View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10585_low_17 (Length: 219)
Name: NF10585_low_17
Description: NF10585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10585_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 152; Significance: 1e-80; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 42 - 213
Target Start/End: Original strand, 47604765 - 47604936
Alignment:
| Q |
42 |
atatcacacagaggaaacaaaaccaagaactaagtcaaacatctctctagtaactcaaaaattcatcataagcaactacataatattgcaagtacatttt |
141 |
Q |
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| T |
47604765 |
atataacacagaggaaacaaaaccaagaactaagtcaaacatctctctagtaactcaaaaattcatcataagcaactaaataatattgcaagcacatttt |
47604864 |
T |
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| Q |
142 |
gaatagaactgacccaaagctcaattatatatatagaatttatacttgtttttcagactttcaagtggatca |
213 |
Q |
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| T |
47604865 |
gaatagaactgacccaaagctcaattatatatatagaatttatacttgtttttcagattttcaagtgaatca |
47604936 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 16 - 170
Target Start/End: Original strand, 47609235 - 47609391
Alignment:
| Q |
16 |
aattcggtcagtcgctaaaa--aatagtatatcacacagaggaaacaaaaccaagaactaagtcaaacatctctctagtaactcaaaaattcatcataag |
113 |
Q |
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|||||||||||| ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47609235 |
aattcggtcagttgctaaaagaaatagcatatcacacagaggaaacaaaaccaagaactaagtcaaacatctctctagtaactcaaaaattcatcataag |
47609334 |
T |
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| Q |
114 |
caactacataatattgcaagtacattttgaatagaactgacccaaagctcaattata |
170 |
Q |
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| T |
47609335 |
caactacataatattgcaagcacattttgaatagaactaacccaaagctcaattata |
47609391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 56 - 116
Target Start/End: Original strand, 19991412 - 19991472
Alignment:
| Q |
56 |
aaacaaaaccaagaactaagtcaaacatctctctagtaactcaaaaattcatcataagcaa |
116 |
Q |
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| T |
19991412 |
aaacaaaactaagaacaaagtcaagcatctttctagtaactcaaaaattcattatatgcaa |
19991472 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 47604441 - 47604479
Alignment:
| Q |
1 |
atttagagatgatacaattcggtcagtcgctaaaaaata |
39 |
Q |
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| T |
47604441 |
atttagagatgatataactcggtcagtcgctaaaaaata |
47604479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 64 - 101
Target Start/End: Original strand, 4287741 - 4287778
Alignment:
| Q |
64 |
ccaagaactaagtcaaacatctctctagtaactcaaaa |
101 |
Q |
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| T |
4287741 |
ccaagaacaaagtcaaacatctctctagtaaatcaaaa |
4287778 |
T |
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