View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10584_1 (Length: 439)
Name: NF10584_1
Description: NF10584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10584_1 |
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Alignment Details
Target: chr5 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 32 - 417
Target Start/End: Complemental strand, 9084700 - 9084314
Alignment:
| Q |
32 |
gtcttttatacttggtgagtaggttttgttagaatgagatcttttcttgtgttggaagctttttatgaagctataagatcgcaaagttttagtccctttt |
131 |
Q |
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| T |
9084700 |
gtcttttatacttggtgagtaggttttgttagaatgagatcttttcttgtgttggaagctttttatgaagctataagatcgcaaagttttagtccccttt |
9084601 |
T |
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| Q |
132 |
gagtttctatttatcattcacattcataatggcatgttgtgtagcatgaattttgatccttttgagttatgcagattgatgttattgttagcttgttgag |
231 |
Q |
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| T |
9084600 |
gagtttctatttatcattcacattcgtaatggcatgttgtgtagcatgaattttgatccttttgagttatgcagattgatgttattgttagcttgttgag |
9084501 |
T |
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| Q |
232 |
tggaagacttgtgcgtgagaggataggtcctgcaatgctgagtgctgttcaaagtcaggtacttttgttttgttcaaaaggattttatcaatgagataga |
331 |
Q |
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| T |
9084500 |
tggaagacttgtgcgtgagaggataggtcctgcaatgctgagtgctgttcaaagtcaggtacttttgttttgttcaaaaggattttatcaatgagataga |
9084401 |
T |
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| Q |
332 |
attttggctgcaatgttcatttatttcatagtatttttctgacac-nnnnnnnatcagatgggtgctgttgaaacaagctttgatga |
417 |
Q |
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| T |
9084400 |
attttggctgcaatgttcatttatttcatagtatttttctgacacttttttttatcagatgggtgctgttgaaacaagctttgatga |
9084314 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 199 - 292
Target Start/End: Original strand, 31663213 - 31663306
Alignment:
| Q |
199 |
tatgcagattgatgttattgttagcttgttgagtggaagacttgtgcgtgagaggataggtcctgcaatgctgagtgctgttcaaagtcaggta |
292 |
Q |
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| T |
31663213 |
tatgcagattgatattattgctagcctagtgagtgggagacttgtacgtgaaaggattggtcaagccatgttgaatgcggttcaaagtcaggta |
31663306 |
T |
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