View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10584_2 (Length: 409)

Name: NF10584_2
Description: NF10584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10584_2
NF10584_2
[»] chr5 (5 HSPs)
chr5 (1-385)||(29711881-29712263)
chr5 (55-369)||(29688422-29688733)
chr5 (58-369)||(29696532-29696843)
chr5 (61-150)||(179357-179446)
chr5 (68-192)||(9120069-9120193)
[»] chr3 (1 HSPs)
chr3 (229-369)||(47451354-47451494)
[»] chr4 (9 HSPs)
chr4 (63-202)||(48147334-48147473)
chr4 (61-98)||(48863570-48863607)
chr4 (121-210)||(49043781-49043870)
chr4 (231-319)||(48903421-48903509)
chr4 (122-181)||(48864395-48864454)
chr4 (108-194)||(7790426-7790512)
chr4 (108-150)||(7878729-7878771)
chr4 (61-98)||(49040871-49040908)
chr4 (118-190)||(48853037-48853109)
[»] chr8 (2 HSPs)
chr8 (229-311)||(4030300-4030382)
chr8 (123-181)||(15349244-15349302)
[»] chr1 (3 HSPs)
chr1 (64-103)||(24310521-24310560)
chr1 (64-98)||(24367473-24367507)
chr1 (64-98)||(24416083-24416117)
[»] chr7 (1 HSPs)
chr7 (278-316)||(30124824-30124862)


Alignment Details
Target: chr5 (Bit Score: 354; Significance: 0; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 1 - 385
Target Start/End: Complemental strand, 29712263 - 29711881
Alignment:
Q  1 aagggagcttctagagttgactttgccagctgatataacatctgctcctagtaaagtgtatgatttatgggtatttagaggatgtctcagtctatgggat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29712263 aagggagcttctagagttgactttgccagctgatataacatctgctcctagtaaagtgtatgatttatgggtatttagaggatgtctcagtctatgggat 29712164  T
Q  101 atggcacatgataatggtacagttgaaatatgggtgatggaaaaatacaatgtgacatcttcttggactaagattcttgttttgtcttttgatggaattc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  29712163 atggcacatgataatggtacagttgaaatatgggtgatggaaaaatacaatgtgacatcttcttggactaagactcttgttttgtcttttgatggaattc 29712064  T
Q  201 ccagtcattatttttgtccgaaatacgatacaaaaagtggtgatatcgttggaacaaatgctggtaatgtattggccaagtataatgacaaaggacaact 300  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  29712063 ccagccattatttttgtccgaaatacgatacaaaaagtggtgatatcgttggaacaaatgctggtaatgtattggccaagtataatgagaaaggacaact 29711964  T
Q  301 gctagagcatcactcctactgtgacaatgaatatggatccctagtggttatgtatacagaatctctgctcctccaattcctgatg 385  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  | ||||||||||||    
T  29711963 gctagagcatcagtcctactgtgacaatgaatatggatccctagtggttatgtatacagaatctctgct--ttcaattcctgatg 29711881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 55 - 369
Target Start/End: Original strand, 29688422 - 29688733
Alignment:
Q  55 agtgtatgatttatgggtatttagaggatgtctcagtctatgggatatg-gcacatgataatggtacagttgaaatatgggtgatggaaaaatacaatgt 153  Q
    |||||||||||||||| |||| |||||||||||||||||||  |||||| |||| ||||||||||||||||||||||||||||||| |||||||||||||    
T  29688422 agtgtatgatttatggctattcagaggatgtctcagtctatttgatatgtgcac-tgataatggtacagttgaaatatgggtgatgaaaaaatacaatgt 29688520  T
Q  154 gacatcttcttggactaagattcttgttttgtcttttgatggaattcccagtcattatttttgtccgaaatacgatacaaaaagtggtgatatcgttgga 253  Q
    |  ||| |||||||| |||| ||| ||| | ||||||| ||  ||||||| ||| || ||||||||||||||   |||||||||||||||||||||||||    
T  29688521 gcaatcgtcttggacaaagactctcgttctttcttttggtgacattcccattcactacttttgtccgaaatattgtacaaaaagtggtgatatcgttgga 29688620  T
Q  254 acaaatgctggtaatgtattggccaagtataatgacaaaggacaactgctagagcatcactcctactgtgacaatgaatatggatccctagtggttatgt 353  Q
    ||    |  | |||||||||||||||||||||||| |||||||| ||||||||||||||||||||||  ||| |||||||||||||||||||||||||||    
T  29688621 ac---cgacgataatgtattggccaagtataatgataaaggacagctgctagagcatcactcctactcggaccatgaatatggatccctagtggttatgt 29688717  T
Q  354 atacagaatctctgct 369  Q
    ||||||||||||||||    
T  29688718 atacagaatctctgct 29688733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 58 - 369
Target Start/End: Original strand, 29696532 - 29696843
Alignment:
Q  58 gtatgatttatgggtatttagaggatgtctcagtctatgggatatggcacatgataatggtacagttgaaatatgggtgatggaaaaatacaatgtgaca 157  Q
    ||||||||||||||| | |||||||||||||  ||||||| ||||    | |||||  | |||| || |||||||||||||||||||||||||||||  |    
T  29696532 gtatgatttatgggtgtatagaggatgtctcgctctatggcatattttgcctgatagagttacatttcaaatatgggtgatggaaaaatacaatgtgcaa 29696631  T
Q  158 tcttcttggactaagattcttgttttgtcttttgatggaattcccagtcattatttttgtccgaaatacgatacaaaaagtggtgatatcgttggaacaa 257  Q
    || ||||||||||||| ||||||  ||||||||||||| | |||   ||| |  ||||| ||||||||| ||||||||||||||||||||||||||| ||    
T  29696632 tcctcttggactaagactcttgtcctgtcttttgatggcaatcctgctcactccttttggccgaaatactatacaaaaagtggtgatatcgttggaagaa 29696731  T
Q  258 atgctggtaatgtattggccaagtataatgacaaaggacaactgctagagcatcactcctactgtgacaatgaatatggatccctagtggttatgtatac 357  Q
    |     ||  || ||||||||||||||||||||||||||| |||| ||| ||||||||||||||||||| | |||||| ||||| |||||||||||||||    
T  29696732 acatgcgttgtgcattggccaagtataatgacaaaggacagctgcaagaacatcactcctactgtgacagtcaatatgtatccccagtggttatgtatac 29696831  T
Q  358 agaatctctgct 369  Q
    ||||||||||||    
T  29696832 agaatctctgct 29696843  T

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Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 61 - 150
Target Start/End: Original strand, 179357 - 179446
Alignment:
Q  61 tgatttatgggtatttagaggatgtctcagtctatgggatatggcacatgataatggtacagttgaaatatgggtgatggaaaaatacaa 150  Q
    |||| ||||||||||| ||  || ||||||| |||||| |||||   ||||||||| |||||||||||||||||||||| || |||||||    
T  179357 tgatgtatgggtatttggacaatttctcagtatatgggctatggattatgataatgatacagttgaaatatgggtgatgaaagaatacaa 179446  T

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Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 192
Target Start/End: Original strand, 9120069 - 9120193
Alignment:
Q  68 tgggtatttagaggatgtctcagtctatgggatatggcacatgataatggtacagttgaaatatgggtgatggaaaaatacaatgtgacatcttcttgga 167  Q
    ||||||||| ||| || ||||||| |||||| |||||    || ||||| |||||||||||||||||||||| || ||||||| |||   || |||||||    
T  9120069 tgggtatttggagaatttctcagtatatgggctatggattttgctaatgatacagttgaaatatgggtgatgaaagaatacaaagtgcattcctcttgga 9120168  T
Q  168 ctaagattcttgttttgtcttttga 192  Q
      || | ||||||||||||| ||||    
T  9120169 agaaaactcttgttttgtctattga 9120193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 229 - 369
Target Start/End: Complemental strand, 47451494 - 47451354
Alignment:
Q  229 tacaaaaagtggtgatatcgttggaacaaatgctggtaatgtattggccaagtataatgacaaaggacaactgctagagcatcactcctactgtgacaat 328  Q
    ||||||||||||||||||  |||||||| ||| || ||  | |||||  ||||||||||||||||||||  || |||||||||  ||||| ||| || ||    
T  47451494 tacaaaaagtggtgatattattggaacagatgatgataccggattggttaagtataatgacaaaggacagttgttagagcatcgttcctattgtaacgat 47451395  T
Q  329 gaatatggatccctagtggttatgtatacagaatctctgct 369  Q
      || ||||| || |||||||||||| ||||| ||||||||    
T  47451394 ccatgtggatgccaagtggttatgtacacagagtctctgct 47451354  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 63 - 202
Target Start/End: Complemental strand, 48147473 - 48147334
Alignment:
Q  63 atttatgggtatttagaggatgtctcagtctatgggatatggcacatgataatggtacagttgaaatatgggtgatggaaaaatacaatgtgacatcttc 162  Q
    |||| ||||||||| ||  || ||||||||||  || |||||  ||||| ||| | | ||||||||||||||||||| || ||||||| |||   || ||    
T  48147473 atttgtgggtatttggacaatttctcagtctaacgggtatggatcatgacaatagcagagttgaaatatgggtgatgaaagaatacaaagtgcattcgtc 48147374  T
Q  163 ttggactaagattcttgttttgtcttttgatggaattccc 202  Q
    ||||||||||| ||||  ||||||| ||||||| ||||||    
T  48147373 ttggactaagactcttaatttgtctattgatggcattccc 48147334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 61 - 98
Target Start/End: Original strand, 48863570 - 48863607
Alignment:
Q  61 tgatttatgggtatttagaggatgtctcagtctatggg 98  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  48863570 tgatttatgggtatttagaggatctctcagtctatggg 48863607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 121 - 210
Target Start/End: Complemental strand, 49043870 - 49043781
Alignment:
Q  121 agttgaaatatgggtgatggaaaaatacaatgtgacatcttcttggactaagattcttgttttgtcttttgatggaattcccagtcatta 210  Q
    ||||||||||||||||||| || ||||||| |||   || || |||||||||| ||||||||| ||| ||||||  ||||||| ||||||    
T  49043870 agttgaaatatgggtgatgaaagaatacaaagtgcattcgtcatggactaagactcttgttttttctattgatgtcattcccactcatta 49043781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 231 - 319
Target Start/End: Original strand, 48903421 - 48903509
Alignment:
Q  231 caaaaagtggtgatatcgttggaacaaatgctggtaatgtattggccaagtataatgacaaaggacaactgctagagcatcactcctac 319  Q
    |||||| |||||| ||| |||||||||| | ||||| |  |||||  ||||||||||||||||||||  | |||||| |||||||||||    
T  48903421 caaaaaatggtgacatcattggaacaaaagatggtactagattggtgaagtataatgacaaaggacagttcctagagtatcactcctac 48903509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 122 - 181
Target Start/End: Original strand, 48864395 - 48864454
Alignment:
Q  122 gttgaaatatgggtgatggaaaaatacaatgtgacatcttcttggactaagattcttgtt 181  Q
    |||||||||||||||||| || ||||||| |||   || |||||||||||||||||||||    
T  48864395 gttgaaatatgggtgatgaaagaatacaaagtgcattcgtcttggactaagattcttgtt 48864454  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 108 - 194
Target Start/End: Original strand, 7790426 - 7790512
Alignment:
Q  108 atgataatggtacagttgaaatatgggtgatggaaaaatacaatgtgacatcttcttggactaagattcttgttttgtcttttgatg 194  Q
    ||||||||| |||| ||||||||||||||||| || ||||||| |||   || ||||||||||| | ||||||| | ||| ||||||    
T  7790426 atgataatgatacaattgaaatatgggtgatgaaagaatacaaagtgcattcgtcttggactaaaactcttgttctttctattgatg 7790512  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 108 - 150
Target Start/End: Original strand, 7878729 - 7878771
Alignment:
Q  108 atgataatggtacagttgaaatatgggtgatggaaaaatacaa 150  Q
    ||||||||| |||||||||||||||||||||| || |||||||    
T  7878729 atgataatgatacagttgaaatatgggtgatgaaagaatacaa 7878771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 98
Target Start/End: Complemental strand, 49040908 - 49040871
Alignment:
Q  61 tgatttatgggtatttagaggatgtctcagtctatggg 98  Q
    ||||||||||||||||| ||||| ||||||||||||||    
T  49040908 tgatttatgggtatttaaaggatttctcagtctatggg 49040871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 118 - 190
Target Start/End: Original strand, 48853037 - 48853109
Alignment:
Q  118 tacagttgaaatatgggtgatggaaaaatacaatgtgacatcttcttggactaagattcttgttttgtctttt 190  Q
    |||||||||||||||||| ||| || ||||||| |||   || ||||||||||||| ||||||| | ||||||    
T  48853037 tacagttgaaatatgggtcatgaaagaatacaaagtgcgttcgtcttggactaagactcttgttctttctttt 48853109  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 229 - 311
Target Start/End: Complemental strand, 4030382 - 4030300
Alignment:
Q  229 tacaaaaagtggtgatatcgttggaacaaatgctggtaatgtattggccaagtataatgacaaaggacaactgctagagcatc 311  Q
    ||||| ||||||||||||  |||||||| ||| ||||| || |||||  |||||| |||||||||||||  ||||||||||||    
T  4030382 tacaataagtggtgatattattggaacatatggtggtactgaattggtgaagtatgatgacaaaggacagttgctagagcatc 4030300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 123 - 181
Target Start/End: Original strand, 15349244 - 15349302
Alignment:
Q  123 ttgaaatatgggtgatggaaaaatacaatgtgacatcttcttggactaagattcttgtt 181  Q
    ||||||||||||||||| || ||||||| ||||  ||||||||||| ||||||||||||    
T  15349244 ttgaaatatgggtgatgaaagaatacaaagtgaactcttcttggacaaagattcttgtt 15349302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 64 - 103
Target Start/End: Original strand, 24310521 - 24310560
Alignment:
Q  64 tttatgggtatttagaggatgtctcagtctatgggatatg 103  Q
    |||||||||||||||||||| |||||||||||||| ||||    
T  24310521 tttatgggtatttagaggatttctcagtctatgggttatg 24310560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 64 - 98
Target Start/End: Original strand, 24367473 - 24367507
Alignment:
Q  64 tttatgggtatttagaggatgtctcagtctatggg 98  Q
    |||||||||||||||||||| ||||||||||||||    
T  24367473 tttatgggtatttagaggatttctcagtctatggg 24367507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 64 - 98
Target Start/End: Original strand, 24416083 - 24416117
Alignment:
Q  64 tttatgggtatttagaggatgtctcagtctatggg 98  Q
    |||||||||||||||||||| ||||||||||||||    
T  24416083 tttatgggtatttagaggatttctcagtctatggg 24416117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 278 - 316
Target Start/End: Complemental strand, 30124862 - 30124824
Alignment:
Q  278 aagtataatgacaaaggacaactgctagagcatcactcc 316  Q
    |||| ||||||||||||||| ||||||||||||||||||    
T  30124862 aagtttaatgacaaaggacagctgctagagcatcactcc 30124824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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