View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10585_low_13 (Length: 240)
Name: NF10585_low_13
Description: NF10585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10585_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 177; Significance: 2e-95; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 27 - 219
Target Start/End: Original strand, 44267376 - 44267568
Alignment:
| Q |
27 |
atatttgacaaaaatgtgatcaaacttgtcttaatcaaactgtttgaatggtaagtaaagttattcatcatgttctaatatatatagtagtagttgtaaa |
126 |
Q |
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| T |
44267376 |
atatttgacaaaaatgtgatcaaacttatcttaatcaaactctttgaatggtaagtaaagttattcatcatgttctaatatatatagtagtagttgtaaa |
44267475 |
T |
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| Q |
127 |
gaaaacactaatcaatacacattattaaaggctataacatagcatgatgcatttttcacttaaatgttcactatttatacacattggtggaca |
219 |
Q |
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| T |
44267476 |
gaagacactaatcaatacacattattaaaggctataacataggatgatgcatttttcacttaaatgttcactatttatacacattggtggaca |
44267568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 43
Target Start/End: Original strand, 44267282 - 44267312
Alignment:
| Q |
13 |
cataaatgggacttatatttgacaaaaatgt |
43 |
Q |
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| T |
44267282 |
cataaatgggacttatatttgacaaaaatgt |
44267312 |
T |
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