||||||  ||||| || || ||||||||||||||||||||||||||||||| |||||||||    
T  21677193 tatgtcgaataagaaaatagttttacacaaacaaacactttatacctaaacactttatatgataaatattgtgaaaatgcttatgaaatacgcaactccc 21677094  T
Q  120 tgcggaaacaatcctatt 137  Q
    ||||||||| ||||||||    
T  21677093 tgcggaaacgatcctatt 21677076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 20 - 137
Target Start/End: Original strand, 22048318 - 22048435
Alignment:
Q  20 tatgtcggataggagaatagttttacataaacaaacattttatactcaaacagttaatgtgataaatattgtgaaaatgcttatgaaatatgcaactccc 119  Q
    |||||||  ||||| |||||||||||| ||||||||| ||||||| |||||| |||| |||| ||||||||||||||||||||||||||| |||||||||    
T  22048318 tatgtcgattaggaaaatagttttacacaaacaaacaatttatacccaaacacttaacgtgacaaatattgtgaaaatgcttatgaaatacgcaactccc 22048417  T
Q  120 tgcggaaacaatcctatt 137  Q
    || ||| || ||||||||    
T  22048418 tgtggacacgatcctatt 22048435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 20 - 137
Target Start/End: Original strand, 26070364 - 26070481
Alignment:
Q  20 tatgtcggataggagaatagttttacataaacaaacattttatactcaaacagttaatgtgataaatattgtgaaaatgcttatgaaatatgcaactccc 119  Q
    ||||||| | |||| |||||||||||| ||||||||| ||| | | |||||| ||||||||  ||||||||||||||||||||||||||| |||||||||    
T  26070364 tatgtcgaacaggaaaatagttttacacaaacaaacaatttgttcccaaacaattaatgtggcaaatattgtgaaaatgcttatgaaatacgcaactccc 26070463  T
Q  120 tgcggaaacaatcctatt 137  Q
    ||||||||| ||||||||    
T  26070464 tgcggaaacgatcctatt 26070481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 28 - 137
Target Start/End: Original strand, 42272021 - 42272130
Alignment:
Q  28 ataggagaatagttttacataaacaaacattttatactcaaacagttaatgtgataaatattgtgaaaatgcttatgaaatatgcaactccctgcggaaa 127  Q
    |||||| |||||||||||| ||| ||||| ||||||| |||||| |||| ||||||||||||||||| || |||||||||||||||||||| ||||||||    
T  42272021 ataggaaaatagttttacacaaataaacactttatacccaaacacttaaagtgataaatattgtgaacatacttatgaaatatgcaactccatgcggaaa 42272120  T
Q  128 caatcctatt 137  Q
    | ||||||||    
T  42272121 cgatcctatt 42272130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 29 - 137
Target Start/End: Complemental strand, 4838652 - 4838544
Alignment:
Q  29 taggagaatagttttacataaacaaacattttatactcaaacagttaatgtgataaatattgtgaaaatgcttatgaaatatgcaactccctgcggaaac 128  Q
    ||||| |||||||||||| ||||||||| ||||||| |||||| |||| |||| ||||||||||||||||||||||||||| ||||||||||| ||| ||    
T  4838652 taggaaaatagttttacacaaacaaacaatttatacccaaacacttaacgtgacaaatattgtgaaaatgcttatgaaatacgcaactccctgtggacac 4838553  T
Q  129 aatcctatt 137  Q
     ||||||||    
T  4838552 gatcctatt 4838544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 35 - 136
Target Start/End: Original strand, 324090 - 324191
Alignment:
Q  35 aatagttttacataaacaaacattttatactcaaacagttaatgtgataaatattgtgaaaatgcttatgaaatatgcaactccctgcggaaacaatcct 134  Q
    |||||||||||| ||||||||| ||||||| |||||| |||| |||| ||||||||||||||||||||||||||| ||||||||||| ||| || |||||    
T  324090 aatagttttacacaaacaaacaatttatacccaaacacttaacgtgacaaatattgtgaaaatgcttatgaaatacgcaactccctgtggacacgatcct 324189  T
Q  135 at 136  Q
    ||    
T  324190 at 324191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 29 - 136
Target Start/End: Complemental strand, 44428907 - 44428799
Alignment:
Q  29 taggagaatagttttacataaacaaacattttatactcaaacagttaatgtgataaatattgtgaaaatgcttatgaaatatgcaac-tccctgcggaaa 127  Q
    ||||| |||||||||||| ||||||||| |||||||||||||| |||| |||| ||||||||||||||||||||||||||| ||||| |||||| ||| |    
T  44428907 taggaaaatagttttacacaaacaaacaatttatactcaaacacttaacgtgacaaatattgtgaaaatgcttatgaaatacgcaacttccctgtggaca 44428808  T
Q  128 caatcctat 136  Q
    | |||||||    
T  44428807 cgatcctat 44428799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 20 - 118
Target Start/End: Complemental strand, 46691562 - 46691464
Alignment:
Q  20 tatgtcggataggagaatagttttacataaacaaacattttatactcaaacagttaatgtgataaatattgtgaaaatgcttatgaaatatgcaactcc 118  Q
    ||||||| |||||| |||||||||||| || |||||| |||||||||||||| ||||||||||||| ||| ||||||| ||||||||||| ||||||||    
T  46691562 tatgtcgaataggaaaatagttttacacaaccaaacaatttatactcaaacacttaatgtgataaacattatgaaaatacttatgaaatacgcaactcc 46691464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 20 - 137
Target Start/End: Complemental strand, 5273087 - 5272971
Alignment:
Q  20 tatgtcggataggagaatagttttacataaacaaacattttatactcaaacagttaatgtgataaatattgtgaaaatgcttatgaaatatgcaactccc 119  Q
    |||||||  ||||| |||||||| ||| ||||||||| ||||||| |||||| |||| |||| ||||||||||||||||||||||||||| |||||||||    
T  5273087 tatgtcgattaggaaaatagttt-acacaaacaaacaatttatacccaaacacttaacgtgacaaatattgtgaaaatgcttatgaaatacgcaactccc 5272989  T
Q  120 tgcggaaacaatcctatt 137  Q
    || ||| || ||||||||    
T  5272988 tgtggacacgatcctatt 5272971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 28 - 121
Target Start/End: Complemental strand, 40995064 - 40994971
Alignment:
Q  28 ataggagaatagttttacataaacaaacattttatactcaaacagttaatgtgataaatattgtgaaaatgcttatgaaatatgcaactccctg 121  Q
    |||||| |||||||||||| ||||||||| ||||||| |||||| ||||||||| || |||||||||||||| ||||||||| |||||||||||    
T  40995064 ataggaaaatagttttacacaaacaaacactttatacccaaacacttaatgtgacaagtattgtgaaaatgcatatgaaatacgcaactccctg 40994971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 35 - 137
Target Start/End: Complemental strand, 19247337 - 19247237
Alignment:
Q  35 aatagttttacataaacaaacattttatactcaaacagttaatgtgataaatattgtgaaaatgcttatgaaatatgcaactccctgcggaaacaatcct 134  Q
    |||||||||||| ||||||||| |||||||||||||| |||||| |||||| ||||||||||| |  |||||||| |||||||||||||||||| ||| |    
T  19247337 aatagttttacacaaacaaacaatttatactcaaacacttaatgggataaacattgtgaaaatac--atgaaatacgcaactccctgcggaaacgatctt 19247240  T
Q  135 att 137  Q
    |||    
T  19247239 att 19247237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 29 - 137
Target Start/End: Original strand, 33239563 - 33239670
Alignment:
Q  29 taggagaatagttttacataaacaaacattttatactcaaacagttaatgtgataaatattgtgaaaatgcttatgaaatatgcaactccctgcggaaac 128  Q
    ||||| |||||||||||| |||||| || ||||||| |||||| |||| |||| |||||||| |||||||||||||||||| ||||||||||| ||| ||    
T  33239563 taggaaaatagttttacacaaacaa-caatttatacccaaacacttaacgtgacaaatattgcgaaaatgcttatgaaatacgcaactccctgtggacac 33239661  T
Q  129 aatcctatt 137  Q
     ||||||||    
T  33239662 gatcctatt 33239670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 83 - 137
Target Start/End: Complemental strand, 19730982 - 19730928
Alignment:
Q  83 aaatattgtgaaaatgcttatgaaatatgcaactccctgcggaaacaatcctatt 137  Q
    ||||||||||||||||||||||||||| ||||||||||| ||| || ||||||||    
T  19730982 aaatattgtgaaaatgcttatgaaatacgcaactccctgtggacacgatcctatt 19730928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 295 - 384
Target Start/End: Complemental strand, 19940215 - 19940126
Alignment:
Q  295 tataggaagctatagtgtcacaatccttgtaggatcaatatctttttatactataacttgaaccttgtatacttgcactcagtcattcca 384  Q
    |||||||||||||||   |||| |||||||  ||| |||||||||||||||||||||||  ||  | |||||||||||||| || |||||    
T  19940215 tataggaagctatagctccacagtccttgtgagattaatatctttttatactataacttagacaatatatacttgcactcaatctttcca 19940126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 35 - 126
Target Start/End: Original strand, 20949400 - 20949490
Alignment:
Q  35 aatagttttacataaacaaacattttatactcaaacagttaatgtgataaatattgtgaaaatgcttatgaaatatgcaactccctgcggaa 126  Q
    |||||||||||| |||||||| |||||||| |||||| ||||| ||||||||  |||  ||||||||| || ||| |||||| || ||||||    
T  20949400 aatagttttacacaaacaaac-ttttatacccaaacacttaatatgataaatgatgttgaaatgcttaagatatacgcaacttccagcggaa 20949490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 313 - 373
Target Start/End: Original strand, 8913278 - 8913338
Alignment:
Q  313 cacaatccttgtaggatcaatatctttttatactataacttgaaccttgtatacttgcact 373  Q
    |||| ||| ||| ||||| |||||||||||||| |||||||| ||  ||||||||||||||    
T  8913278 cacagtccctgtgggatcgatatctttttataccataacttggacagtgtatacttgcact 8913338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 213 - 257
Target Start/End: Original strand, 25233119 - 25233162
Alignment:
Q  213 aaaataagtgtcacttaagaatatcaatgcaacaatttattattt 257  Q
    ||||||| |||||||| |||||||||||||||| |||||||||||    
T  25233119 aaaataattgtcactttagaatatcaatgcaac-atttattattt 25233162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 79; Significance: 8e-37; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 35 - 137
Target Start/End: Original strand, 16959203 - 16959305
Alignment:
Q  35 aatagttttacataaacaaacattttatactcaaacagttaatgtgataaatattgtgaaaatgcttatgaaatatgcaactccctgcggaaacaatcct 134  Q
    |||||||||||| ||||||||| ||||||| |||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||    
T  16959203 aatagttttacacaaacaaacaatttatacccaaacacttaatgtgataaatattgtgaaaatgcttatgaaatacgcaactccctgcggaaacgatcct 16959302  T
Q  135 att 137  Q
    |||    
T  16959303 att 16959305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 20 - 137
Target Start/End: Original strand, 22181213 - 22181330
Alignment:
Q  20 tatgtcggataggagaatagttttacataaacaaacattttatactcaaacagttaatgtgataaatattgtgaaaatgcttatgaaatatgcaactccc 119  Q
    |||||||  ||||| |||||||||||| ||||||||| ||||||| |||||| ||||||||| ||||||||||||||||||||||||||| |||||||||    
T  22181213 tatgtcgattaggaaaatagttttacacaaacaaacaatttatacccaaacacttaatgtgacaaatattgtgaaaatgcttatgaaatacgcaactccc 22181312  T
Q  120 tgcggaaacaatcctatt 137  Q
    || ||| || ||||||||    
T  22181313 tgtggacacgatcctatt 22181330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 20 - 137
Target Start/End: Complemental strand, 8742808 - 8742691
Alignment:
Q  20 tatgtcggataggagaatagttttacataaacaaacattttatactcaaacagttaatgtgataaatattgtgaaaatgcttatgaaatatgcaactccc 119  Q
    |||||||  ||||| |||||||||||| ||||||||| ||||||| |||||| |||| |||| ||||||||||||||||||||||||||| |||||||||    
T  8742808 tatgtcgattaggaaaatagttttacacaaacaaacaatttatacccaaacatttaacgtgacaaatattgtgaaaatgcttatgaaatacgcaactccc 8742709  T
Q  120 tgcggaaacaatcctatt 137  Q
    || ||| || ||||||||    
T  8742708 tgtggacacgatcctatt 8742691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 20 - 137
Target Start/End: Complemental strand, 9067692 - 9067575
Alignment:
Q  20 tatgtcggataggagaatagttttacataaacaaacattttatactcaaacagttaatgtgataaatattgtgaaaatgcttatgaaatatgcaactccc 119  Q
    |||||||  ||||| |||||||||||| ||||||||| ||||||| |||||| |||| |||| ||||||||||||||||||||||||||| |||||||||    
T  9067692 tatgtcgattaggaaaatagttttacacaaacaaacaatttatacccaaacacttaaagtgacaaatattgtgaaaatgcttatgaaatacgcaactccc 9067593  T
Q  120 tgcggaaacaatcctatt 137  Q
    || ||| || ||||||||    
T  9067592 tgtggacacgatcctatt 9067575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 20 - 137
Target Start/End: Complemental strand, 11308512 - 11308395
Alignment:
Q  20 tatgtcggataggagaatagttttacataaacaaacattttatactcaaacagttaatgtgataaatattgtgaaaatgcttatgaaatatgcaactccc 119  Q
    |||||||  ||||| |||| ||||||| ||||||||| ||||||| |||||| ||||||||| ||||||||||||||||||||||||||| |||||||||    
T  11308512 tatgtcgattaggaaaataattttacacaaacaaacaatttatacccaaacacttaatgtgacaaatattgtgaaaatgcttatgaaatacgcaactccc 11308413  T
Q  120 tgcggaaacaatcctatt 137  Q
    || ||| || ||||||||    
T  11308412 tgtggacacgatcctatt 11308395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 20 - 120
Target Start/End: Original strand, 28370730 - 28370830
Alignment:
Q  20 tatgtcggataggagaatagttttacataaacaaacattttatactcaaacagttaatgtgataaatattgtgaaaatgcttatgaaatatgcaactccc 119  Q
    |||||||  ||||| |||||||||||| ||||||||| ||||||| |||||| ||||||||| ||||||||||||||||||||||||||| |||||||||    
T  28370730 tatgtcgattaggaaaatagttttacacaaacaaacaatttatacccaaacacttaatgtgacaaatattgtgaaaatgcttatgaaatacgcaactccc 28370829  T
Q  120 t 120  Q
    |    
T  28370830 t 28370830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 29 - 137
Target Start/End: Complemental strand, 41576847 - 41576739
Alignment:
Q  29 taggagaatagttttacataaacaaacattttatactcaaacagttaatgtgataaatattgtgaaaatgcttatgaaatatgcaactccctgcggaaac 128  Q
    ||||| |||||||||||| ||||||||| ||||||| |||||| |||| |||| ||||||||||||||||||||||||||| ||||||||||| ||| ||    
T  41576847 taggaaaatagttttacacaaacaaacaatttatacccaaacacttaacgtgacaaatattgtgaaaatgcttatgaaatacgcaactccctgtggacac 41576748  T
Q  129 aatcctatt 137  Q
     ||||||||    
T  41576747 gatcctatt 41576739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 29 - 136
Target Start/End: Complemental strand, 28925659 - 28925552
Alignment:
Q  29 taggagaatagttttacataaacaaacattttatactcaaacagttaatgtgataaatattgtgaaaatgcttatgaaatatgcaactccctgcggaaac 128  Q
    ||||| |||||||||||| ||||||||| ||||||| |||||| |||| ||||||||||||| |||||||||||||||||| ||||||||||| ||| ||    
T  28925659 taggaaaatagttttacacaaacaaacaatttatacccaaacacttaacgtgataaatattgggaaaatgcttatgaaatacgcaactccctgtggacac 28925560  T
Q  129 aatcctat 136  Q
     |||||||    
T  28925559 gatcctat 28925552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 20 - 137
Target Start/End: Complemental strand, 34006298 - 34006181
Alignment:
Q  20 tatgtcggataggagaatagttttacataaacaaacattttatactcaaacagttaatgtgataaatattgtgaaaatgcttatgaaatatgcaactccc 119  Q
    |||||||  ||||| |||||||||||| ||||||| | |||||||||||||| ||||||||| ||||||||| ||||||||||||||||| |||||| ||    
T  34006298 tatgtcgattaggaaaatagttttacacaaacaaataatttatactcaaacacttaatgtgacaaatattgtaaaaatgcttatgaaatacgcaacttcc 34006199  T
Q  120 tgcggaaacaatcctatt 137  Q
    || ||| || ||||||||    
T  34006198 tgtggacacgatcctatt 34006181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 29 - 137
Target Start/End: Original strand, 3299447 - 3299555
Alignment:
Q  29 taggagaatagttttacataaacaaacattttatactcaaacagttaatgtgataaatattgtgaaaatgcttatgaaatatgcaactccctgcggaaac 128  Q
    ||||| |||||||||||| ||||||||| ||||||| |||||| |||| || | |||||||| |||||||||||||||||| ||||||||||| ||| ||    
T  3299447 taggaaaatagttttacacaaacaaacaatttatacccaaacacttaacgtaacaaatattgcgaaaatgcttatgaaatacgcaactccctgtggacac 3299546  T
Q  129 aatcctatt 137  Q
     ||||||||    
T  3299547 gatcctatt 3299555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 29 - 121
Target Start/End: Original strand, 27348672 - 27348764
Alignment:
Q  29 taggagaatagttttacataaacaaacattttatactcaaacagttaatgtgataaatattgtgaaaatgcttatgaaatatgcaactccctg 121  Q
    ||||| |||||||||||| ||||||||| ||||||| | |||| |||| |||| |||||||| |||||||||||||||||| |||| ||||||    
T  27348672 taggaaaatagttttacacaaacaaacaatttataccccaacacttaacgtgacaaatattgcgaaaatgcttatgaaatacgcaattccctg 27348764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 35 - 137
Target Start/End: Complemental strand, 13848836 - 13848735
Alignment:
Q  35 aatagttttacataaacaaacattttatactcaaacagttaatgtgataaatattgtgaaaatgcttatgaaatatgcaactccctgcggaaacaatcct 134  Q
    |||||||||||| |||||||| |||||||| |||||| ||||| ||||||||  |||  || |||||| || ||| |||||||||||||||||| |||||    
T  13848836 aatagttttacacaaacaaac-ttttatacccaaacacttaatatgataaatgatgttgaattgcttaagatatacgcaactccctgcggaaacgatcct 13848738  T
Q  135 att 137  Q
    |||    
T  13848737 att 13848735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 73 - 136
Target Start/End: Original strand, 16583066 - 16583129
Alignment:
Q  73 ttaatgtgataaatattgtgaaaatgcttatgaaatatgcaactccctgcggaaacaatcctat 136  Q
    |||| |||| ||||||||||||||||||||||||||| |||||||| || ||| || |||||||    
T  16583066 ttaacgtgacaaatattgtgaaaatgcttatgaaatacgcaactccatgtggacacgatcctat 16583129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 295 - 369
Target Start/End: Original strand, 25234528 - 25234602
Alignment:
Q  295 tataggaagctatagtgtcacaatccttgtaggatcaatatctttttatactataacttgaaccttgtatacttg 369  Q
    ||||||||| |||||   |||| ||| ||| ||||||||||||||||||||||||| ||| ||  ||||||||||    
T  25234528 tataggaagttatagctccacagtccctgtgggatcaatatctttttatactataaattggacaatgtatacttg 25234602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 327 - 384
Target Start/End: Original strand, 7636091 - 7636148
Alignment:
Q  327 gatcaatatctttttatactataacttgaaccttgtatacttgcactcagtcattcca 384  Q
    |||| |||| ||||||||| |||||||||   ||||||||||||||| ||||||||||    
T  7636091 gatcgatatttttttatacaataacttgattattgtatacttgcacttagtcattcca 7636148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 78; Significance: 3e-36; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 20 - 137
Target Start/End: Complemental strand, 27166623 - 27166506
Alignment:
Q  20 tatgtcggataggagaatagttttacataaacaaacattttatactcaaacagttaatgtgataaatattgtgaaaatgcttatgaaatatgcaactccc 119  Q
    |||||||  ||||| |||||||||||| ||||||||| ||||||| |||||| ||||||||| ||||||||||||||||||||||||||| |||||||||    
T  27166623 tatgtcgattaggaaaatagttttacacaaacaaacaatttatacccaaacacttaatgtgacaaatattgtgaaaatgcttatgaaatacgcaactccc 27166524  T
Q  120 tgcggaaacaatcctatt 137  Q
    ||||||||| ||||||||    
T  27166523 tgcggaaacgatcctatt 27166506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 20 - 137
Target Start/End: Original strand, 6270527 - 6270644
Alignment:
Q  20 tatgtcggataggagaatagttttacataaacaaacattttatactcaaacagttaatgtgataaatattgtgaaaatgcttatgaaatatgcaactccc 119  Q
    ||||||| |||||| |||||||||||||||||||||| ||||||| |||||| ||||||||| |||||||||||||||||||||| |||| |||||||||    
T  6270527 tatgtcgaataggaaaatagttttacataaacaaacaatttatacccaaacacttaatgtgacaaatattgtgaaaatgcttatgcaatacgcaactccc 6270626  T
Q  120 tgcggaaacaatcctatt 137  Q
    | || |||  ||||||||    
T  6270627 tacgaaaatgatcctatt 6270644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 20 - 137
Target Start/End: Complemental strand, 16904134 - 16904017
Alignment:
Q  20 tatgtcggataggagaatagttttacataaacaaacattttatactcaaacagttaatgtgataaatattgtgaaaatgcttatgaaatatgcaactccc 119  Q
    |||||||  ||||| |||||||||||| ||||||||| ||||||| |||||| ||||||||| ||||||||||||||||||||||||||| |||||||||    
T  16904134 tatgtcgattaggaaaatagttttacacaaacaaacaatttatacccaaacacttaatgtgacaaatattgtgaaaatgcttatgaaatacgcaactccc 16904035  T
Q  120 tgcggaaacaatcctatt 137  Q
    || ||| || ||||||||    
T  16904034 tgtggacacgatcctatt 16904017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 20 - 137
Target Start/End: Original strand, 9405061 - 9405178
Alignment:
Q  20 tatgtcggataggagaatagttttacataaacaaacattttatactcaaacagttaatgtgataaatattgtgaaaatgcttatgaaatatgcaactccc 119  Q
    |||||||  ||||| |||||||||||| ||||||||| ||||||| |||||| |||| |||| ||||||||||||||||||||||||||| |||||||||    
T  9405061 tatgtcgattaggaaaatagttttacacaaacaaacaatttatacccaaacacttaacgtgacaaatattgtgaaaatgcttatgaaatacgcaactccc 9405160  T
Q  120 tgcggaaacaatcctatt 137  Q
    || ||| || ||||||||    
T  9405161 tgtggacacgatcctatt 9405178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 20 - 137
Target Start/End: Complemental strand, 30606601 - 30606484
Alignment:
Q  20 tatgtcggataggagaatagttttacataaacaaacattttatactcaaacagttaatgtgataaatattgtgaaaatgcttatgaaatatgcaactccc 119  Q
    |||||||  ||||| |||||||||||| ||||||||| ||||||| | |||| ||||||||| ||||||||||||||||||||||||||| |||||||||    
T  30606601 tatgtcgattaggaaaatagttttacacaaacaaacaatttataccctaacacttaatgtgacaaatattgtgaaaatgcttatgaaatacgcaactccc 30606502  T
Q  120 tgcggaaacaatcctatt 137  Q
    || ||| || ||||||||    
T  30606501 tgtggacacgatcctatt 30606484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 20 - 137
Target Start/End: Original strand, 34456932 - 34457049
Alignment:
Q  20 tatgtcggataggagaatagttttacataaacaaacattttatactcaaacagttaatgtgataaatattgtgaaaatgcttatgaaatatgcaactccc 119  Q
    |||||||  ||||| |||||||||||| ||||||||| ||||||| |||||| |||| |||| ||||||||||||||||||||||||||| |||||||||    
T  34456932 tatgtcgattaggaaaatagttttacacaaacaaacaatttatacccaaacacttaacgtgacaaatattgtgaaaatgcttatgaaatacgcaactccc 34457031  T
Q  120 tgcggaaacaatcctatt 137  Q
    || ||| || ||||||||    
T  34457032 tgtggacacgatcctatt 34457049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 29 - 136
Target Start/End: Original strand, 11767400 - 11767507
Alignment:
Q  29 taggagaatagttttacataaacaaacattttatactcaaacagttaatgtgataaatattgtgaaaatgcttatgaaatatgcaactccctgcggaaac 128  Q
    ||||| |||||||||||| ||||||||| ||||||| |||||| |||| |||| ||||||||||||||||||||||||||| ||||||||||| ||| ||    
T  11767400 taggaaaatagttttacacaaacaaacaatttatacccaaacacttaacgtgacaaatattgtgaaaatgcttatgaaatacgcaactccctgtggacac 11767499  T
Q  129 aatcctat 136  Q
     |||||||    
T  11767500 gatcctat 11767507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 20 - 137
Target Start/End: Original strand, 7315841 - 7315958
Alignment:
Q  20 tatgtcggataggagaatagttttacataaacaaacattttatactcaaacagttaatgtgataaatattgtgaaaatgcttatgaaatatgcaactccc 119  Q
    |||||||  ||||| |||||||||||| ||| ||||| ||||||| |||||| |||| |||| ||||||||||||||||||||||||||| |||||||||    
T  7315841 tatgtcgattaggaaaatagttttacacaaataaacaatttatacccaaacacttaacgtgacaaatattgtgaaaatgcttatgaaatacgcaactccc 7315940  T
Q  120 tgcggaaacaatcctatt 137  Q
    || ||| || ||||||||    
T  7315941 tgtggacacgatcctatt 7315958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 29 - 137
Target Start/End: Complemental strand, 11722792 - 11722684
Alignment:
Q  29 taggagaatagttttacataaacaaacattttatactcaaacagttaatgtgataaatattgtgaaaatgcttatgaaatatgcaactccctgcggaaac 128  Q
    ||||| |||||||||||| ||||||||| ||||||| |||||| ||||  ||| ||||||||||||||||||||||||||| ||||||||||| ||| ||    
T  11722792 taggaaaatagttttacacaaacaaacaatttatacccaaacacttaacatgacaaatattgtgaaaatgcttatgaaatacgcaactccctgtggacac 11722693  T
Q  129 aatcctatt 137  Q
     ||||||||    
T  11722692 gatcctatt 11722684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 20 - 117
Target Start/End: Original strand, 33435239 - 33435336
Alignment:
Q  20 tatgtcggataggagaatagttttacataaacaaacattttatactcaaacagttaatgtgataaatattgtgaaaatgcttatgaaatatgcaactc 117  Q
    |||||||  ||||| |||||||||||| ||||||||| ||||||| |||||| |||| |||| ||||||||||||||||||||||||||| |||||||    
T  33435239 tatgtcgattaggaaaatagttttacacaaacaaacaatttatacccaaacacttaacgtgacaaatattgtgaaaatgcttatgaaatacgcaactc 33435336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 29 - 137
Target Start/End: Original strand, 24836368 - 24836476
Alignment:
Q  29 taggagaatagttttacataaacaaacattttatactcaaacagttaatgtgataaatattgtgaaaatgcttatgaaatatgcaactccctgcggaaac 128  Q
    ||||| |||||||||||| ||||||||| ||||||| |||||| |||| |||| ||||||||||||||||||||||||||| |||||| |||  ||| ||    
T  24836368 taggaaaatagttttacacaaacaaacaatttatacccaaacacttaacgtgacaaatattgtgaaaatgcttatgaaatacgcaacttcctttggacac 24836467  T
Q  129 aatcctatt 137  Q
     ||||||||    
T  24836468 gatcctatt 24836476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 20 - 137
Target Start/End: Original strand, 14345098 - 14345214
Alignment:
Q  20 tatgtcggataggagaatagttttacataaacaaacattttatactcaaacagttaatgtgataaatattgtgaaaatgcttatgaaatatgcaactccc 119  Q
    |||||||  ||||| |||||||| ||| | ||||||| ||||||| |||||| |||| |||| ||| ||||||||||||||||||||||| |||||||||    
T  14345098 tatgtcgattaggaaaatagttt-acacagacaaacaatttatacccaaacacttaacgtgacaaacattgtgaaaatgcttatgaaatacgcaactccc 14345196  T
Q  120 tgcggaaacaatcctatt 137  Q
    || ||| || ||||||||    
T  14345197 tgtggacacgatcctatt 14345214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 36 - 137
Target Start/End: Complemental strand, 34869253 - 34869152
Alignment:
Q  36 atagttttacataaacaaacattttatactcaaacagttaatgtgataaatattgtgaaaatgcttatgaaatatgcaactccctgcggaaacaatccta 135  Q
    ||||||||||| ||||||||| |||||||  ||||| ||||| ||||||||||| ||||||| ||||||||||| |||| | ||| ||||||| ||||||    
T  34869253 atagttttacacaaacaaacaatttatacctaaacacttaatatgataaatattatgaaaatacttatgaaatacgcaatttcctacggaaacgatccta 34869154  T
Q  136 tt 137  Q
    ||    
T  34869153 tt 34869152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 35 - 137
Target Start/End: Original strand, 31846601 - 31846700
Alignment:
Q  35 aatagttttacataaacaaacattttatactcaaacagttaatgtgataaatattgtgaaaatgcttatgaaatatgcaactccctgcggaaacaatcct 134  Q
    |||||||||||||||||||||| ||||||| ||||||  |   |||| ||||||||||||||||||||||||||| ||||||||||  ||| || |||||    
T  31846601 aatagttttacataaacaaacaatttatacccaaacacct---gtgacaaatattgtgaaaatgcttatgaaatacgcaactccctatggacacgatcct 31846697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 318 - 386
Target Start/End: Complemental strand, 13808092 - 13808024
Alignment:
Q  318 tccttgtaggatcaatatctttttatactataacttgaaccttgtatacttgcactcagtcattccatc 386  Q
    ||||||| ||||||||||||||||||| |||||| || ||  |||||||||||||| |||| |||||||    
T  13808092 tccttgtgggatcaatatctttttatattataacctggacaatgtatacttgcactaagtctttccatc 13808024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 78; Significance: 3e-36; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 20 - 137
Target Start/End: Complemental strand, 13217573 - 13217456
Alignment:
Q  20 tatgtcggataggagaatagttttacataaacaaacattttatactcaaacagttaatgtgataaatattgtgaaaatgcttatgaaatatgcaactccc 119  Q
    ||||||| |||||| |||||||||||| ||||| ||| ||||||| |||||| ||||||||| ||||||||||||||||||||||||||| |||||||||    
T  13217573 tatgtcgaataggaaaatagttttacacaaacatacaatttatacccaaacacttaatgtgacaaatattgtgaaaatgcttatgaaatacgcaactccc 13217474  T
Q  120 tgcggaaacaatcctatt 137  Q
    ||||||||| ||||||||    
T  13217473 tgcggaaacgatcctatt 13217456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 20 - 137
Target Start/End: Complemental strand, 16832308 - 16832191
Alignment:
Q  20 tatgtcggataggagaatagttttacataaacaaacattttatactcaaacagttaatgtgataaatattgtgaaaatgcttatgaaatatgcaactccc 119  Q
    ||||||| |||||| |||||||||||| ||||||||| ||||||| |||||| ||||| ||| ||||||||||||||||||||||||||| |||||||||    
T  16832308 tatgtcgaataggaaaatagttttacacaaacaaacaatttatacccaaacacttaatatgacaaatattgtgaaaatgcttatgaaatacgcaactccc 16832209  T
Q  120 tgcggaaacaatcctatt 137  Q
    ||||||||| ||||||||    
T  16832208 tgcggaaacgatcctatt 16832191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 20 - 137
Target Start/End: Original strand, 16131138 - 16131255
Alignment:
Q  20 tatgtcggataggagaatagttttacataaacaaacattttatactcaaacagttaatgtgataaatattgtgaaaatgcttatgaaatatgcaactccc 119  Q
    ||||||| |||||| |||||||||||| ||||||||| ||||||| |||||| ||||| ||| ||||||||||||||||||||||||||| ||||||||     
T  16131138 tatgtcgaataggaaaatagttttacacaaacaaacaatttatacccaaacacttaatatgacaaatattgtgaaaatgcttatgaaatacgcaactccg 16131237  T
Q  120 tgcggaaacaatcctatt 137  Q
    ||||||||| ||||||||    
T  16131238 tgcggaaacgatcctatt 16131255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 20 - 137
Target Start/End: Complemental strand, 40999629 - 40999512
Alignment:
Q  20 tatgtcggataggagaatagttttacataaacaaacattttatactcaaacagttaatgtgataaatattgtgaaaatgcttatgaaatatgcaactccc 119  Q
    ||||||| |||||| |||||||| ||| ||||||||| ||||||| |||||| ||||||||| |||||||||||||||||||||||| || |||||||||    
T  40999629 tatgtcgaataggaaaatagtttaacacaaacaaacaatttatacccaaacacttaatgtgacaaatattgtgaaaatgcttatgaattacgcaactccc 40999530  T
Q  120 tgcggaaacaatcctatt 137  Q
    ||||||||| ||||||||    
T  40999529 tgcggaaacgatcctatt 40999512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 20 - 137
Target Start/End: Complemental strand, 20225887 - 20225770
Alignment:
Q  20 tatgtcggataggagaatagttttacataaacaaacattttatactcaaacagttaatgtgataaatattgtgaaaatgcttatgaaatatgcaactccc 119  Q
    ||||||| |||||| |||||||||| | ||||||||| ||||||| |||||| ||||| ||||||||||||| ||||||||||||||||| ||||||| |    
T  20225887 tatgtcgaataggaaaatagttttatacaaacaaacaatttatacccaaacacttaatatgataaatattgtaaaaatgcttatgaaatacgcaactctc 20225788  T
Q  120 tgcggaaacaatcctatt 137  Q
    ||||||||| ||||||||    
T  20225787 tgcggaaacgatcctatt 20225770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 20 - 137
Target Start/End: Complemental strand, 39000706 - 39000589
Alignment:
Q  20 tatgtcggataggagaatagttttacataaacaaacattttatactcaaacagttaatgtgataaatattgtgaaaatgcttatgaaatatgcaactccc 119  Q
    |||||||  ||||| |||||||||||| ||||||||| ||||||| |||||| |||| |||| ||||||||||||||||||||||||||| |||||||||    
T  39000706 tatgtcgattaggaaaatagttttacacaaacaaacaatttatacccaaacacttaacgtgacaaatattgtgaaaatgcttatgaaatacgcaactccc 39000607  T
Q  120 tgcggaaacaatcctatt 137  Q
    || ||| || ||||||||    
T  39000606 tgtggacacgatcctatt 39000589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 35 - 137
Target Start/End: Complemental strand, 11738308 - 11738206
Alignment:
Q  35 aatagttttacataaacaaacattttatactcaaacagttaatgtgataaatattgtgaaaatgcttatgaaatatgcaactccctgcggaaacaatcct 134  Q
    |||||||||||| ||||||||| ||||||| |||||| ||||||||| || |||||||||||||||||||||||| | |||||||||||||||  |||||    
T  11738308 aatagttttacacaaacaaacaatttatacccaaacacttaatgtgacaattattgtgaaaatgcttatgaaatacgaaactccctgcggaaatgatcct 11738209  T
Q  135 att 137  Q
    |||    
T  11738208 att 11738206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 20 - 121
Target Start/End: Complemental strand, 33491723 - 33491622
Alignment:
Q  20 tatgtcggataggagaatagttttacataaacaaacattttatactcaaacagttaatgtgataaatattgtgaaaatgcttatgaaatatgcaactccc 119  Q
    |||||||  ||||| |||||||||||| ||||||||| ||||||| |||||| |||| |||| ||||||||||||||||||||||||||| |||||||||    
T  33491723 tatgtcgattaggaaaatagttttacacaaacaaacaatttatacccaaacacttaacgtgacaaatattgtgaaaatgcttatgaaatacgcaactccc 33491624  T
Q  120 tg 121  Q
    ||    
T  33491623 tg 33491622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 29 - 137
Target Start/End: Complemental strand, 12167732 - 12167624
Alignment:
Q  29 taggagaatagttttacataaacaaacattttatactcaaacagttaatgtgataaatattgtgaaaatgcttatgaaatatgcaactccctgcggaaac 128  Q
    ||||| |||||||||||| ||||||||| ||||||| |||||| |||| |||| |||||||||||||||| |||||||||| ||||||||||| ||| ||    
T  12167732 taggaaaatagttttacacaaacaaacaatttatacccaaacacttaacgtgacaaatattgtgaaaatgtttatgaaatacgcaactccctgtggacac 12167633  T
Q  129 aatcctatt 137  Q
     ||||||||    
T  12167632 gatcctatt 12167624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 29 - 136
Target Start/End: Complemental strand, 431857 - 431750
Alignment:
Q  29 taggagaatagttttacataaacaaacattttatactcaaacagttaatgtgataaatattgtgaaaatgcttatgaaatatgcaactccctgcggaaac 128  Q
    ||||| |||| ||||||| ||||||||| ||||||| |||||| |||| |||| ||||||||||||||||||||||||||| ||||||||||| ||| ||    
T  431857 taggaaaataattttacacaaacaaacaatttatacccaaacacttaacgtgacaaatattgtgaaaatgcttatgaaatacgcaactccctgtggacac 431758  T
Q  129 aatcctat 136  Q
     |||||||    
T  431757 gatcctat 431750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 20 - 121
Target Start/End: Complemental strand, 38121457 - 38121356
Alignment:
Q  20 tatgtcggataggagaatagttttacataaacaaacattttatactcaaacagttaatgtgataaatattgtgaaaatgcttatgaaatatgcaactccc 119  Q
    |||||||  ||||| |||||||| ||| ||||||||| ||||||| |||||| |||| |||| ||||||||||||||||||||||||||| |||||||||    
T  38121457 tatgtcgattaggaaaatagtttcacacaaacaaacaatttatacccaaacacttaacgtgacaaatattgtgaaaatgcttatgaaatacgcaactccc 38121358  T
Q  120 tg 121  Q
    ||    
T  38121357 tg 38121356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 20 - 137
Target Start/End: Complemental strand, 9667221 - 9667104
Alignment:
Q  20 tatgtcggataggagaatagttttacataaacaaacattttatactcaaacagttaatgtgataaatattgtgaaaatgcttatgaaatatgcaactccc 119  Q
    |||||||  ||||| |||||||||||| ||||||||| ||||||| |||||| ||||  ||| |||||||| ||||||||||||||| || |||||||||    
T  9667221 tatgtcgattaggaaaatagttttacacaaacaaacaatttatacccaaacacttaacatgacaaatattgcgaaaatgcttatgaactacgcaactccc 9667122  T
Q  120 tgcggaaacaatcctatt 137  Q
    || ||| || ||||||||    
T  9667121 tgtggacacgatcctatt 9667104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 41 - 116
Target Start/End: Original strand, 49249721 - 49249796
Alignment:
Q  41 tttacataaacaaacattttatactcaaacagttaatgtgataaatattgtgaaaatgcttatgaaatatgcaact 116  Q
    |||||| ||||||||| ||||||  |||||| |||| |||| ||||||||||||||||||||||||||| ||||||    
T  49249721 tttacacaaacaaacaatttatatccaaacacttaacgtgacaaatattgtgaaaatgcttatgaaatacgcaact 49249796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 326 - 373
Target Start/End: Original strand, 15245155 - 15245202
Alignment:
Q  326 ggatcaatatctttttatactataacttgaaccttgtatacttgcact 373  Q
    ||||| |||||||||||| |||||||||| ||| ||||||||||||||    
T  15245155 ggatcgatatctttttatgctataacttggaccgtgtatacttgcact 15245202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 313 - 384
Target Start/End: Complemental strand, 19882247 - 19882177
Alignment:
Q  313 cacaatccttgtaggatcaatatctttttatactataacttgaaccttgtatacttgcactcagtcattcca 384  Q
    |||||||||||||||||| |||| |||||| |||||| |||| ||  |||||||||||||| |||| |||||    
T  19882247 cacaatccttgtaggatcgatat-tttttagactatagcttggacagtgtatacttgcacttagtctttcca 19882177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 327 - 386
Target Start/End: Original strand, 26661348 - 26661407
Alignment:
Q  327 gatcaatatctttttatactataacttgaaccttgtatacttgcactcagtcattccatc 386  Q
    |||| ||||||||||||||||||||||| |   |||||||||||||| |||| |||||||    
T  26661348 gatcgatatctttttatactataacttggatagtgtatacttgcactaagtctttccatc 26661407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 328 - 375
Target Start/End: Complemental strand, 39439821 - 39439774
Alignment:
Q  328 atcaatatctttttatactataacttgaaccttgtatacttgcactca 375  Q
    |||||||| |||||||||||||||||| ||  ||||||||||||||||    
T  39439821 atcaatatttttttatactataacttggacagtgtatacttgcactca 39439774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 209 - 264
Target Start/End: Original strand, 52429275 - 52429329
Alignment:
Q  209 tcttaaaataagtgtcacttaagaatatcaatgcaacaatttattatttattttct 264  Q
    ||||||||||| |||||||| | |||||||||||||| ||||||||||| ||||||    
T  52429275 tcttaaaataattgtcactttacaatatcaatgcaac-atttattattttttttct 52429329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 326 - 386
Target Start/End: Original strand, 21502753 - 21502813
Alignment:
Q  326 ggatcaatatctttttatactataacttgaaccttgtatacttgcactcagtcattccatc 386  Q
    ||||||||||||||||||||| ||||||| ||  |||||||||  ||| |||| |||||||    
T  21502753 ggatcaatatctttttatactgtaacttggacaatgtatacttaaactaagtctttccatc 21502813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 213 - 257
Target Start/End: Original strand, 37506061 - 37506104
Alignment:
Q  213 aaaataagtgtcacttaagaatatcaatgcaacaatttattattt 257  Q
    ||||||| |||||||| |||||||||||||||| |||||||||||    
T  37506061 aaaataattgtcactttagaatatcaatgcaac-atttattattt 37506104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 213 - 257
Target Start/End: Complemental strand, 40145028 - 40144985
Alignment:
Q  213 aaaataagtgtcacttaagaatatcaatgcaacaatttattattt 257  Q
    ||||||| |||||||| |||||||||||||||| |||||||||||    
T  40145028 aaaataattgtcactttagaatatcaatgcaac-atttattattt 40144985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0298 (Bit Score: 74; Significance: 8e-34; HSPs: 2)
Name: scaffold0298
Description:

Target: scaffold0298; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 20 - 137
Target Start/End: Complemental strand, 11729 - 11612
Alignment:
Q  20 tatgtcggataggagaatagttttacataaacaaacattttatactcaaacagttaatgtgataaatattgtgaaaatgcttatgaaatatgcaactccc 119  Q
    |||||||  ||||| |||||||||||||||||||||| ||||||| |||||| ||||||||| ||||||||||||||||||||||||||| |||||||||    
T  11729 tatgtcgattaggaaaatagttttacataaacaaacaatttatacccaaacaattaatgtgacaaatattgtgaaaatgcttatgaaatacgcaactccc 11630  T
Q  120 tgcggaaacaatcctatt 137  Q
    || ||| || ||||||||    
T  11629 tgtggacacgatcctatt 11612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0298; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 20 - 137
Target Start/End: Complemental strand, 15499 - 15382
Alignment:
Q  20 tatgtcggataggagaatagttttacataaacaaacattttatactcaaacagttaatgtgataaatattgtgaaaatgcttatgaaatatgcaactccc 119  Q
    |||||||  ||||| |||||||||||||||||||||| ||||||| |||||| ||||||||| ||||||||||||||||||||||||||| |||||||||    
T  15499 tatgtcgattaggaaaatagttttacataaacaaacaatttatacccaaacaattaatgtgacaaatattgtgaaaatgcttatgaaatacgcaactccc 15400  T
Q  120 tgcggaaacaatcctatt 137  Q
    || ||| || ||||||||    
T  15399 tgtggacacgatcctatt 15382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0159 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: scaffold0159
Description:

Target: scaffold0159; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 20 - 137
Target Start/End: Complemental strand, 28424 - 28307
Alignment:
Q  20 tatgtcggataggagaatagttttacataaacaaacattttatactcaaacagttaatgtgataaatattgtgaaaatgcttatgaaatatgcaactccc 119  Q
    |||||||  ||||| |||||||||||| ||||||||| |||||||||||||| |||| |||| ||||||||||||||||||||||||||| |||||||||    
T  28424 tatgtcgattaggaaaatagttttacacaaacaaacaatttatactcaaacacttaacgtgacaaatattgtgaaaatgcttatgaaatacgcaactccc 28325  T
Q  120 tgcggaaacaatcctatt 137  Q
    || ||| || ||||||||    
T  28324 tgtggacacgatcctatt 28307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 66; Significance: 5e-29; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 20 - 137
Target Start/End: Complemental strand, 350131 - 350014
Alignment:
Q  20 tatgtcggataggagaatagttttacataaacaaacattttatactcaaacagttaatgtgataaatattgtgaaaatgcttatgaaatatgcaactccc 119  Q
    |||||||  ||||| |||||||||||| ||||||||| ||||||| |||||| |||| |||| ||||||||||||||||||||||||||| |||||||||    
T  350131 tatgtcgattaggaaaatagttttacacaaacaaacaatttatacccaaacacttaacgtgacaaatattgtgaaaatgcttatgaaatacgcaactccc 350032  T
Q  120 tgcggaaacaatcctatt 137  Q
    || ||| || ||||||||    
T  350031 tgtggacacgatcctatt 350014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0124 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold0124
Description:

Target: scaffold0124; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 20 - 136
Target Start/End: Original strand, 12831 - 12947
Alignment:
Q  20 tatgtcggataggagaatagttttacataaacaaacattttatactcaaacagttaatgtgataaatattgtgaaaatgcttatgaaatatgcaactccc 119  Q
    |||||||  ||||| |||| ||||||| ||||||||| ||||||| |||||| ||||||||| ||||||||||||||||||||||||||| |||||||||    
T  12831 tatgtcgattaggaaaataattttacacaaacaaacaatttatacccaaacaattaatgtgacaaatattgtgaaaatgcttatgaaatacgcaactccc 12930  T
Q  120 tgcggaaacaatcctat 136  Q
    || ||| || |||||||    
T  12931 tgtggacacgatcctat 12947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 29 - 137
Target Start/End: Original strand, 175247 - 175355
Alignment:
Q  29 taggagaatagttttacataaacaaacattttatactcaaacagttaatgtgataaatattgtgaaaatgcttatgaaatatgcaactccctgcggaaac 128  Q
    ||||| |||||||||||| ||||||||| ||||||| |||||| |||| |||| ||||||||||||||||||||||||||| ||||||||||| ||| ||    
T  175247 taggaaaatagttttacacaaacaaacaatttatacccaaacacttaacgtgacaaatattgtgaaaatgcttatgaaatacgcaactccctgtggacac 175346  T
Q  129 aatcctatt 137  Q
     ||||||||    
T  175347 gatcctatt 175355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0336 (Bit Score: 64; Significance: 7e-28; HSPs: 1)
Name: scaffold0336
Description:

Target: scaffold0336; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 29 - 136
Target Start/End: Original strand, 9388 - 9495
Alignment:
Q  29 taggagaatagttttacataaacaaacattttatactcaaacagttaatgtgataaatattgtgaaaatgcttatgaaatatgcaactccctgcggaaac 128  Q
    ||||| |||||||||||| ||||||||| ||||||| |||||| |||| |||| ||||||||||||||||||||||||||| ||||||||||| ||| ||    
T  9388 taggaaaatagttttacacaaacaaacaatttatacccaaacacttaacgtgacaaatattgtgaaaatgcttatgaaatacgcaactccctgtggacac 9487  T
Q  129 aatcctat 136  Q
     |||||||    
T  9488 gatcctat 9495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0444 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: scaffold0444
Description:

Target: scaffold0444; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 29 - 136
Target Start/End: Complemental strand, 12004 - 11896
Alignment:
Q  29 taggagaatagttttacataaacaaacattttatactcaaacagttaatgtgataaatattgtgaaaatgcttatgaaatatgcaac-tccctgcggaaa 127  Q
    ||||| |||||||||||| ||||||||| |||||||||||||| |||| |||| ||||||||||||||||||||||||||| ||||| |||||| ||| |    
T  12004 taggaaaatagttttacacaaacaaacaatttatactcaaacacttaacgtgacaaatattgtgaaaatgcttatgaaatacgcaacttccctgtggaca 11905  T
Q  128 caatcctat 136  Q
    | |||||||    
T  11904 cgatcctat 11896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0147 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: scaffold0147
Description:

Target: scaffold0147; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 20 - 119
Target Start/End: Original strand, 7368 - 7467
Alignment:
Q  20 tatgtcggataggagaatagttttacataaacaaacattttatactcaaacagttaatgtgataaatattgtgaaaatgcttatgaaatatgcaactccc 119  Q
    |||||||  ||||| ||||||||| |||||||||||| ||||||  |||||| |||| |||| ||||||||||||||||||||||||||| |||||||||    
T  7368 tatgtcgattaggaaaatagttttgcataaacaaacaatttatatccaaacacttaacgtgacaaatattgtgaaaatgcttatgaaatacgcaactccc 7467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 20 - 105
Target Start/End: Complemental strand, 75977 - 75892
Alignment:
Q  20 tatgtcggataggagaatagttttacataaacaaacattttatactcaaacagttaatgtgataaatattgtgaaaatgcttatga 105  Q
    |||||||  ||||| |||||||||||| ||||||||| ||||||| |||||| |||| ||||||||||||||||||||||||||||    
T  75977 tatgtcgattaggaaaatagttttacacaaacaaacaatttatacccaaacacttaacgtgataaatattgtgaaaatgcttatga 75892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0076 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 35 - 136
Target Start/End: Complemental strand, 25160 - 25059
Alignment:
Q  35 aatagttttacataaacaaacattttatactcaaacagttaatgtgataaatattgtgaaaatgcttatgaaatatgcaactccctgcggaaacaatcct 134  Q
    |||||||||||| ||||||||| ||||||| |||||| |||| | |  ||||||||||||||||| ||||||||| ||||||||||| ||| || |||||    
T  25160 aatagttttacacaaacaaacaatttatacccaaacacttaacgcggcaaatattgtgaaaatgcctatgaaatacgcaactccctgtggacacgatcct 25061  T
Q  135 at 136  Q
    ||    
T  25060 at 25059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0457 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0457
Description:

Target: scaffold0457; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 48 - 105
Target Start/End: Original strand, 400 - 457
Alignment:
Q  48 aaacaaacattttatactcaaacagttaatgtgataaatattgtgaaaatgcttatga 105  Q
    |||||||||||||| || |||||| |||||||||||||||||||||||||||||||||    
T  400 aaacaaacattttaaacccaaacacttaatgtgataaatattgtgaaaatgcttatga 457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 48 - 137
Target Start/End: Complemental strand, 14720 - 14631
Alignment:
Q  48 aaacaaacattttatactcaaacagttaatgtgataaatattgtgaaaatgcttatgaaatatgcaactccctgcggaaacaatcctatt 137  Q
    ||||||| |||||| || |||||| ||||| ||||||||  |||  ||||||||| || ||||||||||| |||||||||| ||||||||    
T  14720 aaacaaatattttaaacccaaacacttaatatgataaatgatgttgaaatgcttaagatatatgcaactctctgcggaaacgatcctatt 14631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 35 - 128
Target Start/End: Original strand, 6169 - 6261
Alignment:
Q  35 aatagttttacataaacaaacattttatactcaaacagttaatgtgataaatattgtgaaaatgcttatgaaatatgcaactccctgcggaaac 128  Q
    |||||||||||| |||||||| |||||||| |||| | ||||  |||||||||||||  ||||||||||||  || || | |||||||||||||    
T  6169 aatagttttacacaaacaaac-ttttatacccaaatacttaagatgataaatattgtttaaatgcttatgaggtaagctagtccctgcggaaac 6261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 48 - 105
Target Start/End: Complemental strand, 45726 - 45670
Alignment:
Q  48 aaacaaacattttatactcaaacagttaatgtgataaatattgtgaaaatgcttatga 105  Q
    ||||||||||||||  | |||||| |||||||||||||||||| ||||||||||||||    
T  45726 aaacaaacattttaagc-caaacacttaatgtgataaatattgcgaaaatgcttatga 45670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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