View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10584_3 (Length: 359)
Name: NF10584_3
Description: NF10584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10584_3 |
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| [»] chr6 (3 HSPs) |
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| [»] scaffold0015 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 311; Significance: 1e-175; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 12 - 359
Target Start/End: Original strand, 175719 - 176064
Alignment:
| Q |
12 |
atgaagctcaactttcctctaaatccttctaacattcgtgctatcatagctgactcttgcgatggcatcatctgtcttcaa-ccatcgatgacagattcg |
110 |
Q |
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| T |
175719 |
atgaagctcaactttcctctaaatccttctaacattcgtgctatcatagctgactcttgcgatggcatcatctgtcttcaaaccatcgatgacagattcg |
175818 |
T |
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| Q |
111 |
actgtggtgatccgctactatggaacccttgtaccaccaaattcaatatgttgccctctttggatttcgagaaaagtctacaaattgcatacaccattgg |
210 |
Q |
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| T |
175819 |
actgtggtgatccgctactatggaacccttgtaccaccaaattcaatatattgccctctttggatttcgagaaaagtctacaaattgcatacaccattgg |
175918 |
T |
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| Q |
211 |
gtatgacgctcaatttacccatacttacaaggtagttgctgtttctagctatatatctcgtggaatatttcaaaatgaaatttacaaaactcaagttaag |
310 |
Q |
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| T |
175919 |
gtatgacgctcaatttacccatacttacaaggtagttgctgtttctagctatatatctcgtggaa---ttcaaaatgatgtttacaaaactcaagttaag |
176015 |
T |
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| Q |
311 |
gctcacactttaggcaccaactcttggagaaggattccagacttccctt |
359 |
Q |
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| T |
176016 |
gttcacactttaggcaccaactcttggagaaggattccagacttccctt |
176064 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 295 - 359
Target Start/End: Complemental strand, 7565106 - 7565042
Alignment:
| Q |
295 |
caaaactcaagttaaggctcacactttaggcaccaactcttggagaaggattccagacttccctt |
359 |
Q |
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| T |
7565106 |
caaaactcaagttaaggttcatactttaggtagcaatgtttggagaaggattccagacttccctt |
7565042 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 359
Target Start/End: Complemental strand, 1471278 - 1471214
Alignment:
| Q |
295 |
caaaactcaagttaaggctcacactttaggcaccaactcttggagaaggattccagacttccctt |
359 |
Q |
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|||||||| |||||||| ||| |||||||| | ||| | |||||||| ||||| ||||||||||| |
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| T |
1471278 |
caaaactctagttaaggttcatactttaggtaacaatttttggagaacgattcaagacttccctt |
1471214 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 295 - 359
Target Start/End: Complemental strand, 40724 - 40660
Alignment:
| Q |
295 |
caaaactcaagttaaggctcacactttaggcaccaactcttggagaaggattccagacttccctt |
359 |
Q |
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||||||||||||||| | ||| ||||| |||||||||||||||||||||||| ||||||||||| |
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| T |
40724 |
caaaactcaagttaaagttcatactttgggcaccaactcttggagaaggattgaagacttccctt |
40660 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 295 - 359
Target Start/End: Original strand, 55419478 - 55419542
Alignment:
| Q |
295 |
caaaactcaagttaaggctcacactttaggcaccaactcttggagaaggattccagacttccctt |
359 |
Q |
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|||||||||||||| |||||| |||||||| ||||||| ||||| |||||| ||||||||||||| |
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| T |
55419478 |
caaaactcaagttagggctcatactttaggtaccaacttttggaaaaggataccagacttccctt |
55419542 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 292 - 359
Target Start/End: Complemental strand, 1421520 - 1421454
Alignment:
| Q |
292 |
ttacaaaactcaagttaaggctcacactttaggcaccaactcttggagaaggattccagacttccctt |
359 |
Q |
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|||||||||||||||| | | ||| ||||| |||||||||||||||||||||||| |||||||||| |
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| T |
1421520 |
ttacaaaactcaagttgaagttcatacttt-ggcaccaactcttggagaaggattaaggacttccctt |
1421454 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 359
Target Start/End: Complemental strand, 24233753 - 24233689
Alignment:
| Q |
295 |
caaaactcaagttaaggctcacactttaggcaccaactcttggagaaggattccagacttccctt |
359 |
Q |
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||||||||||||||| | ||| || ||||| ||| ||||||||||||||||| |||||||||| |
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| T |
24233753 |
caaaactcaagttaaagttcatacattaggtaccgactcttggagaaggattaaggacttccctt |
24233689 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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