View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10585_low_12 (Length: 241)
Name: NF10585_low_12
Description: NF10585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10585_low_12 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 28419515 - 28419290
Alignment:
| Q |
1 |
aacatacttcagacgcgaagatgaaaaacaagaccattctttccttttccgattccagattcggtctccaatttcccgttattgttgctcttgtttagtt |
100 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
28419515 |
aacatacttcagacgcgaagatgaagaacaagaccattctttccttttccgattccagattcggtctccaatttcccgttattattgctcttgtttagtt |
28419416 |
T |
|
| Q |
101 |
gaagatannnnnnnnnnnnnnncttcttgttgatgtagattgatttcgagtaggaagaagaactttctagatctgcttctcagtaatacccaaatcatgt |
200 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28419415 |
gaagatctttttttgtttttttcttcttgttgatgtagattgatttcgagtagaaagaagaactttctagatctgcttctcagtaatacccaaatcatgt |
28419316 |
T |
|
| Q |
201 |
tcttagtaattttgtttttgatgttt |
226 |
Q |
| |
|
|||| ||||||||||||||||||||| |
|
|
| T |
28419315 |
tcttggtaattttgtttttgatgttt |
28419290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 154; Significance: 8e-82; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 232889 - 232664
Alignment:
| Q |
1 |
aacatacttcagacgcgaagatgaaaaacaagaccattctttccttttccgattccagattcggtctccaatttcccgttattgttgctcttgtttagtt |
100 |
Q |
| |
|
|||||||| |||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| |||||||||||| |
|
|
| T |
232889 |
aacatactccagacgcgaagatgaagaacaagaccattctttccttttctgattccagattcggtctccaatttcccgttattattg-tcttgtttagtt |
232791 |
T |
|
| Q |
101 |
gaagatannnnnnnnnnnnnnncttcttgttgatgtagattgatttcgagtaggaagaagaactttctagatctgcttctcagtaatacccaaatcatgt |
200 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
232790 |
taagatatttttttgtttttttcttcttgttgatgtagattgatttcgagtaggaagaagaactttctagatctgcttctcagtaatacccaaatcatgt |
232691 |
T |
|
| Q |
201 |
tcttagtaattttgtttttgatgtttt |
227 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
232690 |
tcttagtaattttgtttttgatgtttt |
232664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 149; Significance: 8e-79; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 50810141 - 50809913
Alignment:
| Q |
1 |
aacatacttcagacgcgaagatgaaaaacaagaccattctttccttttccgattccagattcggtctccaatttcccgttattgttgctcttgtttagtt |
100 |
Q |
| |
|
||||||||| | ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
50810141 |
aacatactttaaacgcgaagatgaagaacaagaccattctttccttttccgattccagattcggtctccaatttcccgttattattgctcttgtttagtt |
50810042 |
T |
|
| Q |
101 |
gaagatannnnnnnnnnnnnnn--cttcttgttgatgtagattgatttcgagtaggaagaagaactttctagatctgcttctcagtaatacccaaatcat |
198 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
50810041 |
gaagatatttttttttgtttttttcttcttgttgatgtagattgatttcgagtaggaagaagaactttctagatctgcttctccgtaatacccaaatcat |
50809942 |
T |
|
| Q |
199 |
gttcttagtaattttgtttttgatgtttt |
227 |
Q |
| |
|
|||||||| |||||||||||||||||||| |
|
|
| T |
50809941 |
gttcttagcaattttgtttttgatgtttt |
50809913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 50865721 - 50865949
Alignment:
| Q |
1 |
aacatacttcagacgcgaagatgaaaaacaagaccattctttccttttccgattccagattcggtctccaatttcccgttattgttgctcttgtttagtt |
100 |
Q |
| |
|
||||||||| | ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
50865721 |
aacatactttaaacgcgaagatgaagaacaagaccattctttccttttccgattccagattcggtctccaatttcccgttattattgctcttgtttagtt |
50865820 |
T |
|
| Q |
101 |
gaagatannnnnnnnnnnnnnn--cttcttgttgatgtagattgatttcgagtaggaagaagaactttctagatctgcttctcagtaatacccaaatcat |
198 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
50865821 |
gaagatatttttttttgtttttttcttcttgttgatgtagattgatttcgagtaggaagaagaactttctagatctgcttctccgtaatacccaaatcat |
50865920 |
T |
|
| Q |
199 |
gttcttagtaattttgtttttgatgtttt |
227 |
Q |
| |
|
|||||||| |||||||||||||||||||| |
|
|
| T |
50865921 |
gttcttagcaattttgtttttgatgtttt |
50865949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University