View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10583_low_6 (Length: 375)
Name: NF10583_low_6
Description: NF10583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10583_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 175; Significance: 4e-94; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 181 - 359
Target Start/End: Original strand, 45545540 - 45545718
Alignment:
| Q |
181 |
cagggtactcagattcaagcaactatgtttaatgatgctgcaaggaagttttatgacaaatttgctatgggaaaggtgtattacatttcaaagggatctt |
280 |
Q |
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| T |
45545540 |
cagggtactcagattcaagcaactatgtttaatgatgctgcaaggaagttttatgacaaatttgctatgggaaaggtgtattacatttcaaagggatctt |
45545639 |
T |
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| Q |
281 |
tgaaagttgctaacaaaaatttcaaaactgtggcaaacgattatgaaatgacattgaatgagaattctgaggtggaaga |
359 |
Q |
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| T |
45545640 |
tgaaagttgctaacaaaaatttcaaaactgtggtaaacgattatgaaatgacattgaatgagaattctgaggtggaaga |
45545718 |
T |
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Target: chr4; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 8 - 106
Target Start/End: Original strand, 45545359 - 45545457
Alignment:
| Q |
8 |
aagcaaaggaactatgcgtacctataagaatgctagaggagaaggttgtgtattcaatgttgaactgaccgatgaagatgtaaggaacaggatatttga |
106 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |
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| T |
45545359 |
aagcaaaggaactatgcgtacctataagaatgctagaggagaaggttgtgtattcaatgttgaactgactgatgaagatgtaaggaacagaatatttga |
45545457 |
T |
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