View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10585_high_1 (Length: 255)
Name: NF10585_high_1
Description: NF10585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10585_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 165; Significance: 2e-88; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 22631739 - 22631935
Alignment:
| Q |
1 |
tgaaaccaattttacgggatatggctttaccttcactgatgggtggaagcattaacatccaaattcgaatcaatgaatctgttgaagcttgaaatcatgt |
100 |
Q |
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| T |
22631739 |
tgaaaccaattttgcgggatctggttttaccttcactagtgggtagaagcattaacatccaaattcgaatcaatgaatctgttgaagcttgaaatcatga |
22631838 |
T |
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| Q |
101 |
atcttcagcttttgtcatgacatagaaagagtaaacaaaattgcatctgtgataaaacaacacaagtgtagaatccaaacaagttattattgatttg |
197 |
Q |
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| T |
22631839 |
atcttcagcttttgtcatgacagagaaagagtaaacaaaattgcatctgtgataaaacaacacaagtgtagaatccaaacaagttattattgatttg |
22631935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 17 - 93
Target Start/End: Complemental strand, 28323523 - 28323447
Alignment:
| Q |
17 |
ggatatggctttaccttcactgatgggtggaagcattaacatccaaattcgaatcaatgaatctgttgaagcttgaa |
93 |
Q |
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| T |
28323523 |
ggatctggctttaccttcactggtggcaggaagcattaacatcgaaattcgaatcaatgaatttgttgaagcttgaa |
28323447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 148; Significance: 3e-78; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 36233538 - 36233736
Alignment:
| Q |
1 |
tgaaaccaattttacgggatatggctttaccttcactgatgggtggaagcattaa--catccaaattcgaatcaatgaatctgttgaagcttgaaatcat |
98 |
Q |
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| T |
36233538 |
tgaaaccaattttgtgggatctggctttaccttcaatggtgggtagaagcattaaaacatccaaattcgaatcaatgaatttgttgaagcttgaaatcat |
36233637 |
T |
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| Q |
99 |
gtatcttcagcttttgtcatgacatagaaagagtaaacaaaattgcatctgtgataaaacaacacaagtgtagaatccaaacaagttattattgatttg |
197 |
Q |
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| T |
36233638 |
gaatctccagcttttgtcatgacagagaaagagtaaacaaaattgcatctgtgataaaacaacacaagtgtagaatccaaacaagttattattgatttg |
36233736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 223
Target Start/End: Original strand, 36233746 - 36233775
Alignment:
| Q |
194 |
tttgtttgaagctaaaagttggctgcttcc |
223 |
Q |
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| T |
36233746 |
tttgtttgaagctaaaagttggctgcttcc |
36233775 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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