View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10583_low_8 (Length: 251)
Name: NF10583_low_8
Description: NF10583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10583_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 82; Significance: 8e-39; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 128 - 237
Target Start/End: Original strand, 28103013 - 28103121
Alignment:
| Q |
128 |
ctagtgtcataagaacacttcttagtgtaactcattaagttaatacattgatttctacatctatgactgcgccacatcaccaataaaaaatatgtcatct |
227 |
Q |
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|||||||||| | |||||||||| ||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
28103013 |
ctagtgtcatgacaacacttcttggtgcaactcattaagttaatagattgatttctacatctatgactgcgccacatcaccaat-aaaaatatgtcatct |
28103111 |
T |
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| Q |
228 |
cttcttcccc |
237 |
Q |
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|||||||||| |
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| T |
28103112 |
cttcttcccc |
28103121 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 28102886 - 28102945
Alignment:
| Q |
1 |
aaacacttgttaagaaacttaaaaaagaaagtttatcttattaatgatgcattcaacacc |
60 |
Q |
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| T |
28102886 |
aaacacttgttaagaaacttaaaaaagaaaatttatcttattaatgatgcattcaacacc |
28102945 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 4 - 60
Target Start/End: Original strand, 9596294 - 9596350
Alignment:
| Q |
4 |
cacttgttaagaaacttaaaaaagaaagtttatcttattaatgatgcattcaacacc |
60 |
Q |
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| T |
9596294 |
cacttgttaagaagcttaaaaaagaaagtttatcttagagatgatgtattcaacacc |
9596350 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 60
Target Start/End: Original strand, 24093783 - 24093839
Alignment:
| Q |
4 |
cacttgttaagaaacttaaaaaagaaagtttatcttattaatgatgcattcaacacc |
60 |
Q |
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| T |
24093783 |
cacttgttaagaagcttaaaagagaaagtttatcttgggaatgatgtattcaacacc |
24093839 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 40
Target Start/End: Complemental strand, 6963715 - 6963682
Alignment:
| Q |
7 |
ttgttaagaaacttaaaaaagaaagtttatctta |
40 |
Q |
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|||||||||||||||||| ||||||||||||||| |
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| T |
6963715 |
ttgttaagaaacttaaaagagaaagtttatctta |
6963682 |
T |
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