View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10583_low_5 (Length: 376)
Name: NF10583_low_5
Description: NF10583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10583_low_5 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 181; Significance: 1e-97; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 3 - 215
Target Start/End: Original strand, 35520045 - 35520257
Alignment:
| Q |
3 |
tgatgatcattatagatggtataataaagaagctgatgcaaggggtgagggtttgatggtttgaggactctacggctgacgaggtgacgccatgtgtcag |
102 |
Q |
| |
|
||||||||||||||||||||||| || ||||||||||||||||| ||||||| |||||||||||||||| | |||||||||||||| ||||||||||||| |
|
|
| T |
35520045 |
tgatgatcattatagatggtatagtagagaagctgatgcaagggatgagggtatgatggtttgaggactttgcggctgacgaggtggcgccatgtgtcag |
35520144 |
T |
|
| Q |
103 |
ctgaggagagtgaggacaatggcagtgacagcaacacttccttcaattcattggcttcggcagctgataaaccaacctttacaaaatcatcgatacccaa |
202 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
35520145 |
ctgaggagagtgaggacaatggcagtgacagcaacacttccttcaattcattggcttcggcagctgataaaccaacctttacaaaatcatcaatacccaa |
35520244 |
T |
|
| Q |
203 |
ctccattacactc |
215 |
Q |
| |
|
||||||||||||| |
|
|
| T |
35520245 |
ctccattacactc |
35520257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 3 - 210
Target Start/End: Complemental strand, 35710841 - 35710634
Alignment:
| Q |
3 |
tgatgatcattatagatggtataataaagaagctgatgcaaggggtgagggtttgatggtttgaggactctacggctgacgaggtgacgccatgtgtcag |
102 |
Q |
| |
|
||||||| |||||||||||||||||| ||||||||||||||||| ||||||| |||||||||||||||| | |||||||||||||| ||||||||||||| |
|
|
| T |
35710841 |
tgatgatgattatagatggtataatagagaagctgatgcaagggatgagggtatgatggtttgaggactttgcggctgacgaggtggcgccatgtgtcag |
35710742 |
T |
|
| Q |
103 |
ctgaggagagtgaggacaatggcagtgacagcaacacttccttcaattcattggcttcggcagctgataaaccaacctttacaaaatcatcgatacccaa |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | || |||||||||| | ||||||||||| |||| |||||| |
|
|
| T |
35710741 |
ctgaggagagtgaggacaatggcagtgacagcaaaacttccttcaattcattggcttcagtaggtgataaaccagcttttacaaaatcgtcgacacccaa |
35710642 |
T |
|
| Q |
203 |
ctccatta |
210 |
Q |
| |
|
|||||||| |
|
|
| T |
35710641 |
ctccatta |
35710634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 247 - 359
Target Start/End: Original strand, 35520289 - 35520401
Alignment:
| Q |
247 |
aacttcaaaattctaagcaaacatgaatacggtggtagttgtaggtgtagatgatgaggtggttggtgaatgggtgatgtgatagataacaaagcatggt |
346 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35520289 |
aacttcaaaattctaagcaaacatgaatacggtggtagttgcaggtgtagatgatgaggtggttggtgaatgggtgatgtgatagataacaaagcatggt |
35520388 |
T |
|
| Q |
347 |
ggctagctactac |
359 |
Q |
| |
|
||||||||||||| |
|
|
| T |
35520389 |
ggctagctactac |
35520401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University