View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10585_low_14 (Length: 235)
Name: NF10585_low_14
Description: NF10585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10585_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 202; Significance: 1e-110; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 23 - 224
Target Start/End: Original strand, 31555437 - 31555638
Alignment:
| Q |
23 |
ctagatttcttccatatctgaaagctagaagatttaaacatttgttgaagctttccttccacagaaacaggccaaggtgtacatttgtgcttggtttgct |
122 |
Q |
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| T |
31555437 |
ctagatttcttccatatctgaaagctagaagatttaaacatttgttgaagctttccttccacagaaacaggccaaggtgtacatttgtgcttggtttgct |
31555536 |
T |
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| Q |
123 |
atatagtatattccccatgaaacatattaaaattctccttccttctcaaacagactgaggtgtacatctgtccttggctatcccttacaaatcctatgct |
222 |
Q |
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| T |
31555537 |
atatagtatattccccatgaaacatattaaaattctccttccttctcaaacagactgaggtgtacatctgtccttggctatcccttacaaatcctatgct |
31555636 |
T |
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| Q |
223 |
tc |
224 |
Q |
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|| |
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| T |
31555637 |
tc |
31555638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 23 - 91
Target Start/End: Original strand, 31558521 - 31558588
Alignment:
| Q |
23 |
ctagatttcttccatatctgaaagctagaagatttaaacatttgttgaagctttccttccacagaaaca |
91 |
Q |
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| T |
31558521 |
ctagatttcttccatatctgaaagctagaaga-ttaaacattcattgaagctttccttccacagaaaca |
31558588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 31 - 133
Target Start/End: Complemental strand, 31878024 - 31877923
Alignment:
| Q |
31 |
cttccatatctgaaagctagaagatttaaacatttgttgaagctttccttccacagaaacaggccaaggtgtacatttgtgcttggtttgctatatagta |
130 |
Q |
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| T |
31878024 |
cttcaatatctgaaagctaaaatatt-aaacattttttgaagctttccttccacagaaacagaccaaggtgtacatctgtgattggcttacgatatacta |
31877926 |
T |
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| Q |
131 |
tat |
133 |
Q |
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||| |
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| T |
31877925 |
tat |
31877923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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