View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10585_low_2 (Length: 439)

Name: NF10585_low_2
Description: NF10585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10585_low_2
NF10585_low_2
[»] chr8 (1 HSPs)
chr8 (18-409)||(41294449-41294840)
[»] chr3 (2 HSPs)
chr3 (268-409)||(7755507-7755648)
chr3 (293-409)||(4086182-4086298)
[»] chr5 (2 HSPs)
chr5 (268-366)||(26153224-26153320)
chr5 (181-248)||(10049287-10049354)
[»] chr2 (3 HSPs)
chr2 (288-369)||(2210353-2210435)
chr2 (174-250)||(29712410-29712484)
chr2 (196-268)||(6766463-6766535)
[»] chr4 (3 HSPs)
chr4 (268-409)||(43470872-43471012)
chr4 (181-236)||(41319455-41319510)
chr4 (184-263)||(41463900-41463978)
[»] chr1 (2 HSPs)
chr1 (181-264)||(19038947-19039030)
chr1 (184-264)||(32153052-32153132)
[»] chr7 (2 HSPs)
chr7 (184-256)||(31542260-31542332)
chr7 (217-264)||(28904860-28904907)


Alignment Details
Target: chr8 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 18 - 409
Target Start/End: Complemental strand, 41294840 - 41294449
Alignment:
Q  18 ataccttcagaaaaagttttatgtgtttccaactatatatgtttcaatgcttgtgatttatatatggactaacactgaacttactataacgcagttaaga 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  41294840 ataccttcagaaaaagttttatgtgtttccaactatatatgtttcaatgcttgtgatttatatatggactaacactgaacttactataacgcagttgaga 41294741  T
Q  118 tggaatcattatctaaattagctttatcccggcgttccgaaaactagatgagtatttaagggaaggggatttcctccggtgtgtttctctccagttttct 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||    
T  41294740 tggaatcattatctaaattagctttatcccggcgttccgaaaactagatgagtatttaagggaaggggattttctccggtgtgtttctctcaagttttct 41294641  T
Q  218 gcagtgtgggaatctacaccattaaatttattatatctcataatttctaagaaaatgattgatgttacgagacacagtcttgcacgaatttatacgaata 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||| || ||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  41294640 gcagtgtgggaatctacaccattaaatttattatatctcataatttttaggaaaatgcttgatgttacgagacacagtcttgcacgaatttatacgaata 41294541  T
Q  318 gtaactattcattttattttcaaaatccaacaagctagattaaatttctataaagaatataggagtaactaccatctgccaacacttctcag 409  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  41294540 gtaactattcattttattttcaaaacccaacaagctagattaaatttctataaagaatataggagtaactaccatctgccaacatttctcag 41294449  T

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Target: chr3 (Bit Score: 110; Significance: 3e-55; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 268 - 409
Target Start/End: Original strand, 7755507 - 7755648
Alignment:
Q  268 gaaaatgattgatgttacgagacacagtcttgcacgaatttatacgaatagtaactattcattttattttcaaaatccaacaagctagattaaatttcta 367  Q
    ||||||| || |||||||||||||| || ||| ||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||    
T  7755507 gaaaatgcttaatgttacgagacacggtattgtacgaatttatacgaatagtaactattcattttatttttaaaacccaacaagctagattaaatttcta 7755606  T
Q  368 taaagaatataggagtaactaccatctgccaacacttctcag 409  Q
    ||||| ||||||||||||||||||||||||||||||||||||    
T  7755607 taaagtatataggagtaactaccatctgccaacacttctcag 7755648  T

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Target: chr3; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 293 - 409
Target Start/End: Original strand, 4086182 - 4086298
Alignment:
Q  293 agtcttgcacgaatttatacgaatagtaactattcattttattttcaaaatccaacaagctagattaaatttctataaagaatataggagtaactaccat 392  Q
    |||||||||  |||||| |||||| |||| |||||||||||||||||||| |||||||||||||||||||||||||| || ||| || |||||| |||||    
T  4086182 agtcttgcataaatttagacgaatggtaattattcattttattttcaaaacccaacaagctagattaaatttctatagagtatacagcagtaaccaccat 4086281  T
Q  393 ctgccaacacttctcag 409  Q
    |||||||||||||||||    
T  4086282 ctgccaacacttctcag 4086298  T

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Target: chr5 (Bit Score: 68; Significance: 3e-30; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 268 - 366
Target Start/End: Original strand, 26153224 - 26153320
Alignment:
Q  268 gaaaatgattgatgttacgagacacagtcttgcacgaatttatacgaatagtaactattcattttattttcaaaatccaacaagctagattaaatttct 366  Q
    ||||||| || |||||||||  |||| ||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  26153224 gaaaatgcttaatgttacga--cacaatcttgcacgaatttagacgaatggtaactattcattttattttcaaaatccaacaagctagattaaatttct 26153320  T

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Target: chr5; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 181 - 248
Target Start/End: Original strand, 10049287 - 10049354
Alignment:
Q  181 aggggatttcctccggtgtgtttctctccagttttctgcagtgtgggaatctacaccattaaatttat 248  Q
    |||| |||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||    
T  10049287 agggaatttcctccggtgtgtttttctcctgttttttgcagtgtgggaatctacaccattaaatttat 10049354  T

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Target: chr2 (Bit Score: 63; Significance: 3e-27; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 288 - 369
Target Start/End: Complemental strand, 2210435 - 2210353
Alignment:
Q  288 gacacagtcttgcacgaatttatacgaatag-taactattcattttattttcaaaatccaacaagctagattaaatttctata 369  Q
    |||| ||||||||||||||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2210435 gacatagtcttgcacgaatttagacgaatgggtaactattcattttattttcaaaatccaacaagctagattaaatttctata 2210353  T

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Target: chr2; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 174 - 250
Target Start/End: Original strand, 29712410 - 29712484
Alignment:
Q  174 taagggaaggggatttcctccggtgtgtttctctccagttttctgcagtgtgggaatctacaccattaaatttatta 250  Q
    |||||| |||||||||| |||||||| ||||||  | |||||||| |||||||||||||||||||||||||||||||    
T  29712410 taaggggaggggatttcttccggtgtttttctc--ctgttttctgtagtgtgggaatctacaccattaaatttatta 29712484  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 196 - 268
Target Start/End: Original strand, 6766463 - 6766535
Alignment:
Q  196 gtgtgtttctctccagttttctgcagtgtgggaatctacaccattaaatttattatatctcataatttctaag 268  Q
    |||||||| ||||| ||||||| | |||||  ||||||||||| ||||  |||||| ||||||||||| ||||    
T  6766463 gtgtgtttttctcctgttttctactgtgtgaaaatctacaccaataaacatattatctctcataatttttaag 6766535  T

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Target: chr4 (Bit Score: 56; Significance: 5e-23; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 268 - 409
Target Start/End: Complemental strand, 43471012 - 43470872
Alignment:
Q  268 gaaaatgattgatgttacgagacacagtcttgcacgaatttatacgaatagtaactattcattttattttcaaaatccaacaagctagattaaatttcta 367  Q
    ||||||| || |||||||||  || |||||||||| |||||| |||||| || |||||| |||||||||  ||||  || ||||||||||||||||||||    
T  43471012 gaaaatgcttaatgttacga--cagagtcttgcacaaatttagacgaatggtgactatttattttatttgtaaaacacagcaagctagattaaatttcta 43470915  T
Q  368 taaagaata-taggagtaactaccatctgccaacacttctcag 409  Q
    ||||| |||  || |||||| ||||||||||||||||||||||    
T  43470914 taaagtatacaagtagtaaccaccatctgccaacacttctcag 43470872  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 181 - 236
Target Start/End: Complemental strand, 41319510 - 41319455
Alignment:
Q  181 aggggatttcctccggtgtgtttctctccagttttctgcagtgtgggaatctacac 236  Q
    |||||||||||||| |||||||| ||||| ||||| |||||||| | |||||||||    
T  41319510 aggggatttcctcccgtgtgtttttctcctgttttatgcagtgtagaaatctacac 41319455  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 184 - 263
Target Start/End: Original strand, 41463900 - 41463978
Alignment:
Q  184 ggatttcctccggtgtgtttctctccagttttctgcagtgtgggaatctacaccattaaatttattatatctcataattt 263  Q
    |||| |||||| |||||||| ||| |  ||||||||||||| | ||||||||||||||||| |||||| |||| ||||||    
T  41463900 ggatctcctcccgtgtgtttttcttcgattttctgcagtgtag-aatctacaccattaaatatattatctctcttaattt 41463978  T

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Target: chr1 (Bit Score: 56; Significance: 5e-23; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 181 - 264
Target Start/End: Original strand, 19038947 - 19039030
Alignment:
Q  181 aggggatttcctccggtgtgtttctctccagttttctgcagtgtgggaatctacaccattaaatttattatatctcataatttc 264  Q
    |||||||||||||| |||||||| ||||  ||||||||| ||||||||||||||| ||||||||||||||| ||||||||||||    
T  19038947 aggggatttcctccagtgtgtttttctcttgttttctgcggtgtgggaatctacaacattaaatttattatctctcataatttc 19039030  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 184 - 264
Target Start/End: Complemental strand, 32153132 - 32153052
Alignment:
Q  184 ggatttcctccggtgtgtttctctccagttttctgcagtgtgggaatctacaccattaaatttattatatctcataatttc 264  Q
    |||||| |||| |||||||| |||||  ||||| ||| |||||||||||| ||||||||||| ||||| |||| |||||||    
T  32153132 ggatttgctccagtgtgtttttctcctattttccgcaatgtgggaatctaaaccattaaattcattatctctcctaatttc 32153052  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 184 - 256
Target Start/End: Complemental strand, 31542332 - 31542260
Alignment:
Q  184 ggatttcctccggtgtgtttctctccagttttctgcagtgtgggaatctacaccattaaatttattatatctc 256  Q
    |||| |||||| |||||||| ||||||||||||| |||||||| |||||||||||| |||| |||||| ||||    
T  31542332 ggatctcctcctgtgtgtttttctccagttttctccagtgtggaaatctacaccatcaaatgtattatctctc 31542260  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 217 - 264
Target Start/End: Complemental strand, 28904907 - 28904860
Alignment:
Q  217 tgcagtgtgggaatctacaccattaaatttattatatctcataatttc 264  Q
    ||||||||||||||||||||||||||||||||||| |||| |||||||    
T  28904907 tgcagtgtgggaatctacaccattaaatttattatctctcttaatttc 28904860  T

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